Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

tag_button

FMODB ID: 7G73K

Calculation Name: 1UUN-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1UUN

Chain ID: A

ChEMBL ID:

UniProt ID: A0QR29

Base Structure: X-ray

Registration Date: 2023-06-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 184
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -1456428.59249
FMO2-HF: Nuclear repulsion 1389113.099291
FMO2-HF: Total energy -67315.493199
FMO2-MP2: Total energy -67516.120137


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:GLY)


Summations of interaction energy for fragment #1(A:1:GLY)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-9.957-18.69822.334-8.654-4.937-0.048
Interaction energy analysis for fragmet #1(A:1:GLY)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.002 / q_NPA : -0.013
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3ASP-1-0.833-0.9223.815-5.390-4.028-0.007-0.677-0.6780.003
4A4ASN0-0.027-0.0035.9291.1501.1500.0000.0000.0000.000
5A5GLU-1-0.847-0.9259.308-1.180-1.1800.0000.0000.0000.000
6A6LEU0-0.020-0.01311.5670.1440.1440.0000.0000.0000.000
7A7SER0-0.023-0.02815.349-0.029-0.0290.0000.0000.0000.000
8A8LEU0-0.031-0.01618.0100.0260.0260.0000.0000.0000.000
9A9VAL0-0.0290.00021.668-0.003-0.0030.0000.0000.0000.000
10A10ASP-1-0.786-0.88224.577-0.247-0.2470.0000.0000.0000.000
11A11GLY00.004-0.01026.2650.0170.0170.0000.0000.0000.000
12A12GLN0-0.117-0.06528.8420.0190.0190.0000.0000.0000.000
13A13ASP-1-0.949-0.97228.193-0.156-0.1560.0000.0000.0000.000
14A14ARG10.8470.92924.0960.2480.2480.0000.0000.0000.000
15A15THR0-0.053-0.02719.472-0.005-0.0050.0000.0000.0000.000
16A16LEU00.0130.01119.570-0.014-0.0140.0000.0000.0000.000
17A17THR00.0280.02313.3460.0120.0120.0000.0000.0000.000
18A18VAL00.0150.02713.898-0.016-0.0160.0000.0000.0000.000
19A19GLN0-0.022-0.0448.978-0.196-0.1960.0000.0000.0000.000
20A20GLN0-0.034-0.0167.9390.1670.1670.0000.0000.0000.000
21A21TRP0-0.031-0.0262.809-1.185-0.5310.354-0.320-0.687-0.001
22A22ASP-1-0.850-0.9311.661-7.762-18.75821.960-7.617-3.347-0.050
23A23THR0-0.096-0.0363.5662.2262.4650.027-0.040-0.2250.000
24A24PHE0-0.014-0.0146.5950.3980.3980.0000.0000.0000.000
25A25LEU00.0020.0049.0380.0270.0270.0000.0000.0000.000
26A26ASN0-0.026-0.01112.6910.1080.1080.0000.0000.0000.000
27A27GLY00.0480.01214.7170.0030.0030.0000.0000.0000.000
28A28VAL0-0.041-0.01218.2430.0390.0390.0000.0000.0000.000
29A29PHE0-0.051-0.03821.002-0.006-0.0060.0000.0000.0000.000
30A30PRO00.0230.02224.732-0.001-0.0010.0000.0000.0000.000
31A31LEU00.0730.03926.3730.0160.0160.0000.0000.0000.000
32A32ASP-1-0.824-0.88728.257-0.089-0.0890.0000.0000.0000.000
33A33ARG10.8150.89530.1030.0560.0560.0000.0000.0000.000
34A34ASN00.0440.04930.8420.0070.0070.0000.0000.0000.000
35A35ARG10.9740.96030.2490.0450.0450.0000.0000.0000.000
36A36LEU0-0.0280.00230.256-0.003-0.0030.0000.0000.0000.000
37A37THR0-0.020-0.01226.936-0.012-0.0120.0000.0000.0000.000
38A38ARG10.7520.86422.9680.1290.1290.0000.0000.0000.000
39A39GLU-1-0.767-0.88022.177-0.140-0.1400.0000.0000.0000.000
40A40TRP00.0090.00816.8590.0360.0360.0000.0000.0000.000
41A41PHE0-0.019-0.01015.7580.0050.0050.0000.0000.0000.000
42A42HIS00.0260.03111.2750.1080.1080.0000.0000.0000.000
43A43SER0-0.015-0.0059.6170.1360.1360.0000.0000.0000.000
44A44GLY00.0570.0347.230-0.154-0.1540.0000.0000.0000.000
45A45ARG10.8530.9245.6252.0702.0700.0000.0000.0000.000
46A46ALA00.0560.0408.476-0.386-0.3860.0000.0000.0000.000
47A47LYS10.8620.9276.7381.5001.5000.0000.0000.0000.000
48A48TYR0-0.023-0.02611.547-0.076-0.0760.0000.0000.0000.000
49A49ILE00.0180.01012.0530.0270.0270.0000.0000.0000.000
50A50VAL0-0.0040.00716.092-0.008-0.0080.0000.0000.0000.000
51A51ALA0-0.0070.00419.8380.0310.0310.0000.0000.0000.000
52A52GLY00.0140.00721.818-0.003-0.0030.0000.0000.0000.000
53A53PRO0-0.004-0.02125.5860.0010.0010.0000.0000.0000.000
54A54GLY00.0470.02327.851-0.011-0.0110.0000.0000.0000.000
55A55ALA0-0.044-0.00922.909-0.008-0.0080.0000.0000.0000.000
56A56ASP-1-0.932-0.97423.864-0.193-0.1930.0000.0000.0000.000
57A57GLU-1-0.949-0.98025.320-0.153-0.1530.0000.0000.0000.000
58A58PHE0-0.062-0.02121.150-0.003-0.0030.0000.0000.0000.000
59A59GLU-1-0.904-0.95524.710-0.219-0.2190.0000.0000.0000.000
60A60GLY0-0.013-0.01322.934-0.002-0.0020.0000.0000.0000.000
61A61THR00.0070.01921.6410.0170.0170.0000.0000.0000.000
62A62LEU0-0.025-0.01514.159-0.039-0.0390.0000.0000.0000.000
63A63GLU-1-0.842-0.90217.553-0.417-0.4170.0000.0000.0000.000
64A64LEU0-0.023-0.00510.783-0.113-0.1130.0000.0000.0000.000
65A65GLY00.0080.00314.7530.1080.1080.0000.0000.0000.000
66A66TYR00.0150.00914.756-0.069-0.0690.0000.0000.0000.000
67A67GLN00.0260.03016.9480.0470.0470.0000.0000.0000.000
68A68ILE0-0.002-0.00319.167-0.022-0.0220.0000.0000.0000.000
69A69GLY00.0090.00621.7760.0170.0170.0000.0000.0000.000
70A70PHE00.001-0.01224.062-0.002-0.0020.0000.0000.0000.000
71A71PRO0-0.0320.00226.8440.0020.0020.0000.0000.0000.000
72A72TRP00.007-0.00230.2080.0050.0050.0000.0000.0000.000
73A73SER00.0660.02731.771-0.010-0.0100.0000.0000.0000.000
74A74LEU0-0.062-0.02934.0530.0080.0080.0000.0000.0000.000
75A75GLY00.0390.02835.730-0.004-0.0040.0000.0000.0000.000
76A76VAL0-0.028-0.03038.4190.0040.0040.0000.0000.0000.000
77A77GLY00.0310.02740.782-0.001-0.0010.0000.0000.0000.000
78A78ILE0-0.031-0.02543.4890.0020.0020.0000.0000.0000.000
79A79ASN0-0.011-0.00446.5910.0020.0020.0000.0000.0000.000
80A80PHE00.0170.00550.0830.0020.0020.0000.0000.0000.000
81A81SER0-0.034-0.01552.780-0.001-0.0010.0000.0000.0000.000
82A82TYR00.0620.00656.2560.0010.0010.0000.0000.0000.000
83A83THR0-0.050-0.01259.830-0.001-0.0010.0000.0000.0000.000
84A84THR00.0140.01163.0150.0010.0010.0000.0000.0000.000
85A85PRO00.0030.00366.239-0.001-0.0010.0000.0000.0000.000
86A86ASN00.003-0.01569.2660.0000.0000.0000.0000.0000.000
87A87ILE0-0.013-0.00771.3320.0000.0000.0000.0000.0000.000
88A88LEU00.0020.02470.9060.0000.0000.0000.0000.0000.000
89A89ILE0-0.034-0.02174.7090.0000.0000.0000.0000.0000.000
90A90ASP-1-0.922-0.96674.901-0.023-0.0230.0000.0000.0000.000
91A91ASP-1-0.889-0.92977.023-0.021-0.0210.0000.0000.0000.000
92A92GLY0-0.027-0.01280.0610.0010.0010.0000.0000.0000.000
93A93ASP-1-0.829-0.88582.335-0.016-0.0160.0000.0000.0000.000
94A94ILE00.003-0.01583.9490.0000.0000.0000.0000.0000.000
95A95THR0-0.081-0.06486.8570.0000.0000.0000.0000.0000.000
96A96ARG10.8750.93489.7300.0150.0150.0000.0000.0000.000
97A97PRO00.0000.03589.2260.0000.0000.0000.0000.0000.000
98A98PRO0-0.036-0.02985.2120.0000.0000.0000.0000.0000.000
99A99PHE00.002-0.04085.3290.0000.0000.0000.0000.0000.000
100A100GLY00.0720.04482.8470.0000.0000.0000.0000.0000.000
101A101LEU0-0.012-0.00780.1790.0000.0000.0000.0000.0000.000
102A102ASN0-0.047-0.03080.7210.0000.0000.0000.0000.0000.000
103A103SER0-0.032-0.01378.6300.0000.0000.0000.0000.0000.000
104A104VAL00.0060.01174.8590.0000.0000.0000.0000.0000.000
105A105ILE00.0180.02169.9440.0000.0000.0000.0000.0000.000
106A106THR0-0.027-0.02068.6840.0000.0000.0000.0000.0000.000
107A107PRO0-0.0180.00365.103-0.001-0.0010.0000.0000.0000.000
108A108ASN00.014-0.01461.1380.0020.0020.0000.0000.0000.000
109A109LEU00.0120.00664.1780.0000.0000.0000.0000.0000.000
110A110PHE0-0.026-0.00461.6380.0010.0010.0000.0000.0000.000
111A111PRO0-0.011-0.00858.005-0.001-0.0010.0000.0000.0000.000
112A112GLY00.0070.00956.6230.0010.0010.0000.0000.0000.000
113A113VAL0-0.016-0.01150.100-0.001-0.0010.0000.0000.0000.000
114A114SER0-0.034-0.00351.1130.0000.0000.0000.0000.0000.000
115A115ILE00.006-0.01143.144-0.001-0.0010.0000.0000.0000.000
116A116SER00.0210.01645.8710.0020.0020.0000.0000.0000.000
117A117ALA0-0.043-0.02440.677-0.002-0.0020.0000.0000.0000.000
118A118ASP-1-0.900-0.93141.090-0.065-0.0650.0000.0000.0000.000
119A119LEU0-0.023-0.02735.323-0.004-0.0040.0000.0000.0000.000
120A120GLY00.0220.01637.2720.0040.0040.0000.0000.0000.000
121A121ASN0-0.023-0.02035.2460.0020.0020.0000.0000.0000.000
122A122GLY00.0200.01331.6930.0020.0020.0000.0000.0000.000
123A123PRO0-0.039-0.01929.4900.0040.0040.0000.0000.0000.000
124A124GLY0-0.0050.01429.876-0.004-0.0040.0000.0000.0000.000
125A125ILE0-0.060-0.03623.689-0.007-0.0070.0000.0000.0000.000
126A126GLN00.0450.02424.8130.0040.0040.0000.0000.0000.000
127A127GLU-1-0.869-0.93420.746-0.452-0.4520.0000.0000.0000.000
128A128VAL0-0.0260.00020.0180.0330.0330.0000.0000.0000.000
129A129ALA00.0350.01319.209-0.055-0.0550.0000.0000.0000.000
130A130THR0-0.054-0.05815.3480.0600.0600.0000.0000.0000.000
131A131PHE0-0.034-0.02013.1530.0370.0370.0000.0000.0000.000
132A132SER0-0.045-0.06118.335-0.043-0.0430.0000.0000.0000.000
133A133VAL0-0.026-0.01518.5420.0410.0410.0000.0000.0000.000
134A134ASP-1-0.868-0.92420.946-0.306-0.3060.0000.0000.0000.000
135A135VAL0-0.098-0.04518.027-0.017-0.0170.0000.0000.0000.000
136A136SER00.0300.01021.4730.0110.0110.0000.0000.0000.000
137A137GLY00.0180.02621.805-0.006-0.0060.0000.0000.0000.000
138A138ALA00.0400.00720.424-0.037-0.0370.0000.0000.0000.000
139A139GLU-1-0.980-0.98814.805-0.371-0.3710.0000.0000.0000.000
140A140GLY00.0480.03314.8630.0580.0580.0000.0000.0000.000
141A141GLY00.0280.01012.826-0.092-0.0920.0000.0000.0000.000
142A142VAL0-0.080-0.02512.9400.0690.0690.0000.0000.0000.000
143A143ALA0-0.016-0.00510.034-0.210-0.2100.0000.0000.0000.000
144A144VAL00.0130.01810.7750.1880.1880.0000.0000.0000.000
145A145SER0-0.024-0.02110.925-0.134-0.1340.0000.0000.0000.000
146A146ASN0-0.009-0.01912.6590.0530.0530.0000.0000.0000.000
147A147ALA00.0440.03415.0330.0590.0590.0000.0000.0000.000
148A148HIS0-0.065-0.04316.972-0.029-0.0290.0000.0000.0000.000
149A149GLY00.0180.02219.738-0.019-0.0190.0000.0000.0000.000
150A150THR0-0.064-0.04820.8840.0270.0270.0000.0000.0000.000
151A151VAL00.0130.01123.760-0.009-0.0090.0000.0000.0000.000
152A152THR0-0.014-0.04426.3650.0120.0120.0000.0000.0000.000
153A153GLY00.0210.02729.693-0.004-0.0040.0000.0000.0000.000
154A154ALA0-0.0150.00028.057-0.001-0.0010.0000.0000.0000.000
155A155ALA00.012-0.01030.0590.0100.0100.0000.0000.0000.000
156A156GLY0-0.019-0.02229.607-0.006-0.0060.0000.0000.0000.000
157A157GLY0-0.008-0.00925.572-0.002-0.0020.0000.0000.0000.000
158A158VAL0-0.035-0.01021.495-0.002-0.0020.0000.0000.0000.000
159A159LEU00.0140.01119.439-0.001-0.0010.0000.0000.0000.000
160A160LEU00.0250.00916.1820.0070.0070.0000.0000.0000.000
161A161ARG10.8950.94915.6350.4160.4160.0000.0000.0000.000
162A162PRO00.0200.02311.1640.0680.0680.0000.0000.0000.000
163A163PHE00.0130.00313.510-0.034-0.0340.0000.0000.0000.000
164A164ALA00.0360.01512.070-0.059-0.0590.0000.0000.0000.000
165A165ARG10.7860.88314.0730.5240.5240.0000.0000.0000.000
166A166LEU00.0200.01817.525-0.024-0.0240.0000.0000.0000.000
167A167ILE0-0.030-0.02419.2400.0240.0240.0000.0000.0000.000
168A168ALA00.0610.03423.0290.0040.0040.0000.0000.0000.000
169A169SER0-0.031-0.01224.9450.0100.0100.0000.0000.0000.000
170A170THR0-0.056-0.03527.8660.0200.0200.0000.0000.0000.000
171A171GLY0-0.033-0.01828.2970.0150.0150.0000.0000.0000.000
172A172ASP-1-0.828-0.91925.649-0.257-0.2570.0000.0000.0000.000
173A173SER0-0.039-0.01422.725-0.024-0.0240.0000.0000.0000.000
174A174VAL00.0410.03317.8100.0160.0160.0000.0000.0000.000
175A175THR0-0.037-0.03417.085-0.011-0.0110.0000.0000.0000.000
176A176THR0-0.0050.00112.0410.1030.1030.0000.0000.0000.000
177A177TYR0-0.008-0.02014.202-0.029-0.0290.0000.0000.0000.000
178A178GLY00.0030.00111.089-0.082-0.0820.0000.0000.0000.000
179A179GLU-1-0.954-0.98111.199-0.255-0.2550.0000.0000.0000.000
180A180PRO0-0.064-0.03612.475-0.064-0.0640.0000.0000.0000.000
181A181TRP00.0730.0418.3740.1880.1880.0000.0000.0000.000
182A182ASN0-0.005-0.02215.1330.0140.0140.0000.0000.0000.000
183A183MET00.0140.02515.9200.0330.0330.0000.0000.0000.000
184A184ASN0-0.0320.01020.3200.0490.0490.0000.0000.0000.000