FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

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FMODB ID: 7J85K

Calculation Name: 1Q88-A-Xray315

Preferred Name:
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Target Type:
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Ligand Name:
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ligand 3-letter code:
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PDB ID: 1Q88

Chain ID: A

ChEMBL ID:
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UniProt ID: Q95VR4

Base Structure: X-ray

Registration Date: 2021-09-06

Reference: C. Watanabe, S. Koyama, K. Kamisaka, D. Takaya, T. Honma et. al., Interaction energy analysis of Apo structure dataset on FMODB, To be pubulished.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 1.20200129
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 194
LigandCharge
Software ABINIT-MP - Open Ver.1 Rev. 15 / 20190524
Total energy (hartree)
FMO2-HF: Electronic energy -2226213.638472
FMO2-HF: Nuclear repulsion 2147184.461459
FMO2-HF: Total energy -79029.177013
FMO2-MP2: Total energy -79257.526658


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:147:ACE )


Summations of interaction energy for fragment #1(A:147:ACE )
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-0.7270.046000000000001-0.005-0.417-0.351-0.001
Interaction energy analysis for fragmet #1(A:147:ACE )
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.022 / q_NPA : -0.021
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A149CYS 0-0.113-0.0413.8591.3012.120-0.005-0.376-0.438-0.001
4A150ILE 00.0330.0306.6960.0030.0030.0000.0000.0000.000
5A151GLY 00.0950.03610.1730.0780.0780.0000.0000.0000.000
6A152ASN 0-0.045-0.00311.4390.0550.0550.0000.0000.0000.000
7A153SER 0-0.028-0.04013.3600.0080.0080.0000.0000.0000.000
8A154THR 0-0.011-0.00214.4130.0190.0190.0000.0000.0000.000
9A155PRO 00.0950.02813.826-0.022-0.0220.0000.0000.0000.000
10A156ASN 00.0010.00314.903-0.008-0.0080.0000.0000.0000.000
11A157GLU -1-0.863-0.91516.294-0.147-0.1470.0000.0000.0000.000
12A158GLN 00.004-0.0209.7350.0520.0520.0000.0000.0000.000
13A159GLU -1-0.941-0.97313.045-0.018-0.0180.0000.0000.0000.000
14A160THR 0-0.055-0.04014.678-0.002-0.0020.0000.0000.0000.000
15A161PHE 0-0.016-0.00311.9940.0030.0030.0000.0000.0000.000
16A162ARG 10.9470.9766.8560.4070.4070.0000.0000.0000.000
17A163ALA 00.0510.03113.3500.0060.0060.0000.0000.0000.000
18A164LYS 10.8840.94916.6430.1240.1240.0000.0000.0000.000
19A165VAL 00.0020.00313.1390.0040.0040.0000.0000.0000.000
20A166ASP -1-0.875-0.94114.246-0.116-0.1160.0000.0000.0000.000
21A167GLU -1-0.922-0.96016.541-0.083-0.0830.0000.0000.0000.000
22A168ILE 0-0.002-0.01519.0940.0110.0110.0000.0000.0000.000
23A169TRP 00.0060.00516.635-0.014-0.0140.0000.0000.0000.000
24A170PHE 0-0.0330.00018.7460.0140.0140.0000.0000.0000.000
25A171ARG 10.8900.94321.2450.0870.0870.0000.0000.0000.000
26A172LEU 0-0.033-0.00120.5830.0050.0050.0000.0000.0000.000
27A173THR 0-0.035-0.03620.0890.0100.0100.0000.0000.0000.000
28A174GLN 0-0.0070.00022.8790.0050.0050.0000.0000.0000.000
29A175LYS 10.8960.96620.1170.0790.0790.0000.0000.0000.000
30A176THR 00.0330.00817.996-0.013-0.0130.0000.0000.0000.000
31A177ASP -1-0.869-0.95113.178-0.093-0.0930.0000.0000.0000.000
32A178GLY 0-0.0310.00315.2300.0010.0010.0000.0000.0000.000
33A179THR 0-0.013-0.01715.610-0.024-0.0240.0000.0000.0000.000
34A180VAL 0-0.028-0.01717.8450.0230.0230.0000.0000.0000.000
35A181MET 00.0150.00920.514-0.011-0.0110.0000.0000.0000.000
36A182ARG 10.8740.92020.7480.1780.1780.0000.0000.0000.000
37A183ASP -1-0.874-0.94522.303-0.111-0.1110.0000.0000.0000.000
38A184PHE 0-0.063-0.02723.7780.0040.0040.0000.0000.0000.000
39A185LEU 00.012-0.01118.0380.0010.0010.0000.0000.0000.000
40A186ILE 00.0000.00721.706-0.003-0.0030.0000.0000.0000.000
41A187GLU -1-0.866-0.92624.189-0.079-0.0790.0000.0000.0000.000
42A188LYS 10.9380.96424.7920.0880.0880.0000.0000.0000.000
43A189ALA 00.0070.00522.2670.0020.0020.0000.0000.0000.000
44A190ALA 0-0.0020.00024.2860.0020.0020.0000.0000.0000.000
45A191GLU -1-0.926-0.96927.281-0.074-0.0740.0000.0000.0000.000
46A192TYR 0-0.049-0.00924.3820.0120.0120.0000.0000.0000.000
47A193PHE 00.011-0.00920.979-0.004-0.0040.0000.0000.0000.000
48A194LYS 10.8090.92326.5890.0830.0830.0000.0000.0000.000
49A195GLN 00.0530.02729.6620.0000.0000.0000.0000.0000.000
50A196PRO 0-0.008-0.01832.4480.0020.0020.0000.0000.0000.000
51A197GLU -1-0.894-0.95635.848-0.073-0.0730.0000.0000.0000.000
52A198GLN 00.0030.00829.5300.0010.0010.0000.0000.0000.000
53A199PRO 00.0140.00734.7140.0000.0000.0000.0000.0000.000
54A200LYS 10.8710.91431.3680.0730.0730.0000.0000.0000.000
55A201GLN 00.017-0.00331.587-0.006-0.0060.0000.0000.0000.000
56A202ASN 00.0300.03831.878-0.007-0.0070.0000.0000.0000.000
57A203ALA 00.0340.02028.367-0.007-0.0070.0000.0000.0000.000
58A204ILE 0-0.006-0.00627.303-0.012-0.0120.0000.0000.0000.000
59A205GLU -1-0.940-0.97526.944-0.106-0.1060.0000.0000.0000.000
60A206VAL 0-0.0060.00525.182-0.009-0.0090.0000.0000.0000.000
61A207ILE 00.0280.00821.825-0.016-0.0160.0000.0000.0000.000
62A208SER 0-0.034-0.01422.088-0.024-0.0240.0000.0000.0000.000
63A209ALA 00.0170.00522.684-0.011-0.0110.0000.0000.0000.000
64A210ILE 0-0.0110.01118.681-0.012-0.0120.0000.0000.0000.000
65A211MET 0-0.0420.00617.733-0.051-0.0510.0000.0000.0000.000
66A212ALA 0-0.022-0.02118.2240.0270.0270.0000.0000.0000.000
67A213PRO 0-0.029-0.02316.004-0.043-0.0430.0000.0000.0000.000
68A214GLN 00.0130.01118.9110.0100.0100.0000.0000.0000.000
69A215GLU -1-0.929-0.96320.964-0.159-0.1590.0000.0000.0000.000
70A216GLU -1-0.904-0.94716.032-0.274-0.2740.0000.0000.0000.000
71A217GLN 00.008-0.02120.3670.0000.0000.0000.0000.0000.000
72A218THR 0-0.050-0.00718.5800.0000.0000.0000.0000.0000.000
73A219LYS 10.9500.98116.4390.2620.2620.0000.0000.0000.000
74A220SER 0-0.012-0.01612.5280.0270.0270.0000.0000.0000.000
75A221LYS 10.9000.95312.0810.1000.1000.0000.0000.0000.000
76A222ALA 00.0100.0088.729-0.042-0.0420.0000.0000.0000.000
77A223ASP -1-0.818-0.91410.408-0.533-0.5330.0000.0000.0000.000
78A224LEU 00.0110.00513.2500.0050.0050.0000.0000.0000.000
79A225TYR 00.0030.0059.037-0.045-0.0450.0000.0000.0000.000
80A226LYS 10.9950.98410.5450.7030.7030.0000.0000.0000.000
81A227PHE 00.002-0.00811.9470.0470.0470.0000.0000.0000.000
82A228LEU 00.001-0.00915.3650.0360.0360.0000.0000.0000.000
83A229ALA 0-0.0280.00012.4510.0230.0230.0000.0000.0000.000
84A230MET 0-0.043-0.00514.4410.0440.0440.0000.0000.0000.000
85A231PHE 0-0.024-0.02116.4330.0390.0390.0000.0000.0000.000
86A232GLY 0-0.070-0.03119.6480.0180.0180.0000.0000.0000.000
87A233PRO 00.0630.05819.960-0.016-0.0160.0000.0000.0000.000
88A234TYR 00.008-0.01421.9210.0010.0010.0000.0000.0000.000
89A235GLU -1-0.879-0.93923.267-0.118-0.1180.0000.0000.0000.000
90A236THR 0-0.0030.00325.5780.0060.0060.0000.0000.0000.000
91A237ILE 00.0240.02020.419-0.002-0.0020.0000.0000.0000.000
92A238MET 00.010-0.00124.292-0.010-0.0100.0000.0000.0000.000
93A239LEU 0-0.024-0.00727.0280.0040.0040.0000.0000.0000.000
94A240LYS 10.8580.94521.5650.1860.1860.0000.0000.0000.000
95A241ILE 0-0.0180.00422.682-0.003-0.0030.0000.0000.0000.000
96A242ALA 0-0.014-0.01324.9290.0020.0020.0000.0000.0000.000
97A243SER 0-0.0130.00527.2290.0010.0010.0000.0000.0000.000
98A244LEU 00.0390.01021.5290.0040.0040.0000.0000.0000.000
99A245LEU 00.008-0.01723.8950.0030.0030.0000.0000.0000.000
100A246LEU 0-0.0410.01426.9790.0080.0080.0000.0000.0000.000
101A247ILE 00.0300.01328.0040.0050.0050.0000.0000.0000.000
102A248SER 00.0060.00725.8990.0030.0030.0000.0000.0000.000
103A249ASN 0-0.025-0.02228.0280.0020.0020.0000.0000.0000.000
104A250ASN 0-0.014-0.00230.8530.0080.0080.0000.0000.0000.000
105A251LYS 10.8150.92030.2150.0950.0950.0000.0000.0000.000
106A252GLY 00.0140.00530.8700.0000.0000.0000.0000.0000.000
107A253HIS 0-0.043-0.01128.405-0.005-0.0050.0000.0000.0000.000
108A254TRP 00.0050.01522.613-0.010-0.0100.0000.0000.0000.000
109A255LEU 0-0.027-0.01320.169-0.015-0.0150.0000.0000.0000.000
110A256THR 0-0.044-0.00818.8570.0090.0090.0000.0000.0000.000
111A257PHE 00.047-0.00718.008-0.023-0.0230.0000.0000.0000.000
112A258ASP -1-0.943-0.95317.003-0.271-0.2710.0000.0000.0000.000
113A259PRO 00.0390.00212.990-0.034-0.0340.0000.0000.0000.000
114A260GLN 0-0.062-0.03713.6120.0390.0390.0000.0000.0000.000
115A261ALA 00.1000.05215.3210.0400.0400.0000.0000.0000.000
116A262GLU -1-0.953-0.97312.687-0.348-0.3480.0000.0000.0000.000
117A263LYS 10.8700.92813.0190.2570.2570.0000.0000.0000.000
118A264ASN 00.0440.02817.4480.0380.0380.0000.0000.0000.000
119A265ALA 00.0130.02019.1320.0160.0160.0000.0000.0000.000
120A266ASN 0-0.027-0.03320.0600.0070.0070.0000.0000.0000.000
121A267ASN 0-0.030-0.00221.9370.0040.0040.0000.0000.0000.000
122A268GLN 0-0.0120.02624.0530.0150.0150.0000.0000.0000.000
123A269ARG 10.9700.95526.4710.0590.0590.0000.0000.0000.000
124A270ASP -1-0.954-0.96227.867-0.072-0.0720.0000.0000.0000.000
125A271SER 0-0.039-0.02126.6240.0010.0010.0000.0000.0000.000
126A272ILE 00.011-0.01426.2530.0000.0000.0000.0000.0000.000
127A273SER 00.0020.00721.1510.0040.0040.0000.0000.0000.000
128A274GLY 00.0090.00020.4550.0020.0020.0000.0000.0000.000
129A275TRP 00.0170.01213.9970.0470.0470.0000.0000.0000.000
130A276PHE 00.0540.01913.8480.0220.0220.0000.0000.0000.000
131A277ASP -1-0.836-0.9008.972-0.991-0.9910.0000.0000.0000.000
132A278GLN 00.011-0.0148.234-0.075-0.0750.0000.0000.0000.000
133A279ASN 0-0.028-0.0264.348-1.273-1.3190.000-0.0410.0870.000
134A280GLU -1-0.891-0.9526.054-0.882-0.8820.0000.0000.0000.000
135A281PRO 00.0050.0037.8260.2720.2720.0000.0000.0000.000
136A282ASN 00.0000.00711.0740.0300.0300.0000.0000.0000.000
137A283CYS 0-0.069-0.02612.5280.1120.1120.0000.0000.0000.000
138A284LEU 0-0.0090.01214.249-0.039-0.0390.0000.0000.0000.000
139A285ILE 0-0.015-0.02013.4510.0420.0420.0000.0000.0000.000
140A286LEU 00.008-0.01117.7030.0080.0080.0000.0000.0000.000
141A287LYS 10.8850.95220.7530.1540.1540.0000.0000.0000.000
142A288THR 0-0.016-0.02722.4100.0090.0090.0000.0000.0000.000
143A289PRO 00.0330.00626.1480.0010.0010.0000.0000.0000.000
144A290THR 0-0.027-0.00327.9390.0060.0060.0000.0000.0000.000
145A291GLY 00.0270.01225.1970.0070.0070.0000.0000.0000.000
146A292ILE 0-0.034-0.00818.455-0.006-0.0060.0000.0000.0000.000
147A293ARG 10.9350.98521.3430.1370.1370.0000.0000.0000.000
148A294LYS 10.9580.98013.3810.2580.2580.0000.0000.0000.000
149A295ILE 00.0000.02318.4490.0240.0240.0000.0000.0000.000
150A296TRP 0-0.040-0.02513.018-0.006-0.0060.0000.0000.0000.000
151A297ASN 00.0310.00216.9020.0690.0690.0000.0000.0000.000
152A298LYS 10.8930.95316.9530.1380.1380.0000.0000.0000.000
153A299PRO 0-0.018-0.01714.9810.0260.0260.0000.0000.0000.000
154A300LEU 00.011-0.00118.0590.0140.0140.0000.0000.0000.000
155A301ILE 0-0.0320.00020.6620.0180.0180.0000.0000.0000.000
156A302GLU -1-0.894-0.95823.585-0.113-0.1130.0000.0000.0000.000
157A303ALA 0-0.013-0.02326.0670.0020.0020.0000.0000.0000.000
158A304THR 0-0.0120.00127.6080.0020.0020.0000.0000.0000.000
159A305GLY 0-0.0090.00628.2610.0080.0080.0000.0000.0000.000
160A306GLN 0-0.032-0.03527.170-0.004-0.0040.0000.0000.0000.000
161A307TYR 0-0.020-0.01122.597-0.004-0.0040.0000.0000.0000.000
162A308LEU 00.0000.01521.408-0.024-0.0240.0000.0000.0000.000
163A309MET 0-0.041-0.02218.9680.0220.0220.0000.0000.0000.000
164A310ASP -1-0.775-0.88820.174-0.129-0.1290.0000.0000.0000.000
165A311GLU -1-0.887-0.96719.304-0.121-0.1210.0000.0000.0000.000
166A312ASN 0-0.092-0.03520.2220.0200.0200.0000.0000.0000.000
167A313GLY 0-0.0140.00022.1990.0100.0100.0000.0000.0000.000
168A314GLU -1-0.976-0.98023.199-0.068-0.0680.0000.0000.0000.000
169A315LYS 10.9110.94524.3070.0680.0680.0000.0000.0000.000
170A316TYR 0-0.016-0.01724.7970.0100.0100.0000.0000.0000.000
171A317ASP -1-0.797-0.92326.801-0.090-0.0900.0000.0000.0000.000
172A318SER 0-0.007-0.01026.971-0.003-0.0030.0000.0000.0000.000
173A319TRP 00.017-0.00120.0610.0020.0020.0000.0000.0000.000
174A320ASP -1-0.873-0.94826.807-0.106-0.1060.0000.0000.0000.000
175A321LYN 00.0690.06630.0560.0000.0000.0000.0000.0000.000
176A322TYR 0-0.018-0.00924.1530.0000.0000.0000.0000.0000.000
177A323PHE 0-0.041-0.03724.407-0.001-0.0010.0000.0000.0000.000
178A324GLU -1-0.934-0.94829.545-0.067-0.0670.0000.0000.0000.000
179A325MET 0-0.056-0.02030.1100.0080.0080.0000.0000.0000.000
180A326LYS 10.8320.90527.2240.0940.0940.0000.0000.0000.000
181A327PRO 00.0350.01829.142-0.009-0.0090.0000.0000.0000.000
182A328ILE 00.0340.03327.2860.0000.0000.0000.0000.0000.000
183A329GLU -1-0.948-0.99129.749-0.085-0.0850.0000.0000.0000.000
184A330THR 0-0.020-0.02233.5750.0060.0060.0000.0000.0000.000
185A331TYR 00.015-0.00637.617-0.001-0.0010.0000.0000.0000.000
186A332LEU 0-0.059-0.03436.9010.0020.0020.0000.0000.0000.000
187A333THR 0-0.0070.00840.3350.0000.0000.0000.0000.0000.000
188A334ALA 00.0000.02042.651-0.001-0.0010.0000.0000.0000.000
189A335TYR 00.037-0.00445.679-0.001-0.0010.0000.0000.0000.000
190A336PRO 0-0.033-0.01647.6740.0010.0010.0000.0000.0000.000
191A337THR 00.0320.02749.730-0.001-0.0010.0000.0000.0000.000
192A338PHE 0-0.042-0.02652.0950.0010.0010.0000.0000.0000.000
193A339ALA 00.009-0.00254.5520.0000.0000.0000.0000.0000.000
194A340NME 0-0.0030.01655.9370.0010.0010.0000.0000.0000.000