FMODB ID: 7JKJK
Calculation Name: 1L2Y-A-MD57-63400ps
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-13
Reference:
Modeling method
Optimization | BaseStructure_original |
---|---|
Restraint | BaseStructure_original |
Protonation | BaseStructure_original |
Complement | No |
Water | No |
Procedure | Manual calculation |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 10 |
LigandCharge | |
Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
FMO2-HF: Electronic energy | -25155.330058 |
---|---|
FMO2-HF: Nuclear repulsion | 20553.021573 |
FMO2-HF: Total energy | -4602.308484 |
FMO2-MP2: Total energy | -4615.758938 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-142.896 | -131.15 | 17.345 | -12.233 | -16.861 | -0.136 |
Interaction energy analysis for fragmet #1(:1:GLN )
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | 3 | GLN | 0 | 0.130 | 0.066 | 2.973 | -3.160 | -0.761 | 0.146 | -1.033 | -1.512 | -0.007 | |
4 | 4 | GLN | 0 | -0.066 | -0.032 | 5.524 | 6.483 | 6.483 | 0.000 | 0.000 | 0.000 | 0.000 | |
5 | 5 | GLN | 0 | -0.002 | -0.042 | 5.681 | -5.649 | -5.649 | 0.000 | 0.000 | 0.000 | 0.000 | |
6 | 6 | GLN | 0 | 0.026 | 0.042 | 2.498 | -1.427 | -0.453 | 0.236 | -0.366 | -0.844 | 0.000 | |
7 | 7 | GLN | 0 | -0.025 | 0.000 | 2.029 | -16.004 | -14.340 | 5.043 | -3.179 | -3.528 | -0.044 | |
8 | 8 | GLN | 0 | 0.010 | -0.020 | 2.251 | -30.091 | -25.862 | 6.869 | -4.462 | -6.637 | -0.030 | |
9 | 9 | GLN | 0 | -0.038 | -0.007 | 3.077 | 2.842 | 2.663 | 0.102 | 0.758 | -0.682 | -0.003 | |
10 | 10 | GLN | -1 | -0.863 | -0.922 | 2.123 | -95.890 | -93.231 | 4.949 | -3.951 | -3.658 | -0.052 |