FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 7JR8K

Calculation Name: 3CTA-A-Xray312

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 3CTA

Chain ID: A

ChEMBL ID:

UniProt ID: Q9HJA6

Base Structure: X-ray

Registration Date: 2021-09-06

Reference: C. Watanabe, S. Koyama, K. Kamisaka, D. Takaya, T. Honma et. al., Interaction energy analysis of Apo structure dataset on FMODB, To be pubulished.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 1.20200116
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 198
LigandCharge
Software ABINIT-MP - Open Ver.1 Rev. 15 / 20190524
Total energy (hartree)
FMO2-HF: Electronic energy -2031601.062392
FMO2-HF: Nuclear repulsion 1956065.632489
FMO2-HF: Total energy -75535.429903
FMO2-MP2: Total energy -75759.647495


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:4:ACE )


Summations of interaction energy for fragment #1(A:4:ACE )
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
1.0232.8780.192-0.899-1.1460
Interaction energy analysis for fragmet #1(A:4:ACE )
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.010 / q_NPA : -0.008
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A6GLN 00.0840.0513.8850.7341.761-0.004-0.548-0.475-0.001
4A7TYR 0-0.029-0.0382.842-0.1690.2440.183-0.193-0.4020.001
5A8TYR 00.0460.0533.4440.0350.3550.013-0.149-0.1840.000
6A9ARG 10.9180.9524.9301.4591.5540.000-0.009-0.0850.000
7A10ALA 00.0140.0137.6040.1690.1690.0000.0000.0000.000
8A11ILE 00.0090.0025.6640.0750.0750.0000.0000.0000.000
9A12LYS 10.9690.9878.8370.5270.5270.0000.0000.0000.000
10A13LYS 10.9150.96710.8430.2880.2880.0000.0000.0000.000
11A14ILE 0-0.024-0.01711.4770.0420.0420.0000.0000.0000.000
12A15LYS 10.8690.92213.1080.0720.0720.0000.0000.0000.000
13A16GLU -1-0.909-0.95314.758-0.215-0.2150.0000.0000.0000.000
14A17ALA 0-0.024-0.02116.6840.0150.0150.0000.0000.0000.000
15A18ALA 0-0.094-0.03117.7180.0140.0140.0000.0000.0000.000
16A19GLU -1-0.910-0.95219.421-0.042-0.0420.0000.0000.0000.000
17A20ALA 00.0020.00220.329-0.002-0.0020.0000.0000.0000.000
18A21SER 0-0.052-0.01221.9580.0120.0120.0000.0000.0000.000
19A22ASN 00.0590.01817.700-0.021-0.0210.0000.0000.0000.000
20A23ARG 10.9170.96618.007-0.001-0.0010.0000.0000.0000.000
21A24ALA 00.0930.04318.136-0.013-0.0130.0000.0000.0000.000
22A25TYR 0-0.017-0.01119.8640.0140.0140.0000.0000.0000.000
23A26LEU 00.0350.02416.257-0.012-0.0120.0000.0000.0000.000
24A27THR 00.0260.03219.7180.0140.0140.0000.0000.0000.000
25A28SER 00.0560.01017.292-0.012-0.0120.0000.0000.0000.000
26A29SER 00.0160.00417.988-0.008-0.0080.0000.0000.0000.000
27A30LYS 10.9891.00620.0030.0320.0320.0000.0000.0000.000
28A31LEU 00.0300.01212.365-0.012-0.0120.0000.0000.0000.000
29A32ALA 0-0.023-0.01815.629-0.026-0.0260.0000.0000.0000.000
30A33ASP -1-0.913-0.95316.863-0.101-0.1010.0000.0000.0000.000
31A34MET 0-0.080-0.03616.465-0.015-0.0150.0000.0000.0000.000
32A35LEU 0-0.049-0.03411.068-0.030-0.0300.0000.0000.0000.000
33A36GLY 00.0220.04814.366-0.040-0.0400.0000.0000.0000.000
34A37ILE 0-0.053-0.02012.3320.0050.0050.0000.0000.0000.000
35A38SER 00.0710.02916.0540.0170.0170.0000.0000.0000.000
36A39GLN 00.0640.00216.8780.0100.0100.0000.0000.0000.000
37A40GLN 00.0150.00317.8190.0020.0020.0000.0000.0000.000
38A41SER 00.0240.01013.2710.0340.0340.0000.0000.0000.000
39A42ALA 00.0300.02813.0470.0410.0410.0000.0000.0000.000
40A43SER 0-0.060-0.04313.9550.0350.0350.0000.0000.0000.000
41A44ARG 10.8400.89012.083-0.367-0.3670.0000.0000.0000.000
42A45ILE 00.0470.0298.6370.0690.0690.0000.0000.0000.000
43A46ILE 00.0020.00210.4560.0710.0710.0000.0000.0000.000
44A47ILE 0-0.009-0.00712.9300.0210.0210.0000.0000.0000.000
45A48ASP -1-0.768-0.8379.2000.5590.5590.0000.0000.0000.000
46A49LEU 0-0.011-0.0076.7190.0970.0970.0000.0000.0000.000
47A50GLU -1-0.863-0.9159.8860.1920.1920.0000.0000.0000.000
48A51LYS 10.9190.95613.414-0.312-0.3120.0000.0000.0000.000
49A52ASN 0-0.064-0.0309.615-0.020-0.0200.0000.0000.0000.000
50A53GLY 00.0440.02410.9270.0540.0540.0000.0000.0000.000
51A54TYR 0-0.0010.0236.3680.0240.0240.0000.0000.0000.000
52A55ILE 00.004-0.00810.508-0.084-0.0840.0000.0000.0000.000
53A56THR 00.0200.01213.3140.0180.0180.0000.0000.0000.000
54A57ARG 10.8790.93216.853-0.176-0.1760.0000.0000.0000.000
55A58THR 0-0.016-0.01218.7960.0000.0000.0000.0000.0000.000
56A59VAL 00.0310.01422.494-0.010-0.0100.0000.0000.0000.000
57A60THR 0-0.0030.00125.113-0.004-0.0040.0000.0000.0000.000
58A61LYS 11.0030.97428.086-0.034-0.0340.0000.0000.0000.000
59A62ARG 10.9530.98929.135-0.019-0.0190.0000.0000.0000.000
60A63GLY 00.0320.02726.322-0.005-0.0050.0000.0000.0000.000
61A64GLN 0-0.041-0.03519.2070.0150.0150.0000.0000.0000.000
62A65ILE 0-0.039-0.02120.747-0.011-0.0110.0000.0000.0000.000
63A66LEU 00.0040.00614.9030.0190.0190.0000.0000.0000.000
64A67ASN 0-0.025-0.02417.235-0.038-0.0380.0000.0000.0000.000
65A68ILE 0-0.0010.01911.4320.0330.0330.0000.0000.0000.000
66A69THR 0-0.030-0.04313.066-0.018-0.0180.0000.0000.0000.000
67A70GLU -1-0.752-0.86914.0940.0570.0570.0000.0000.0000.000
68A71LYS 10.9580.9999.615-0.668-0.6680.0000.0000.0000.000
69A72GLY 0-0.001-0.0099.3870.0470.0470.0000.0000.0000.000
70A73LEU 0-0.027-0.0289.917-0.068-0.0680.0000.0000.0000.000
71A74ASP -1-0.781-0.85611.0360.0790.0790.0000.0000.0000.000
72A75VAL 0-0.0350.0045.330-0.027-0.0270.0000.0000.0000.000
73A76LEU 0-0.045-0.0188.083-0.202-0.2020.0000.0000.0000.000
74A77TYR 00.020-0.00310.297-0.045-0.0450.0000.0000.0000.000
75A78THR 00.006-0.0088.8110.0050.0050.0000.0000.0000.000
76A79GLU -1-0.944-0.9467.012-1.249-1.2490.0000.0000.0000.000
77A80PHE 0-0.028-0.0169.8450.0170.0170.0000.0000.0000.000
78A81ALA 00.0210.02013.3870.0160.0160.0000.0000.0000.000
79A82ASP -1-0.877-0.9459.152-0.401-0.4010.0000.0000.0000.000
80A83LEU 0-0.029-0.02212.3470.0280.0280.0000.0000.0000.000
81A84SER 0-0.046-0.02114.5590.0400.0400.0000.0000.0000.000
82A85ARG 10.8860.95012.2680.2630.2630.0000.0000.0000.000
83A86ILE 0-0.070-0.03613.0570.0190.0190.0000.0000.0000.000
84A87LEU 0-0.030-0.01317.1740.0110.0110.0000.0000.0000.000
85A88ALA 0-0.0200.00819.6400.0170.0170.0000.0000.0000.000
86A89ILE 0-0.041-0.02619.6380.0110.0110.0000.0000.0000.000
87A90LYN 00.0220.00021.440-0.001-0.0010.0000.0000.0000.000
88A91ASN 00.000-0.00619.9340.0070.0070.0000.0000.0000.000
89A92ASN 00.0060.00222.4200.0040.0040.0000.0000.0000.000
90A93VAL 0-0.0090.00522.305-0.003-0.0030.0000.0000.0000.000
91A94VAL 00.0300.02425.6870.0050.0050.0000.0000.0000.000
92A95ILE 0-0.032-0.01025.0790.0000.0000.0000.0000.0000.000
93A96THR 0-0.011-0.02128.3540.0000.0000.0000.0000.0000.000
94A97GLY 00.0190.00330.3320.0020.0020.0000.0000.0000.000
95A98THR 0-0.081-0.03132.218-0.003-0.0030.0000.0000.0000.000
96A99VAL 00.0090.01233.8600.0030.0030.0000.0000.0000.000
97A100THR 0-0.039-0.02132.4020.0000.0000.0000.0000.0000.000
98A101SER 0-0.022-0.03035.744-0.001-0.0010.0000.0000.0000.000
99A102NME 00.0350.04434.7800.0030.0030.0000.0000.0000.000
100A113ACE 00.021-0.00134.6550.0000.0000.0000.0000.0000.000
101A114GLN 00.013-0.01829.8690.0000.0000.0000.0000.0000.000
102A115TYR 00.002-0.01223.909-0.001-0.0010.0000.0000.0000.000
103A116ILE 00.013-0.00229.483-0.004-0.0040.0000.0000.0000.000
104A117ILE 00.0690.04432.764-0.003-0.0030.0000.0000.0000.000
105A118GLN 00.0460.02526.135-0.007-0.0070.0000.0000.0000.000
106A119PHE 0-0.015-0.00226.824-0.003-0.0030.0000.0000.0000.000
107A120GLN 00.0310.01030.832-0.002-0.0020.0000.0000.0000.000
108A121GLU -1-0.965-0.97231.6910.0050.0050.0000.0000.0000.000
109A122LYS 10.8280.91124.450-0.019-0.0190.0000.0000.0000.000
110A123LEU 0-0.082-0.03527.088-0.004-0.0040.0000.0000.0000.000
111A124GLY 00.0100.02830.936-0.002-0.0020.0000.0000.0000.000
112A125ILE 0-0.052-0.03032.340-0.001-0.0010.0000.0000.0000.000
113A126ILE 00.015-0.00435.6430.0030.0030.0000.0000.0000.000
114A127PRO 0-0.028-0.00233.5610.0000.0000.0000.0000.0000.000
115A128TYR 00.0490.03635.5860.0000.0000.0000.0000.0000.000
116A129LEU 0-0.035-0.03537.0970.0020.0020.0000.0000.0000.000
117A130GLY 00.000-0.00435.9850.0030.0030.0000.0000.0000.000
118A131THR 0-0.067-0.01932.174-0.001-0.0010.0000.0000.0000.000
119A132LEU 00.0430.04232.5680.0020.0020.0000.0000.0000.000
120A133ASN 0-0.026-0.02831.1050.0050.0050.0000.0000.0000.000
121A134ILE 0-0.007-0.00630.247-0.003-0.0030.0000.0000.0000.000
122A135LYS 10.9550.99429.352-0.031-0.0310.0000.0000.0000.000
123A136VAL 0-0.0010.00025.855-0.005-0.0050.0000.0000.0000.000
124A137ASP -1-0.791-0.86728.4230.0090.0090.0000.0000.0000.000
125A138GLN 00.031-0.02626.668-0.001-0.0010.0000.0000.0000.000
126A139ALA 00.001-0.00126.151-0.002-0.0020.0000.0000.0000.000
127A140SER 00.0400.02726.496-0.007-0.0070.0000.0000.0000.000
128A141LEU 0-0.0180.00122.367-0.001-0.0010.0000.0000.0000.000
129A142PRO 0-0.028-0.02020.5320.0020.0020.0000.0000.0000.000
130A143GLU -1-0.847-0.92020.371-0.060-0.0600.0000.0000.0000.000
131A144LEU 0-0.0030.00321.057-0.004-0.0040.0000.0000.0000.000
132A145ARG 10.7650.84516.847-0.021-0.0210.0000.0000.0000.000
133A146LYS 10.9490.98116.6680.0770.0770.0000.0000.0000.000
134A147ILE 00.0030.00517.227-0.010-0.0100.0000.0000.0000.000
135A148ARG 10.8870.94016.144-0.062-0.0620.0000.0000.0000.000
136A149GLY 00.0580.05713.1680.0180.0180.0000.0000.0000.000
137A150PHE 0-0.005-0.01213.400-0.031-0.0310.0000.0000.0000.000
138A151ARG 10.9470.95611.6260.1550.1550.0000.0000.0000.000
139A152GLY 00.0370.03116.5650.0180.0180.0000.0000.0000.000
140A153ILE 0-0.024-0.02320.313-0.006-0.0060.0000.0000.0000.000
141A154HIS 0-0.018-0.01118.6970.0040.0040.0000.0000.0000.000
142A155ILE 0-0.042-0.01421.316-0.004-0.0040.0000.0000.0000.000
143A156GLU -1-0.914-0.96021.3610.0690.0690.0000.0000.0000.000
144A157GLY 00.0520.02721.779-0.001-0.0010.0000.0000.0000.000
145A158PHE 0-0.019-0.01623.028-0.006-0.0060.0000.0000.0000.000
146A159LYS 10.8620.92025.421-0.079-0.0790.0000.0000.0000.000
147A160THR 00.0260.03227.292-0.009-0.0090.0000.0000.0000.000
148A161GLU -1-1.040-1.01730.5510.0550.0550.0000.0000.0000.000
149A162ASP -1-0.731-0.86528.9680.0930.0930.0000.0000.0000.000
150A163ARG 10.8700.94125.598-0.102-0.1020.0000.0000.0000.000
151A164THR 0-0.007-0.01221.904-0.010-0.0100.0000.0000.0000.000
152A165PHE 0-0.044-0.02923.7170.0110.0110.0000.0000.0000.000
153A166GLY 0-0.006-0.00320.3850.0020.0020.0000.0000.0000.000
154A167SER 00.0610.04118.554-0.016-0.0160.0000.0000.0000.000
155A168VAL 0-0.055-0.02519.9710.0120.0120.0000.0000.0000.000
156A169LYS 10.8250.92914.788-0.047-0.0470.0000.0000.0000.000
157A170ALA 00.0310.01120.7740.0030.0030.0000.0000.0000.000
158A171PHE 0-0.025-0.01418.422-0.010-0.0100.0000.0000.0000.000
159A172PRO 00.0340.02824.4340.0040.0040.0000.0000.0000.000
160A173ALA 0-0.009-0.00727.288-0.004-0.0040.0000.0000.0000.000
161A174LYS 10.9420.97129.5420.0220.0220.0000.0000.0000.000
162A175ILE 00.0460.02332.719-0.001-0.0010.0000.0000.0000.000
163A176GLN 0-0.002-0.00635.0970.0000.0000.0000.0000.0000.000
164A177ASN 00.013-0.00936.824-0.001-0.0010.0000.0000.0000.000
165A178ILE 0-0.0100.01237.336-0.001-0.0010.0000.0000.0000.000
166A179PRO 00.005-0.00634.0020.0000.0000.0000.0000.0000.000
167A180CYS 0-0.062-0.00732.4000.0030.0030.0000.0000.0000.000
168A181PHE 00.0580.01727.619-0.004-0.0040.0000.0000.0000.000
169A182VAL 00.0020.00924.1430.0040.0040.0000.0000.0000.000
170A183ILE 00.0130.01224.627-0.002-0.0020.0000.0000.0000.000
171A184MET 00.0000.00419.5500.0040.0040.0000.0000.0000.000
172A185PRO 00.0340.01919.165-0.002-0.0020.0000.0000.0000.000
173A186GLU -1-0.816-0.90014.7600.1750.1750.0000.0000.0000.000
174A187ARG 10.8240.90514.433-0.177-0.1770.0000.0000.0000.000
175A188THR 0-0.0070.00113.536-0.019-0.0190.0000.0000.0000.000
176A189VAL 00.0340.02515.9050.0280.0280.0000.0000.0000.000
177A190TYR 0-0.136-0.12312.6240.0000.0000.0000.0000.0000.000
178A191THR 00.0210.01419.107-0.002-0.0020.0000.0000.0000.000
179A192ASP -1-0.905-0.96322.6860.0410.0410.0000.0000.0000.000
180A193VAL 00.001-0.00225.127-0.008-0.0080.0000.0000.0000.000
181A194ILE 0-0.042-0.01624.2370.0050.0050.0000.0000.0000.000
182A195GLU -1-0.851-0.92926.4210.0480.0480.0000.0000.0000.000
183A196ILE 0-0.037-0.02027.679-0.003-0.0030.0000.0000.0000.000
184A197ILE 0-0.001-0.00129.5600.0020.0020.0000.0000.0000.000
185A198SER 00.000-0.03131.974-0.004-0.0040.0000.0000.0000.000
186A199ASP -1-0.858-0.91934.7760.0060.0060.0000.0000.0000.000
187A200NME 0-0.014-0.00137.5020.0020.0020.0000.0000.0000.000
188A211ACE 0-0.037-0.03040.1720.0000.0000.0000.0000.0000.000
189A212ASP -1-0.838-0.91439.3390.0060.0060.0000.0000.0000.000
190A213ARG 10.7790.86533.928-0.002-0.0020.0000.0000.0000.000
191A214VAL 00.0210.01033.392-0.001-0.0010.0000.0000.0000.000
192A215SER 0-0.016-0.01332.981-0.001-0.0010.0000.0000.0000.000
193A216VAL 0-0.001-0.00629.3550.0010.0010.0000.0000.0000.000
194A217GLU -1-0.888-0.93329.482-0.029-0.0290.0000.0000.0000.000
195A218VAL 0-0.014-0.03124.1170.0040.0040.0000.0000.0000.000
196A219TYR 0-0.068-0.03325.707-0.007-0.0070.0000.0000.0000.000
197A220THR 0-0.034-0.02920.2250.0050.0050.0000.0000.0000.000
198A221NME 0-0.0190.00421.309-0.009-0.0090.0000.0000.0000.000