FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 7M7ZK

Calculation Name: 1JHE-A-Xray540

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 1JHE

Chain ID: A

ChEMBL ID:

UniProt ID: P0A7C2

Base Structure: X-ray

Registration Date: 2025-07-10

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 230
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -1008878.699347
FMO2-HF: Nuclear repulsion 961738.222304
FMO2-HF: Total energy -47140.477043
FMO2-MP2: Total energy -47278.697849


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:75:GLY)


Summations of interaction energy for fragment #1(A:75:GLY)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-3.7631.0212.938-3.918-3.803-0.015
Interaction energy analysis for fragmet #1(A:75:GLY)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.045 / q_NPA : 0.017
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A76LEU0-0.0790.1274.2650.2040.455-0.001-0.093-0.1580.000
4A77PRO00.026-0.0603.8110.2341.665-0.007-0.707-0.7160.003
5A78LEU00.1670.0206.3290.4410.4410.0000.0000.0000.000
6A78LEU0-0.1500.0929.3040.0280.0280.0000.0000.0000.000
7A79VAL0-0.031-0.1329.4930.0610.0610.0000.0000.0000.000
8A79VAL0-0.0920.10710.283-0.012-0.0120.0000.0000.0000.000
9A80GLY00.171-0.03212.3550.1510.1510.0000.0000.0000.000
10A81ARG00.027-0.01115.365-0.059-0.0590.0000.0000.0000.000
11A81ARG10.8731.04518.5620.4060.4060.0000.0000.0000.000
12A82VAL00.066-0.09018.169-0.017-0.0170.0000.0000.0000.000
13A82VAL0-0.0430.12918.149-0.005-0.0050.0000.0000.0000.000
14A83ALA00.119-0.13819.978-0.003-0.0030.0000.0000.0000.000
15A83ALA0-0.0670.11724.7540.0040.0040.0000.0000.0000.000
16A84ALA00.057-0.08623.478-0.004-0.0040.0000.0000.0000.000
17A84ALA0-0.1050.11623.0570.0000.0000.0000.0000.0000.000
18A85GLY0-0.013-0.16024.6020.0260.0260.0000.0000.0000.000
19A86GLU00.078-0.03327.839-0.013-0.0130.0000.0000.0000.000
20A86GLU-1-1.025-0.82630.215-0.189-0.1890.0000.0000.0000.000
21A87PRO0-0.027-0.11326.146-0.012-0.0120.0000.0000.0000.000
22A88LEU00.1180.04625.0690.0230.0230.0000.0000.0000.000
23A88LEU0-0.1350.09021.9310.0000.0000.0000.0000.0000.000
24A89PRO00.032-0.09724.397-0.025-0.0250.0000.0000.0000.000
25A90ALA00.079-0.03620.9480.0130.0130.0000.0000.0000.000
26A90ALA0-0.0580.11419.951-0.010-0.0100.0000.0000.0000.000
27A91GLN00.064-0.07420.389-0.025-0.0250.0000.0000.0000.000
28A91GLN0-0.0820.09420.5440.0040.0040.0000.0000.0000.000
29A92TRP00.095-0.08016.2960.0170.0170.0000.0000.0000.000
30A92TRP0-0.1230.05615.210-0.032-0.0320.0000.0000.0000.000
31A93HIS00.117-0.10814.2960.0280.0280.0000.0000.0000.000
32A93HIS0-0.0670.10713.9480.0210.0210.0000.0000.0000.000
33A94ILE00.001-0.1169.8720.0010.0010.0000.0000.0000.000
34A94ILE0-0.0700.1027.816-0.013-0.0130.0000.0000.0000.000
35A95GLU00.108-0.12010.8630.1140.1140.0000.0000.0000.000
36A95GLU-1-0.990-0.84011.992-0.720-0.7200.0000.0000.0000.000
37A96GLY0-0.049-0.1198.4040.2890.2890.0000.0000.0000.000
38A97HIS00.063-0.0193.916-0.420-0.4280.0000.0050.0040.000
39A97HIS0-0.1220.0802.8401.6032.4680.168-0.424-0.608-0.001
40A98TYR00.049-0.1044.1811.0241.2040.000-0.032-0.1490.000
41A98TYR0-0.0780.0985.9170.2810.2810.0000.0000.0000.000
42A99GLN00.089-0.0903.352-1.803-1.1130.105-0.494-0.301-0.003
43A99GLN0-0.0760.0922.382-4.412-3.0762.676-2.139-1.873-0.014
44A100VAL00.044-0.1223.7880.1270.1550.000-0.024-0.0050.000
45A100VAL0-0.0670.1016.098-0.040-0.0400.0000.0000.0000.000
46A101ASP00.130-0.0894.930-0.570-0.587-0.002-0.0030.0220.000
47A101ASP-1-0.912-0.7987.6500.2950.2950.0000.0000.0000.000
48A102PRO0-0.010-0.1274.674-0.203-0.175-0.001-0.007-0.0190.000
49A103SER00.0740.0017.321-0.087-0.0870.0000.0000.0000.000
50A103SER0-0.0490.07810.3360.0370.0370.0000.0000.0000.000
51A104LEU00.020-0.1169.7620.0520.0520.0000.0000.0000.000
52A104LEU0-0.0990.1009.5810.0100.0100.0000.0000.0000.000
53A105PHE0-0.006-0.09411.4640.0570.0570.0000.0000.0000.000
54A105PHE0-0.0680.0948.975-0.026-0.0260.0000.0000.0000.000
55A106LYS00.157-0.04713.258-0.002-0.0020.0000.0000.0000.000
56A106LYS10.8321.05216.7740.1820.1820.0000.0000.0000.000
57A107PRO0-0.076-0.16815.3810.0340.0340.0000.0000.0000.000
58A108ASN00.1550.06611.182-0.009-0.0090.0000.0000.0000.000
59A108ASN0-0.0840.0639.9710.0620.0620.0000.0000.0000.000
60A109ALA00.097-0.0879.7870.0700.0700.0000.0000.0000.000
61A109ALA0-0.0860.0958.8520.0010.0010.0000.0000.0000.000
62A110ASP00.034-0.1098.250-0.283-0.2830.0000.0000.0000.000
63A110ASP-1-0.912-0.8179.813-1.069-1.0690.0000.0000.0000.000
64A111PHE00.056-0.1127.858-0.711-0.7110.0000.0000.0000.000
65A111PHE0-0.0790.0619.5820.1360.1360.0000.0000.0000.000
66A112LEU00.059-0.0839.0830.3120.3120.0000.0000.0000.000
67A112LEU0-0.0610.0897.4880.0320.0320.0000.0000.0000.000
68A113LEU00.042-0.10210.644-0.076-0.0760.0000.0000.0000.000
69A113LEU0-0.0490.11313.9740.0340.0340.0000.0000.0000.000
70A114ARG00.131-0.08914.1180.0150.0150.0000.0000.0000.000
71A114ARG10.7631.02714.4370.5060.5060.0000.0000.0000.000
72A115VAL00.086-0.14816.1350.0090.0090.0000.0000.0000.000
73A115VAL0-0.0830.13917.7430.0020.0020.0000.0000.0000.000
74A116SER00.041-0.05819.3380.0190.0190.0000.0000.0000.000
75A116SER0-0.0760.06921.6600.0040.0040.0000.0000.0000.000
76A117GLY0-0.002-0.10122.5700.0040.0040.0000.0000.0000.000
77A118MET00.0840.01224.905-0.017-0.0170.0000.0000.0000.000
78A118MET0-0.1170.10725.6720.0000.0000.0000.0000.0000.000
79A119SER00.101-0.07327.3800.0180.0180.0000.0000.0000.000
80A119SER00.0040.07827.164-0.006-0.0060.0000.0000.0000.000
81A120MET00.070-0.06624.9170.0200.0200.0000.0000.0000.000
82A120MET0-0.1250.10324.0760.0010.0010.0000.0000.0000.000
83A121LYS00.188-0.05325.378-0.013-0.0130.0000.0000.0000.000
84A121LYS10.7460.96628.1350.1440.1440.0000.0000.0000.000
85A122ASP00.024-0.08727.3050.0010.0010.0000.0000.0000.000
86A122ASP-1-0.915-0.79730.486-0.140-0.1400.0000.0000.0000.000
87A123ILE00.042-0.13825.7830.0160.0160.0000.0000.0000.000
88A123ILE0-0.1070.08423.776-0.003-0.0030.0000.0000.0000.000
89A124GLY00.000-0.12323.768-0.009-0.0090.0000.0000.0000.000
90A125ILE00.0900.02621.289-0.005-0.0050.0000.0000.0000.000
91A125ILE0-0.1180.08020.257-0.007-0.0070.0000.0000.0000.000
92A126MET00.086-0.12121.6300.0100.0100.0000.0000.0000.000
93A126MET0-0.1170.08022.4220.0070.0070.0000.0000.0000.000
94A127ASP00.138-0.09521.194-0.039-0.0390.0000.0000.0000.000
95A127ASP-1-0.908-0.82023.400-0.267-0.2670.0000.0000.0000.000
96A128GLY0-0.036-0.11419.4060.0200.0200.0000.0000.0000.000
97A129ASP00.104-0.02017.379-0.034-0.0340.0000.0000.0000.000
98A129ASP-1-0.805-0.71917.754-0.291-0.2910.0000.0000.0000.000
99A130LEU00.047-0.08212.8970.0040.0040.0000.0000.0000.000
100A130LEU0-0.1020.09510.733-0.026-0.0260.0000.0000.0000.000
101A131LEU00.112-0.09814.2190.0410.0410.0000.0000.0000.000
102A131LEU0-0.1300.08515.7840.0210.0210.0000.0000.0000.000
103A132ALA00.149-0.07211.550-0.147-0.1470.0000.0000.0000.000
104A132ALA0-0.0880.08911.3420.0080.0080.0000.0000.0000.000
105A133VAL00.016-0.14711.7500.1720.1720.0000.0000.0000.000
106A133VAL0-0.0620.12113.3230.0200.0200.0000.0000.0000.000
107A134HIS00.117-0.06612.041-0.241-0.2410.0000.0000.0000.000
108A134HIS0-0.1140.07713.2320.1280.1280.0000.0000.0000.000
109A135LYS00.076-0.11313.2380.1040.1040.0000.0000.0000.000
110A135LYS10.7351.00513.3880.6920.6920.0000.0000.0000.000
111A136THR00.010-0.08314.9420.0150.0150.0000.0000.0000.000
112A136THR0-0.0340.05217.9480.0180.0180.0000.0000.0000.000
113A137GLN00.157-0.06318.424-0.023-0.0230.0000.0000.0000.000
114A137GLN0-0.1410.07421.817-0.002-0.0020.0000.0000.0000.000
115A138ASP00.008-0.11721.8650.0090.0090.0000.0000.0000.000
116A138ASP-1-1.013-0.83723.678-0.260-0.2600.0000.0000.0000.000
117A139VAL00.122-0.13323.1540.0040.0040.0000.0000.0000.000
118A139VAL0-0.0590.14921.3350.0010.0010.0000.0000.0000.000
119A140ARG00.049-0.06524.0650.0130.0130.0000.0000.0000.000
120A140ARG10.8291.03026.2940.1780.1780.0000.0000.0000.000
121A141ASN00.161-0.08327.008-0.013-0.0130.0000.0000.0000.000
122A141ASN0-0.1350.06231.152-0.008-0.0080.0000.0000.0000.000
123A142GLY00.010-0.10828.9680.0080.0080.0000.0000.0000.000
124A143GLN00.0250.01124.3800.0100.0100.0000.0000.0000.000
125A143GLN0-0.0020.10822.5160.0010.0010.0000.0000.0000.000
126A144VAL00.118-0.09022.7000.0160.0160.0000.0000.0000.000
127A144VAL0-0.0750.11521.6030.0000.0000.0000.0000.0000.000
128A145VAL00.027-0.10221.273-0.032-0.0320.0000.0000.0000.000
129A145VAL0-0.0460.08022.5150.0050.0050.0000.0000.0000.000
130A146VAL00.148-0.05719.3200.0320.0320.0000.0000.0000.000
131A146VAL0-0.0770.11117.553-0.010-0.0100.0000.0000.0000.000
132A147ALA00.064-0.11720.808-0.024-0.0240.0000.0000.0000.000
133A147ALA0-0.0840.09724.8160.0080.0080.0000.0000.0000.000
134A148ARG00.140-0.08723.612-0.008-0.0080.0000.0000.0000.000
135A148ARG10.6890.98319.3140.4740.4740.0000.0000.0000.000
136A149ILE0-0.002-0.12624.7810.0100.0100.0000.0000.0000.000
137A149ILE0-0.0860.09927.8960.0040.0040.0000.0000.0000.000
138A150ASP00.131-0.05428.313-0.012-0.0120.0000.0000.0000.000
139A150ASP-1-0.949-0.84531.274-0.217-0.2170.0000.0000.0000.000
140A151ASP00.002-0.14225.8080.0020.0020.0000.0000.0000.000
141A151ASP-1-1.007-0.84725.836-0.285-0.2850.0000.0000.0000.000
142A152ALA00.152-0.13224.864-0.037-0.0370.0000.0000.0000.000
143A152ALA0-0.0780.12526.8120.0050.0050.0000.0000.0000.000
144A153VAL00.044-0.13421.7480.0190.0190.0000.0000.0000.000
145A153VAL0-0.0900.11620.192-0.007-0.0070.0000.0000.0000.000
146A154THR00.079-0.07723.2680.0070.0070.0000.0000.0000.000
147A154THR0-0.0270.06225.4400.0060.0060.0000.0000.0000.000
148A155VAL00.048-0.07621.770-0.026-0.0260.0000.0000.0000.000
149A155VAL0-0.0950.08420.723-0.004-0.0040.0000.0000.0000.000
150A156ALA00.070-0.12022.9620.0190.0190.0000.0000.0000.000
151A156ALA0-0.0530.10126.6790.0030.0030.0000.0000.0000.000
152A157ARG00.138-0.07825.008-0.024-0.0240.0000.0000.0000.000
153A157ARG10.6750.98026.1900.2060.2060.0000.0000.0000.000
154A158LEU00.119-0.10627.0390.0120.0120.0000.0000.0000.000
155A158LEU0-0.1030.11326.250-0.001-0.0010.0000.0000.0000.000
156A159LYS00.107-0.09728.4300.0080.0080.0000.0000.0000.000
157A159LYS10.7871.06332.4210.1390.1390.0000.0000.0000.000
158A160LYS00.147-0.07831.9430.0060.0060.0000.0000.0000.000
159A160LYS10.8171.05830.7700.1750.1750.0000.0000.0000.000
160A161GLN00.061-0.10833.2300.0020.0020.0000.0000.0000.000
161A161GLN0-0.0690.10936.5570.0000.0000.0000.0000.0000.000
162A162GLY00.039-0.08836.8180.0030.0030.0000.0000.0000.000
163A163ASN00.0860.05435.868-0.011-0.0110.0000.0000.0000.000
164A163ASN0-0.0880.05938.0270.0020.0020.0000.0000.0000.000
165A164LYS00.195-0.06536.887-0.003-0.0030.0000.0000.0000.000
166A164LYS10.7811.00937.1990.1340.1340.0000.0000.0000.000
167A165VAL0-0.027-0.15932.2890.0070.0070.0000.0000.0000.000
168A165VAL0-0.0340.12630.153-0.001-0.0010.0000.0000.0000.000
169A166GLU00.100-0.08133.268-0.002-0.0020.0000.0000.0000.000
170A166GLU-1-0.922-0.82634.008-0.139-0.1390.0000.0000.0000.000
171A167LEU00.043-0.10329.639-0.004-0.0040.0000.0000.0000.000
172A167LEU0-0.0660.11927.170-0.003-0.0030.0000.0000.0000.000
173A168LEU00.024-0.13730.0450.0070.0070.0000.0000.0000.000
174A168LEU0-0.0720.10230.7470.0030.0030.0000.0000.0000.000
175A169PRO00.058-0.07728.918-0.018-0.0180.0000.0000.0000.000
176A170GLU00.1050.01628.6040.0090.0090.0000.0000.0000.000
177A170GLU-1-0.992-0.83327.309-0.181-0.1810.0000.0000.0000.000
178A171ASN00.210-0.06229.8140.0010.0010.0000.0000.0000.000
179A171ASN0-0.1500.05130.4180.0120.0120.0000.0000.0000.000
180A172SER00.025-0.08032.205-0.006-0.0060.0000.0000.0000.000
181A172SER0-0.0110.06936.7770.0030.0030.0000.0000.0000.000
182A173GLU00.098-0.06735.0560.0060.0060.0000.0000.0000.000
183A173GLU-1-1.046-0.86834.386-0.120-0.1200.0000.0000.0000.000
184A174PHE0-0.028-0.11432.8410.0040.0040.0000.0000.0000.000
185A174PHE0-0.0690.08730.306-0.005-0.0050.0000.0000.0000.000
186A175LYS00.082-0.09134.3750.0050.0050.0000.0000.0000.000
187A175LYS10.9021.07536.4390.1240.1240.0000.0000.0000.000
188A176PRO0-0.019-0.10533.372-0.009-0.0090.0000.0000.0000.000
189A177ILE00.0750.00232.3480.0130.0130.0000.0000.0000.000
190A177ILE0-0.0330.13130.055-0.002-0.0020.0000.0000.0000.000
191A178VAL00.027-0.11033.407-0.007-0.0070.0000.0000.0000.000
192A178VAL0-0.0880.07336.7890.0020.0020.0000.0000.0000.000
193A179VAL00.072-0.11233.2670.0050.0050.0000.0000.0000.000
194A179VAL0-0.0370.12631.386-0.002-0.0020.0000.0000.0000.000
195A180ASP00.150-0.06734.750-0.001-0.0010.0000.0000.0000.000
196A180ASP-1-0.872-0.76938.686-0.131-0.1310.0000.0000.0000.000
197A181LEU00.045-0.11034.546-0.002-0.0020.0000.0000.0000.000
198A181LEU0-0.1010.07731.8810.0000.0000.0000.0000.0000.000
199A182ARG00.084-0.08735.387-0.005-0.0050.0000.0000.0000.000
200A182ARG10.7460.95139.1730.1220.1220.0000.0000.0000.000
201A183GLN00.030-0.09237.8970.0040.0040.0000.0000.0000.000
202A183GLN0-0.1250.08037.8760.0030.0030.0000.0000.0000.000
203A184GLN00.064-0.06734.4870.0050.0050.0000.0000.0000.000
204A184GLN0-0.1110.05332.5470.0070.0070.0000.0000.0000.000
205A185SER00.040-0.07530.5710.0050.0050.0000.0000.0000.000
206A185SER0-0.0010.07129.6720.0040.0040.0000.0000.0000.000
207A186PHE00.102-0.05828.780-0.004-0.0040.0000.0000.0000.000
208A186PHE0-0.1020.06827.7350.0010.0010.0000.0000.0000.000
209A187THR0-0.017-0.07624.4480.0130.0130.0000.0000.0000.000
210A187THR0-0.0040.06122.4850.0090.0090.0000.0000.0000.000
211A188ILE00.095-0.08023.176-0.008-0.0080.0000.0000.0000.000
212A188ILE0-0.0810.11021.8420.0060.0060.0000.0000.0000.000
213A189GLU00.053-0.11619.1650.0090.0090.0000.0000.0000.000
214A189GLU-1-0.892-0.79518.094-0.585-0.5850.0000.0000.0000.000
215A190GLY00.057-0.08617.241-0.059-0.0590.0000.0000.0000.000
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217A191LEU0-0.1240.07518.0510.0140.0140.0000.0000.0000.000
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