FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 7NL7K

Calculation Name: 7AMC-A-Xray547

Preferred Name:

Target Type:

Ligand Name: 4-[(2s,4r)-1-acetyl-4-[(4-chlorophenyl)amino]-2-methyl-1,2,3,4-tetrahydroquinolin-6-yl]benzoic acid | glycerol | 1,2-ethanediol

Ligand 3-letter code: 73B | GOL | EDO

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 7AMC

Chain ID: A

ChEMBL ID:

UniProt ID:

Base Structure: X-ray

Registration Date: 2025-10-04

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 115
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -965264.11061
FMO2-HF: Nuclear repulsion 918546.904988
FMO2-HF: Total energy -46717.205622
FMO2-MP2: Total energy -46853.230756


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:15:LEU)


Summations of interaction energy for fragment #1(A:15:LEU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-83.193-79.4945.288-1.27-7.717-0.031
Interaction energy analysis for fragmet #1(A:15:LEU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.865 / q_NPA : 0.937
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A17LEU00.0250.0242.637-2.4030.9281.014-1.265-3.080-0.009
4A18SER00.1240.0564.4040.7010.793-0.001-0.019-0.0730.000
61A75GLU-1-0.895-0.9293.229-37.036-36.1270.081-0.348-0.642-0.002
62A76SER0-0.074-0.0592.658-10.415-8.8011.032-1.077-1.569-0.013
63A77GLY0-0.006-0.0172.463-2.845-2.3142.748-1.196-2.082-0.005
64A78GLN0-0.076-0.0442.8358.0525.2740.4142.635-0.271-0.002
5A19GLU-1-0.755-0.8698.074-27.018-27.0180.0000.0000.0000.000
6A20ALA00.0360.03710.8310.4220.4220.0000.0000.0000.000
7A21LEU00.0670.0265.4840.1560.1560.0000.0000.0000.000
8A22LYS10.7670.8647.55228.33528.3350.0000.0000.0000.000
9A23ALA00.0110.0119.0860.9070.9070.0000.0000.0000.000
10A24CYS0-0.0190.0019.6581.3181.3180.0000.0000.0000.000
11A25SER00.0040.0017.8790.9860.9860.0000.0000.0000.000
12A26ASN0-0.040-0.0409.9320.2180.2180.0000.0000.0000.000
13A27ILE00.0440.03013.2911.0151.0150.0000.0000.0000.000
14A28LEU00.0130.02010.6470.8520.8520.0000.0000.0000.000
15A29LYS10.8990.95910.16526.25126.2510.0000.0000.0000.000
16A30ASP-1-0.810-0.88514.676-13.070-13.0700.0000.0000.0000.000
17A31ILE00.0330.02916.7390.7000.7000.0000.0000.0000.000
18A32SER00.0230.00115.6700.5940.5940.0000.0000.0000.000
19A33SER0-0.057-0.02818.0900.4670.4670.0000.0000.0000.000
20A34GLN00.0310.00219.987-0.003-0.0030.0000.0000.0000.000
21A35ARG10.8370.90521.99313.12913.1290.0000.0000.0000.000
22A36TYR00.0360.02821.7990.6050.6050.0000.0000.0000.000
23A37ARG10.7910.88820.71213.07013.0700.0000.0000.0000.000
24A38ASP-1-0.862-0.94625.408-10.397-10.3970.0000.0000.0000.000
25A39LEU0-0.005-0.00225.3550.1200.1200.0000.0000.0000.000
26A40ASN00.003-0.01421.1620.1260.1260.0000.0000.0000.000
27A41HIS0-0.018-0.00622.343-0.594-0.5940.0000.0000.0000.000
28A42PHE00.001-0.00223.676-0.193-0.1930.0000.0000.0000.000
29A43PHE00.0260.01120.483-0.042-0.0420.0000.0000.0000.000
30A44LEU0-0.045-0.01818.717-0.855-0.8550.0000.0000.0000.000
31A45LYS10.8900.94016.82515.20615.2060.0000.0000.0000.000
32A46PRO0-0.0150.00418.1020.4070.4070.0000.0000.0000.000
33A47VAL00.0200.01420.5840.3060.3060.0000.0000.0000.000
34A48ASP-1-0.853-0.91724.252-10.548-10.5480.0000.0000.0000.000
35A49VAL00.019-0.01626.5950.2430.2430.0000.0000.0000.000
36A50VAL0-0.0200.00429.7050.3560.3560.0000.0000.0000.000
37A51ALA0-0.031-0.02029.1620.2910.2910.0000.0000.0000.000
38A52LEU0-0.038-0.01927.4440.1400.1400.0000.0000.0000.000
39A53GLY0-0.0080.00831.7450.1810.1810.0000.0000.0000.000
40A54LEU0-0.059-0.02429.2520.1650.1650.0000.0000.0000.000
41A55HIS0-0.015-0.00233.3860.1550.1550.0000.0000.0000.000
42A56ASP-1-0.835-0.92034.239-8.173-8.1730.0000.0000.0000.000
43A57TYR0-0.012-0.00525.153-0.338-0.3380.0000.0000.0000.000
44A58TYR0-0.021-0.03624.243-0.363-0.3630.0000.0000.0000.000
45A59ASP-1-0.913-0.93029.089-8.838-8.8380.0000.0000.0000.000
46A60VAL0-0.033-0.00329.524-0.001-0.0010.0000.0000.0000.000
47A61VAL0-0.089-0.05024.335-0.260-0.2600.0000.0000.0000.000
48A62LYS10.9630.97824.14411.03611.0360.0000.0000.0000.000
49A63LYS10.8970.94715.13315.68315.6830.0000.0000.0000.000
50A64ALA00.0620.04421.3170.0560.0560.0000.0000.0000.000
51A65MET0-0.065-0.03514.744-1.032-1.0320.0000.0000.0000.000
52A66ASP-1-0.694-0.80616.630-15.686-15.6860.0000.0000.0000.000
53A67LEU00.0810.02615.155-1.091-1.0910.0000.0000.0000.000
54A68SER0-0.113-0.06713.407-1.360-1.3600.0000.0000.0000.000
55A69THR0-0.004-0.01912.232-1.790-1.7900.0000.0000.0000.000
56A70ILE00.0190.00611.051-1.724-1.7240.0000.0000.0000.000
57A71LYS10.8410.8919.23324.23324.2330.0000.0000.0000.000
58A72THR0-0.020-0.0217.456-3.102-3.1020.0000.0000.0000.000
59A73LYS10.8260.9316.88117.62617.6260.0000.0000.0000.000
60A74LEU0-0.0030.0185.236-2.627-2.6270.0000.0000.0000.000
65A79TYR0-0.088-0.0655.5822.7612.7610.0000.0000.0000.000
66A80HIS00.0150.0115.944-3.929-3.9290.0000.0000.0000.000
67A81THR0-0.023-0.0108.0600.2100.2100.0000.0000.0000.000
68A82LYS10.8290.87910.16815.85715.8570.0000.0000.0000.000
69A83TYR00.002-0.00911.8260.9060.9060.0000.0000.0000.000
70A84ASP-1-0.769-0.87310.341-19.982-19.9820.0000.0000.0000.000
71A85PHE0-0.017-0.0229.4790.1300.1300.0000.0000.0000.000
72A86ALA0-0.008-0.00711.3460.6860.6860.0000.0000.0000.000
73A87ASP-1-0.910-0.94414.961-14.003-14.0030.0000.0000.0000.000
74A88ASP-1-0.752-0.86413.081-17.319-17.3190.0000.0000.0000.000
75A89VAL00.0000.00314.2280.6040.6040.0000.0000.0000.000
76A90ARG10.9170.96316.73814.33114.3310.0000.0000.0000.000
77A91LEU0-0.059-0.00817.8930.6600.6600.0000.0000.0000.000
78A92MET0-0.051-0.00718.4830.3330.3330.0000.0000.0000.000
79A93PHE00.0140.00620.0210.4560.4560.0000.0000.0000.000
80A94ASN00.0350.00023.0290.6600.6600.0000.0000.0000.000
81A95ASN0-0.042-0.03222.0410.7790.7790.0000.0000.0000.000
82A96CYS0-0.0230.01424.9500.4770.4770.0000.0000.0000.000
83A97TYR0-0.006-0.03325.4150.4420.4420.0000.0000.0000.000
84A98LYS10.8620.94225.39610.97510.9750.0000.0000.0000.000
85A99TYR0-0.036-0.01729.3470.1230.1230.0000.0000.0000.000
86A100ASN0-0.032-0.02828.8520.3410.3410.0000.0000.0000.000
87A101GLY00.0530.04532.4870.2870.2870.0000.0000.0000.000
88A102GLU-1-0.832-0.92831.091-9.320-9.3200.0000.0000.0000.000
89A103ASP-1-0.862-0.91933.544-7.745-7.7450.0000.0000.0000.000
90A104SER0-0.031-0.01832.9060.0400.0400.0000.0000.0000.000
91A105GLU-1-0.880-0.95633.351-8.398-8.3980.0000.0000.0000.000
92A106VAL00.0100.00027.739-0.201-0.2010.0000.0000.0000.000
93A107ALA00.0180.01328.476-0.396-0.3960.0000.0000.0000.000
94A108ARG10.8180.91329.6287.8827.8820.0000.0000.0000.000
95A109VAL00.0170.00627.652-0.154-0.1540.0000.0000.0000.000
96A110GLY00.0300.01225.565-0.375-0.3750.0000.0000.0000.000
97A111LYS10.8010.90125.6259.3399.3390.0000.0000.0000.000
98A112GLN0-0.018-0.00627.378-0.015-0.0150.0000.0000.0000.000
99A113LEU0-0.010-0.00621.270-0.240-0.2400.0000.0000.0000.000
100A114GLN00.0230.03522.384-0.309-0.3090.0000.0000.0000.000
101A115ALA00.0070.00823.134-0.273-0.2730.0000.0000.0000.000
102A116ILE0-0.0050.00522.027-0.161-0.1610.0000.0000.0000.000
103A117PHE0-0.018-0.00115.322-0.600-0.6000.0000.0000.0000.000
104A118ASP-1-0.835-0.94419.992-12.821-12.8210.0000.0000.0000.000
105A119GLU-1-0.903-0.93121.893-11.489-11.4890.0000.0000.0000.000
106A120ASN0-0.028-0.04019.274-0.061-0.0610.0000.0000.0000.000
107A121PHE00.008-0.00314.159-0.467-0.4670.0000.0000.0000.000
108A122ALA0-0.016-0.00918.356-0.307-0.3070.0000.0000.0000.000
109A123LYS10.7700.88219.92512.67612.6760.0000.0000.0000.000
110A124VAL0-0.054-0.00913.706-0.529-0.5290.0000.0000.0000.000
111A125PRO00.0020.00614.3220.5390.5390.0000.0000.0000.000
112A126ASP-1-0.834-0.92015.515-16.158-16.1580.0000.0000.0000.000
113A127ASP-1-0.820-0.91611.655-20.711-20.7110.0000.0000.0000.000
114A128GLU-1-0.989-0.98711.351-20.515-20.5150.0000.0000.0000.000
115A129SER-1-0.987-0.99912.422-20.513-20.5130.0000.0000.0000.000