FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 7NR1K

Calculation Name: 7TCZ-A-Xray547

Preferred Name:

Target Type:

Ligand Name: [1-(2-oxopropyl)-4-phenyl-1h-1,2,3-triazol-5-yl]methyl benzylcarbamate

Ligand 3-letter code: GIT

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 7TCZ

Chain ID: A

ChEMBL ID:

UniProt ID:

Base Structure: X-ray

Registration Date: 2025-10-05

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 231
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2804184.933072
FMO2-HF: Nuclear repulsion 2716736.849998
FMO2-HF: Total energy -87448.083074
FMO2-MP2: Total energy -87708.545722


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:6:GLN)


Summations of interaction energy for fragment #1(A:6:GLN)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-12.691-10.932-0.02-0.697-1.04-0.001
Interaction energy analysis for fragmet #1(A:6:GLN)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.873 / q_NPA : 0.927
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A8SER00.0340.0293.8581.0802.756-0.019-0.695-0.961-0.001
4A9GLN00.0050.0005.3334.1604.243-0.001-0.002-0.0790.000
5A10ALA00.0010.0048.2931.9241.9240.0000.0000.0000.000
6A11VAL00.000-0.0078.2071.7361.7360.0000.0000.0000.000
7A12ALA00.0160.02610.6570.9370.9370.0000.0000.0000.000
8A13PRO00.0420.00613.1300.2380.2380.0000.0000.0000.000
9A14VAL0-0.0310.00516.069-0.774-0.7740.0000.0000.0000.000
10A15TYR0-0.0010.00718.6200.4030.4030.0000.0000.0000.000
11A16VAL00.0120.00022.399-0.267-0.2670.0000.0000.0000.000
12A17GLY00.0270.01324.7830.2650.2650.0000.0000.0000.000
13A18GLY00.0480.02228.497-0.179-0.1790.0000.0000.0000.000
14A19PHE0-0.0210.00231.5560.1000.1000.0000.0000.0000.000
15A20LEU00.0110.00432.417-0.074-0.0740.0000.0000.0000.000
16A21ALA0-0.020-0.02035.8320.1760.1760.0000.0000.0000.000
17A22ARG10.8070.89038.8287.7887.7880.0000.0000.0000.000
18A23TYR0-0.045-0.02441.2740.1030.1030.0000.0000.0000.000
19A24ASP-1-0.854-0.91243.286-7.225-7.2250.0000.0000.0000.000
20A25GLN0-0.0110.01341.8100.0620.0620.0000.0000.0000.000
21A26SER00.0060.01244.9860.0620.0620.0000.0000.0000.000
22A27PRO0-0.073-0.04443.556-0.137-0.1370.0000.0000.0000.000
23A28ASP-1-0.919-0.96141.884-7.285-7.2850.0000.0000.0000.000
24A29GLU-1-0.904-0.94744.294-6.492-6.4920.0000.0000.0000.000
25A30ALA00.0200.00146.136-0.071-0.0710.0000.0000.0000.000
26A31GLU-1-0.888-0.96045.544-6.461-6.4610.0000.0000.0000.000
27A32LEU0-0.082-0.03440.512-0.174-0.1740.0000.0000.0000.000
28A33LEU0-0.010-0.00543.504-0.146-0.1460.0000.0000.0000.000
29A34LEU0-0.014-0.00341.031-0.014-0.0140.0000.0000.0000.000
30A35PRO0-0.0060.01044.594-0.122-0.1220.0000.0000.0000.000
31A36ARG10.9190.94945.6746.7226.7220.0000.0000.0000.000
32A37ASP-1-0.857-0.93446.619-6.367-6.3670.0000.0000.0000.000
33A38VAL0-0.003-0.00145.681-0.009-0.0090.0000.0000.0000.000
34A39VAL0-0.026-0.01441.690-0.099-0.0990.0000.0000.0000.000
35A40GLU-1-0.858-0.93144.063-6.977-6.9770.0000.0000.0000.000
36A41HIS0-0.037-0.00646.083-0.050-0.0500.0000.0000.0000.000
37A42TRP0-0.048-0.01342.212-0.049-0.0490.0000.0000.0000.000
38A43LEU0-0.045-0.01941.187-0.268-0.2680.0000.0000.0000.000
39A44HIS0-0.009-0.02143.2880.1460.1460.0000.0000.0000.000
40A45ALA0-0.011-0.00843.431-0.136-0.1360.0000.0000.0000.000
41A46GLN0-0.047-0.02444.294-0.146-0.1460.0000.0000.0000.000
42A47GLY00.0300.04440.411-0.122-0.1220.0000.0000.0000.000
43A48GLN00.0550.01836.4040.2270.2270.0000.0000.0000.000
44A49GLY00.0420.00639.7860.0990.0990.0000.0000.0000.000
45A50GLN0-0.021-0.02832.8140.2060.2060.0000.0000.0000.000
46A51PRO0-0.047-0.01335.126-0.222-0.2220.0000.0000.0000.000
47A52SER0-0.0160.00236.8190.0110.0110.0000.0000.0000.000
48A53LEU00.0240.00830.539-0.021-0.0210.0000.0000.0000.000
49A54SER0-0.027-0.01433.671-0.195-0.1950.0000.0000.0000.000
50A55VAL0-0.023-0.01435.6360.0770.0770.0000.0000.0000.000
51A56ALA00.0070.00630.9800.0400.0400.0000.0000.0000.000
52A57LEU0-0.0110.01331.109-0.235-0.2350.0000.0000.0000.000
53A58PRO00.008-0.00428.453-0.360-0.3600.0000.0000.0000.000
54A59LEU00.0030.00623.9280.1910.1910.0000.0000.0000.000
55A60ASN0-0.014-0.01025.410-0.508-0.5080.0000.0000.0000.000
56A61ILE00.0040.00821.917-0.111-0.1110.0000.0000.0000.000
57A62ASN0-0.028-0.04525.6250.0110.0110.0000.0000.0000.000
58A63HIS00.0490.02828.8700.2750.2750.0000.0000.0000.000
59A64ASP-1-0.781-0.84027.360-10.080-10.0800.0000.0000.0000.000
60A65ASP-1-0.831-0.92028.111-9.301-9.3010.0000.0000.0000.000
61A66THR0-0.071-0.07526.835-0.267-0.2670.0000.0000.0000.000
62A67ALA0-0.022-0.00723.862-0.530-0.5300.0000.0000.0000.000
63A68VAL00.000-0.00724.447-0.132-0.1320.0000.0000.0000.000
64A69VAL0-0.008-0.01820.503-0.482-0.4820.0000.0000.0000.000
65A70GLY00.0100.00520.962-0.804-0.8040.0000.0000.0000.000
66A71HIS00.0000.02023.5220.6330.6330.0000.0000.0000.000
67A72VAL00.0280.00326.617-0.351-0.3510.0000.0000.0000.000
68A73ALA00.0100.00627.5460.2460.2460.0000.0000.0000.000
69A74ALA0-0.018-0.01329.6460.2250.2250.0000.0000.0000.000
70A75MET0-0.0180.00632.557-0.141-0.1410.0000.0000.0000.000
71A76GLN00.0190.01835.426-0.013-0.0130.0000.0000.0000.000
72A77SER0-0.020-0.01438.363-0.099-0.0990.0000.0000.0000.000
73A78VAL00.0170.00838.9150.0100.0100.0000.0000.0000.000
74A79ARG10.8090.87741.9087.6027.6020.0000.0000.0000.000
75A80ASP-1-0.746-0.86741.283-7.357-7.3570.0000.0000.0000.000
76A81GLY00.033-0.00540.4650.0330.0330.0000.0000.0000.000
77A82LEU0-0.0160.02437.4090.0080.0080.0000.0000.0000.000
78A83PHE00.0180.00231.162-0.193-0.1930.0000.0000.0000.000
79A84ALA00.006-0.00332.2020.1300.1300.0000.0000.0000.000
80A85LEU0-0.020-0.01326.596-0.225-0.2250.0000.0000.0000.000
81A86GLY00.0130.01626.7850.2220.2220.0000.0000.0000.000
82A87ALA0-0.031-0.01722.572-0.415-0.4150.0000.0000.0000.000
83A88VAL0-0.0020.00318.1320.2720.2720.0000.0000.0000.000
84A89THR00.000-0.03218.570-0.761-0.7610.0000.0000.0000.000
85A90SER0-0.013-0.02717.773-0.804-0.8040.0000.0000.0000.000
86A91PRO00.0280.00313.530-0.635-0.6350.0000.0000.0000.000
87A92ARG10.8630.94213.23112.94912.9490.0000.0000.0000.000
88A93PHE00.0400.01514.790-0.393-0.3930.0000.0000.0000.000
89A94LEU00.0110.00912.781-0.457-0.4570.0000.0000.0000.000
90A95GLU-1-0.779-0.8868.070-28.992-28.9920.0000.0000.0000.000
91A96ILE0-0.043-0.02210.863-0.662-0.6620.0000.0000.0000.000
92A97VAL00.0020.00913.555-0.025-0.0250.0000.0000.0000.000
93A98ARG10.8820.9345.99030.43730.4370.0000.0000.0000.000
94A99ARG10.8310.9208.95921.41621.4160.0000.0000.0000.000
95A100ALA00.0260.01810.5330.3450.3450.0000.0000.0000.000
96A101SER0-0.074-0.03911.1470.2400.2400.0000.0000.0000.000
97A102GLU-1-0.860-0.9267.995-27.573-27.5730.0000.0000.0000.000
98A103LYS10.8670.93611.47917.63117.6310.0000.0000.0000.000
99A104SER00.0370.02814.7411.2521.2520.0000.0000.0000.000
100A105GLU-1-0.901-0.95517.082-14.928-14.9280.0000.0000.0000.000
101A106LEU0-0.043-0.02319.6550.0870.0870.0000.0000.0000.000
102A107VAL00.0000.00514.7500.0140.0140.0000.0000.0000.000
103A108SER0-0.040-0.02915.454-1.062-1.0620.0000.0000.0000.000
104A109ARG10.9020.95416.46312.75812.7580.0000.0000.0000.000
105A110GLY00.0080.03617.6970.1640.1640.0000.0000.0000.000
106A111PRO0-0.032-0.01518.0400.8310.8310.0000.0000.0000.000
107A112VAL0-0.0040.00121.1490.1590.1590.0000.0000.0000.000
108A113SER0-0.008-0.01722.048-0.366-0.3660.0000.0000.0000.000
109A114PRO00.0170.01221.240-0.464-0.4640.0000.0000.0000.000
110A115LEU0-0.0240.00720.283-0.310-0.3100.0000.0000.0000.000
111A116GLN00.0170.00314.3130.0470.0470.0000.0000.0000.000
112A117PRO00.0140.00213.8240.1990.1990.0000.0000.0000.000
113A118ASP-1-0.783-0.85413.091-22.891-22.8910.0000.0000.0000.000
114A119LYS10.9020.92710.52524.45524.4550.0000.0000.0000.000
115A120VAL00.0050.00911.1761.0201.0200.0000.0000.0000.000
116A121VAL00.0370.02113.9021.2301.2300.0000.0000.0000.000
117A122GLU-1-0.781-0.88916.502-15.981-15.9810.0000.0000.0000.000
118A123PHE0-0.008-0.00815.9390.8550.8550.0000.0000.0000.000
119A124LEU0-0.030-0.01217.4790.7960.7960.0000.0000.0000.000
120A125SER00.012-0.01019.8720.8370.8370.0000.0000.0000.000
121A126GLY0-0.0290.00121.3770.5770.5770.0000.0000.0000.000
122A127SER0-0.055-0.02820.1670.7370.7370.0000.0000.0000.000
123A128TYR0-0.010-0.01719.8430.6050.6050.0000.0000.0000.000
124A129ALA00.0540.04124.644-0.009-0.0090.0000.0000.0000.000
125A130GLY00.0000.00726.7340.2720.2720.0000.0000.0000.000
126A131LEU0-0.0030.00727.826-0.252-0.2520.0000.0000.0000.000
127A132SER0-0.059-0.04230.7160.3830.3830.0000.0000.0000.000
128A133LEU0-0.025-0.00732.688-0.240-0.2400.0000.0000.0000.000
129A134SER-1-0.844-0.90335.394-7.783-7.7830.0000.0000.0000.000
130A155PHE0-0.005-0.02337.1590.0330.0330.0000.0000.0000.000
131A156LYS10.8020.89833.8568.6958.6950.0000.0000.0000.000
132A157HIS-1-0.892-0.94831.104-9.397-9.3970.0000.0000.0000.000
133A158VAL00.0000.00529.7740.1920.1920.0000.0000.0000.000
134A159ALA00.0260.02928.818-0.362-0.3620.0000.0000.0000.000
135A160LEU0-0.019-0.01823.0150.0570.0570.0000.0000.0000.000
136A161CYS0-0.011-0.01026.8990.0060.0060.0000.0000.0000.000
137A162SER00.0490.02527.291-0.129-0.1290.0000.0000.0000.000
138A163VAL00.002-0.01928.261-0.050-0.0500.0000.0000.0000.000
139A164GLY00.0800.04631.4980.0970.0970.0000.0000.0000.000
140A165ARG10.9210.98333.5217.7267.7260.0000.0000.0000.000
141A166ARG10.9420.97136.9267.8577.8570.0000.0000.0000.000
142A167ARG10.7700.86336.0967.9007.9000.0000.0000.0000.000
143A168GLY00.026-0.00536.8090.0680.0680.0000.0000.0000.000
144A169THR0-0.088-0.02733.517-0.222-0.2220.0000.0000.0000.000
145A170LEU0-0.006-0.00129.457-0.261-0.2610.0000.0000.0000.000
146A171ALA0-0.024-0.00126.3670.0030.0030.0000.0000.0000.000
147A172VAL0-0.029-0.01525.965-0.347-0.3470.0000.0000.0000.000
148A173TYR00.010-0.02320.740-0.203-0.2030.0000.0000.0000.000
149A174GLY00.020-0.01120.300-0.029-0.0290.0000.0000.0000.000
150A175ARG10.7320.81712.85020.88720.8870.0000.0000.0000.000
151A176ASP-1-0.812-0.90219.012-13.525-13.5250.0000.0000.0000.000
152A177PRO00.0080.00522.1080.2800.2800.0000.0000.0000.000
153A178GLU-1-0.774-0.84725.447-10.003-10.0030.0000.0000.0000.000
154A179TRP0-0.018-0.02123.1810.2890.2890.0000.0000.0000.000
155A180VAL0-0.0080.00524.0700.2870.2870.0000.0000.0000.000
156A181THR00.015-0.00126.6310.4940.4940.0000.0000.0000.000
157A182GLN0-0.069-0.05128.6990.5850.5850.0000.0000.0000.000
158A183ARG10.7820.88325.85311.70611.7060.0000.0000.0000.000
159A184PHE00.0080.00929.4360.1920.1920.0000.0000.0000.000
160A185PRO0-0.016-0.01033.3470.1140.1140.0000.0000.0000.000
161A186ASP-1-0.872-0.91436.305-8.024-8.0240.0000.0000.0000.000
162A187LEU0-0.066-0.01434.2090.2060.2060.0000.0000.0000.000
163A188THR0-0.026-0.04337.536-0.072-0.0720.0000.0000.0000.000
164A189ALA00.016-0.00537.153-0.190-0.1900.0000.0000.0000.000
165A190ALA00.0530.02737.560-0.164-0.1640.0000.0000.0000.000
166A191ASP-1-0.796-0.87638.097-8.055-8.0550.0000.0000.0000.000
167A192ARG10.8430.92132.3999.2589.2580.0000.0000.0000.000
168A193ASP-1-0.840-0.91434.217-9.119-9.1190.0000.0000.0000.000
169A194GLY00.0050.01236.173-0.066-0.0660.0000.0000.0000.000
170A195LEU0-0.002-0.00732.532-0.120-0.1200.0000.0000.0000.000
171A196ARG10.7590.84530.7219.6449.6440.0000.0000.0000.000
172A197ALA0-0.033-0.01632.210-0.195-0.1950.0000.0000.0000.000
173A198GLN00.0050.00133.693-0.154-0.1540.0000.0000.0000.000
174A199TRP00.0590.01827.069-0.096-0.0960.0000.0000.0000.000
175A200GLN0-0.0240.00028.403-0.262-0.2620.0000.0000.0000.000
176A201ARG10.8320.91829.69810.30110.3010.0000.0000.0000.000
177A202ALA00.0690.04433.6080.1460.1460.0000.0000.0000.000
178A203GLY00.0090.01129.9440.0510.0510.0000.0000.0000.000
179A204SER0-0.065-0.04129.764-0.370-0.3700.0000.0000.0000.000
180A205THR0-0.034-0.02032.0890.1500.1500.0000.0000.0000.000
181A206ALA0-0.022-0.01132.9060.2690.2690.0000.0000.0000.000
182A207VAL0-0.027-0.01428.591-0.301-0.3010.0000.0000.0000.000
183A208ASP-1-0.858-0.92924.921-11.986-11.9860.0000.0000.0000.000
184A209VAL0-0.052-0.01523.842-0.043-0.0430.0000.0000.0000.000
185A210SER0-0.011-0.01525.1320.3150.3150.0000.0000.0000.000
186A211GLY00.004-0.00422.9550.1050.1050.0000.0000.0000.000
187A212ASP-1-0.795-0.86017.635-15.479-15.4790.0000.0000.0000.000
188A213PRO00.0090.00920.9170.3500.3500.0000.0000.0000.000
189A214PHE00.0130.01619.0130.4500.4500.0000.0000.0000.000
190A215ARG10.8050.87420.91710.43910.4390.0000.0000.0000.000
191A216SER00.0150.03323.1550.0180.0180.0000.0000.0000.000
192A217ASP-1-0.838-0.94119.650-12.898-12.8980.0000.0000.0000.000
193A218SER0-0.001-0.00817.057-0.035-0.0350.0000.0000.0000.000
194A219TYR0-0.064-0.02919.123-0.006-0.0060.0000.0000.0000.000
195A220GLY00.0420.03222.5810.3900.3900.0000.0000.0000.000
196A221LEU0-0.016-0.01018.8370.1580.1580.0000.0000.0000.000
197A222LEU0-0.036-0.01421.5050.1440.1440.0000.0000.0000.000
198A223GLY00.0300.03323.2090.3030.3030.0000.0000.0000.000
199A224ASN00.0360.01025.3500.0010.0010.0000.0000.0000.000
200A225SER0-0.102-0.05723.7680.0560.0560.0000.0000.0000.000
201A226VAL00.012-0.01125.8860.1460.1460.0000.0000.0000.000
202A227ASP-1-0.858-0.92928.869-8.918-8.9180.0000.0000.0000.000
203A228ALA0-0.054-0.03928.0530.2280.2280.0000.0000.0000.000
204A229LEU0-0.061-0.02127.7980.0660.0660.0000.0000.0000.000
205A230TYR0-0.0140.00031.2680.2670.2670.0000.0000.0000.000
206A231ILE0-0.0120.01131.9110.2920.2920.0000.0000.0000.000
207A232ARG10.8950.91935.3127.0867.0860.0000.0000.0000.000
208A233GLU-1-0.847-0.91637.624-7.275-7.2750.0000.0000.0000.000
209A234ARG10.8980.96126.68010.47810.4780.0000.0000.0000.000
210A235LEU00.0230.00529.612-0.074-0.0740.0000.0000.0000.000
211A236PRO0-0.030-0.02233.512-0.048-0.0480.0000.0000.0000.000
212A237LYS10.9410.98135.8527.8967.8960.0000.0000.0000.000
213A238LEU00.0590.03529.4520.0190.0190.0000.0000.0000.000
214A239ARG10.9150.96233.3688.8408.8400.0000.0000.0000.000
215A240TYR0-0.037-0.02534.9440.0430.0430.0000.0000.0000.000
216A241ASP-1-0.743-0.86134.125-8.527-8.5270.0000.0000.0000.000
217A242LYS10.7590.85530.8409.9469.9460.0000.0000.0000.000
218A243GLN0-0.037-0.02233.917-0.003-0.0030.0000.0000.0000.000
219A244LEU0-0.0090.00337.1920.0720.0720.0000.0000.0000.000
220A245VAL0-0.018-0.00833.6700.1040.1040.0000.0000.0000.000
221A246GLY00.0220.01835.502-0.140-0.1400.0000.0000.0000.000
222A247VAL0-0.0050.00829.551-0.235-0.2350.0000.0000.0000.000
223A248THR0-0.032-0.04030.6180.2610.2610.0000.0000.0000.000
224A249GLU-1-0.806-0.89326.218-10.718-10.7180.0000.0000.0000.000
225A250ARG10.8010.87626.08010.29510.2950.0000.0000.0000.000
226A251GLU-1-0.822-0.88026.967-11.162-11.1620.0000.0000.0000.000
227A252SER00.0120.01124.913-0.395-0.3950.0000.0000.0000.000
228A253TYR00.000-0.01117.6610.2080.2080.0000.0000.0000.000
229A254VAL0-0.011-0.00722.455-0.264-0.2640.0000.0000.0000.000
230A255LYS10.8110.89120.21514.29714.2970.0000.0000.0000.000
231A256ALA-1-0.834-0.88325.437-9.977-9.9770.0000.0000.0000.000