FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 86J9Y

Calculation Name: 2OZX-A-Other549

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 2OZX

Chain ID: A

ChEMBL ID:

UniProt ID: Q9NRX4

Base Structure: SolutionNMR

Registration Date: 2025-10-12

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement ac.sh, 23 2024 Oct
Water No
Procedure Manual calculation
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 125
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -1024079.746439
FMO2-HF: Nuclear repulsion 974804.354494
FMO2-HF: Total energy -49275.391945
FMO2-MP2: Total energy -49416.81064


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:MET)


Summations of interaction energy for fragment #1(A:1:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-75.841-68.5834.315-4.349-7.225-0.039
Interaction energy analysis for fragmet #1(A:1:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.835 / q_NPA : 0.928
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3VAL00.0110.0052.527-5.373-2.0441.501-2.076-2.754-0.018
4A4ALA00.0440.0304.7520.3890.519-0.001-0.005-0.1230.000
32A32ARG10.9150.9332.20437.64738.5451.277-0.500-1.6750.001
33A33SER0-0.008-0.0063.772-0.172-0.0090.0040.019-0.1860.000
66A66LYS10.8610.9374.24721.57621.755-0.001-0.032-0.1460.000
67A67GLN0-0.067-0.0402.478-14.852-13.1751.404-1.305-1.777-0.018
68A68GLY0-0.084-0.0273.161-6.634-5.7920.132-0.443-0.531-0.004
69A69CYS0-0.077-0.0394.6893.3503.390-0.001-0.007-0.0330.000
5A5ASP-1-0.804-0.9206.302-19.281-19.2810.0000.0000.0000.000
6A6LEU00.0310.0159.859-0.094-0.0940.0000.0000.0000.000
7A7ALA0-0.051-0.03112.3810.9590.9590.0000.0000.0000.000
8A8LEU0-0.064-0.0298.3130.2890.2890.0000.0000.0000.000
9A9ILE00.0230.0278.6410.1020.1020.0000.0000.0000.000
10A10PRO00.0160.01911.9721.1741.1740.0000.0000.0000.000
11A11ASP-1-0.758-0.86915.500-13.557-13.5570.0000.0000.0000.000
12A12VAL0-0.015-0.02018.1970.2990.2990.0000.0000.0000.000
13A13ASP-1-0.872-0.92817.092-15.069-15.0690.0000.0000.0000.000
14A14ILE0-0.031-0.01719.5600.0450.0450.0000.0000.0000.000
15A15ASP-1-0.905-0.94422.376-11.057-11.0570.0000.0000.0000.000
16A16SER0-0.065-0.04924.6220.2180.2180.0000.0000.0000.000
17A17ASP-1-0.900-0.96128.216-8.975-8.9750.0000.0000.0000.000
18A18GLY00.0810.04731.5990.2330.2330.0000.0000.0000.000
19A19VAL0-0.051-0.01632.199-0.161-0.1610.0000.0000.0000.000
20A20PHE0-0.0010.00725.390-0.034-0.0340.0000.0000.0000.000
21A21LYS10.8690.92726.7089.6669.6660.0000.0000.0000.000
22A22TYR0-0.021-0.03723.886-0.403-0.4030.0000.0000.0000.000
23A23VAL0-0.012-0.01720.3900.3610.3610.0000.0000.0000.000
24A24LEU0-0.023-0.00321.720-0.295-0.2950.0000.0000.0000.000
25A25ILE0-0.014-0.01216.0330.1790.1790.0000.0000.0000.000
26A26ARG10.8900.93817.57912.37512.3750.0000.0000.0000.000
27A27VAL00.000-0.00211.488-0.360-0.3600.0000.0000.0000.000
28A28HIS00.0600.03813.3190.5520.5520.0000.0000.0000.000
29A29SER0-0.019-0.04510.040-1.526-1.5260.0000.0000.0000.000
30A30ALA00.0320.0108.4861.2921.2920.0000.0000.0000.000
31A31PRO00.0430.0345.515-3.317-3.3170.0000.0000.0000.000
34A34GLY0-0.010-0.0046.8912.0992.0990.0000.0000.0000.000
35A35ALA0-0.063-0.0107.9151.1521.1520.0000.0000.0000.000
36A36PRO0-0.021-0.0089.5770.6930.6930.0000.0000.0000.000
37A37ALA0-0.016-0.01910.8930.9160.9160.0000.0000.0000.000
38A38ALA00.0140.00311.641-0.986-0.9860.0000.0000.0000.000
39A39GLU-1-0.930-0.93514.048-14.783-14.7830.0000.0000.0000.000
40A40SER00.018-0.02014.308-1.202-1.2020.0000.0000.0000.000
41A41LYS10.7860.90614.43616.79816.7980.0000.0000.0000.000
42A42GLU-1-0.810-0.89117.185-12.861-12.8610.0000.0000.0000.000
43A43ILE0-0.049-0.00914.256-0.155-0.1550.0000.0000.0000.000
44A44VAL0-0.0140.00618.4860.3200.3200.0000.0000.0000.000
45A45ARG10.8440.92314.91714.74514.7450.0000.0000.0000.000
46A46GLY00.0550.00620.1090.4620.4620.0000.0000.0000.000
47A47TYR0-0.014-0.01917.4540.0050.0050.0000.0000.0000.000
48A48LYS10.9010.95923.6419.8919.8910.0000.0000.0000.000
49A49TRP0-0.0070.00318.8510.2570.2570.0000.0000.0000.000
50A50ALA0-0.0090.02023.0160.0170.0170.0000.0000.0000.000
51A51GLU-1-0.920-0.94924.890-9.532-9.5320.0000.0000.0000.000
52A52TYR0-0.004-0.01626.1180.3730.3730.0000.0000.0000.000
53A53HIS0-0.017-0.02524.426-0.370-0.3700.0000.0000.0000.000
54A54ALA00.0130.01822.482-0.375-0.3750.0000.0000.0000.000
55A55ASP-1-0.868-0.93120.766-13.234-13.2340.0000.0000.0000.000
56A56ILE0-0.015-0.01619.260-0.622-0.6220.0000.0000.0000.000
57A57TYR00.0530.01517.572-0.748-0.7480.0000.0000.0000.000
58A58ASP-1-0.909-0.92816.395-16.149-16.1490.0000.0000.0000.000
59A59LYS10.9530.97014.87814.22814.2280.0000.0000.0000.000
60A60VAL0-0.012-0.00213.294-1.168-1.1680.0000.0000.0000.000
61A61SER00.044-0.01011.862-1.232-1.2320.0000.0000.0000.000
62A62GLY0-0.0140.00910.744-1.400-1.4000.0000.0000.0000.000
63A63ASP-1-0.921-0.9518.951-26.415-26.4150.0000.0000.0000.000
64A64MET00.0280.0027.161-2.442-2.4420.0000.0000.0000.000
65A65GLN00.006-0.0096.463-2.811-2.8110.0000.0000.0000.000
70A70ASP-1-0.846-0.9198.216-18.769-18.7690.0000.0000.0000.000
71A71CYS0-0.075-0.03311.2910.1660.1660.0000.0000.0000.000
72A72GLU-1-0.890-0.93114.611-12.280-12.2800.0000.0000.0000.000
73A73CYS0-0.068-0.02618.4250.0880.0880.0000.0000.0000.000
74A74LEU0-0.008-0.00721.0110.4120.4120.0000.0000.0000.000
75A75GLY00.0260.01823.7450.4940.4940.0000.0000.0000.000
76A76GLY00.026-0.00824.554-0.482-0.4820.0000.0000.0000.000
77A77GLY0-0.0110.00726.5810.3960.3960.0000.0000.0000.000
78A78ARG10.7980.89028.5997.9887.9880.0000.0000.0000.000
79A79ILE00.0080.01725.9090.1560.1560.0000.0000.0000.000
80A80SER00.003-0.00430.0280.0660.0660.0000.0000.0000.000
81A81HIS00.0370.01430.818-0.046-0.0460.0000.0000.0000.000
82A82GLN00.0460.02832.764-0.055-0.0550.0000.0000.0000.000
83A83SER0-0.052-0.03635.4120.1340.1340.0000.0000.0000.000
84A84GLN0-0.047-0.01037.7240.2170.2170.0000.0000.0000.000
85A85ASP-1-0.842-0.94340.630-6.696-6.6960.0000.0000.0000.000
86A86LYS10.8290.90939.9916.6466.6460.0000.0000.0000.000
87A87LYS10.9270.98435.9177.6667.6660.0000.0000.0000.000
88A88ILE00.0280.02529.7550.0800.0800.0000.0000.0000.000
89A89HIS00.0140.02733.5780.0400.0400.0000.0000.0000.000
90A90VAL0-0.002-0.00529.413-0.140-0.1400.0000.0000.0000.000
91A91TYR00.022-0.00432.2950.2830.2830.0000.0000.0000.000
92A92GLY00.0570.04932.542-0.216-0.2160.0000.0000.0000.000
93A93TYR0-0.011-0.01631.054-0.134-0.1340.0000.0000.0000.000
94A94SER00.0270.00427.228-0.094-0.0940.0000.0000.0000.000
95A95MET0-0.007-0.01929.419-0.021-0.0210.0000.0000.0000.000
96A96ALA0-0.0170.00326.3960.0860.0860.0000.0000.0000.000
97A97TYR0-0.025-0.02422.531-0.253-0.2530.0000.0000.0000.000
98A98GLY00.0520.04427.7670.1690.1690.0000.0000.0000.000
99A99PRO00.008-0.02829.194-0.233-0.2330.0000.0000.0000.000
100A100ALA0-0.0090.02926.317-0.147-0.1470.0000.0000.0000.000
101A101GLN00.0240.01027.1220.4560.4560.0000.0000.0000.000
102A102HIS00.0500.03128.348-0.398-0.3980.0000.0000.0000.000
103A103ALA00.0040.02629.769-0.050-0.0500.0000.0000.0000.000
104A104ILE00.0380.02224.670-0.069-0.0690.0000.0000.0000.000
105A105SER00.007-0.02825.148-0.341-0.3410.0000.0000.0000.000
106A106THR0-0.022-0.03126.213-0.100-0.1000.0000.0000.0000.000
107A107GLU-1-0.852-0.92028.705-8.941-8.9410.0000.0000.0000.000
108A108LYS10.8280.89620.13912.61812.6180.0000.0000.0000.000
109A109ILE0-0.031-0.02724.860-0.228-0.2280.0000.0000.0000.000
110A110LYS10.8220.92226.2988.5478.5470.0000.0000.0000.000
111A111ALA0-0.0080.01225.6980.1030.1030.0000.0000.0000.000
112A112LYS10.8800.95419.98213.15813.1580.0000.0000.0000.000
113A113TYR0-0.020-0.02024.577-0.311-0.3110.0000.0000.0000.000
114A114PRO0-0.0090.00027.0910.2090.2090.0000.0000.0000.000
115A115ASP-1-0.910-0.95930.577-8.318-8.3180.0000.0000.0000.000
116A116TYR0-0.031-0.01832.736-0.013-0.0130.0000.0000.0000.000
117A117GLU-1-0.863-0.94435.151-7.880-7.8800.0000.0000.0000.000
118A118VAL0-0.039-0.01129.999-0.108-0.1080.0000.0000.0000.000
119A119THR0-0.035-0.02433.2910.1040.1040.0000.0000.0000.000
120A120TRP00.0230.00032.607-0.153-0.1530.0000.0000.0000.000
121A121ALA0-0.014-0.00634.6690.2350.2350.0000.0000.0000.000
122A122ASN0-0.051-0.04535.733-0.336-0.3360.0000.0000.0000.000
123A123ASP-1-0.940-0.95637.319-6.773-6.7730.0000.0000.0000.000
124A124GLY00.0400.01939.0270.1540.1540.0000.0000.0000.000
125A125TYR-1-0.911-0.92132.905-7.944-7.9440.0000.0000.0000.000