FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 878GY

Calculation Name: 2MZV-A-Other547

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 2MZV

Chain ID: A

ChEMBL ID:

UniProt ID: Q9AUC9

Base Structure: SolutionNMR

Registration Date: 2025-10-04

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 199
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -1980827.406305
FMO2-HF: Nuclear repulsion 1903303.376544
FMO2-HF: Total energy -77524.029761
FMO2-MP2: Total energy -77753.556887


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:MET)


Summations of interaction energy for fragment #1(A:1:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-126.022-121.32713.523-10.185-8.03-0.093
Interaction energy analysis for fragmet #1(A:1:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.763 / q_NPA : 0.873
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3THR0-0.018-0.0163.8105.3366.831-0.027-0.635-0.833-0.002
79A79ASP-1-0.788-0.8792.104-87.012-85.2167.031-4.798-4.028-0.046
80A80PHE0-0.0070.0032.158-29.908-28.5546.520-4.746-3.127-0.045
81A81LYS10.9160.9575.04242.28542.335-0.001-0.006-0.0420.000
4A4LEU0-0.032-0.0056.4800.7020.7020.0000.0000.0000.000
5A5GLY00.0250.01010.307-0.215-0.2150.0000.0000.0000.000
6A6GLY00.0200.01513.5760.6440.6440.0000.0000.0000.000
7A7VAL0-0.093-0.03217.257-0.169-0.1690.0000.0000.0000.000
8A8HIS00.0210.02120.0900.6090.6090.0000.0000.0000.000
9A9ASP-1-0.905-0.94320.993-13.311-13.3110.0000.0000.0000.000
10A10SER00.017-0.01220.290-0.406-0.4060.0000.0000.0000.000
11A11ASN0-0.017-0.00522.4310.0900.0900.0000.0000.0000.000
12A12SER0-0.014-0.01319.766-0.133-0.1330.0000.0000.0000.000
13A13ASN00.0040.01219.3570.1600.1600.0000.0000.0000.000
14A14PRO00.0480.03414.3880.0610.0610.0000.0000.0000.000
15A15ASP-1-0.826-0.91213.884-19.068-19.0680.0000.0000.0000.000
16A16THR0-0.037-0.05014.892-0.751-0.7510.0000.0000.0000.000
17A17HIS00.0350.01416.3410.3030.3030.0000.0000.0000.000
18A18SER0-0.028-0.01714.1970.2760.2760.0000.0000.0000.000
19A19LEU0-0.039-0.02210.058-0.488-0.4880.0000.0000.0000.000
20A20ALA00.0360.02213.8620.0660.0660.0000.0000.0000.000
21A21ARG10.9530.96817.05614.94014.9400.0000.0000.0000.000
22A22PHE00.009-0.00511.098-0.050-0.0500.0000.0000.0000.000
23A23ALA0-0.012-0.00215.1670.1950.1950.0000.0000.0000.000
24A24VAL0-0.003-0.00216.6200.4170.4170.0000.0000.0000.000
25A25ASP-1-0.925-0.95317.533-15.784-15.7840.0000.0000.0000.000
26A26GLN0-0.020-0.02215.2310.7520.7520.0000.0000.0000.000
27A27HIS00.0400.00017.9380.1940.1940.0000.0000.0000.000
28A28ASN0-0.047-0.02721.1850.9190.9190.0000.0000.0000.000
29A29THR0-0.0130.00519.6240.7230.7230.0000.0000.0000.000
30A30LYS10.7460.87920.31914.21814.2180.0000.0000.0000.000
31A31GLU-1-0.886-0.93723.690-12.142-12.1420.0000.0000.0000.000
32A32ASN0-0.032-0.01824.8670.4630.4630.0000.0000.0000.000
33A33GLY00.0430.00426.662-0.075-0.0750.0000.0000.0000.000
34A34LEU0-0.070-0.01828.0310.3320.3320.0000.0000.0000.000
35A35LEU00.0040.00325.1890.2000.2000.0000.0000.0000.000
36A36GLU-1-0.921-0.95025.621-11.305-11.3050.0000.0000.0000.000
37A37LEU0-0.064-0.03720.5120.1540.1540.0000.0000.0000.000
38A38VAL0-0.035-0.00424.8790.1140.1140.0000.0000.0000.000
39A39ARG10.9350.95625.66111.06911.0690.0000.0000.0000.000
40A40VAL00.0030.00020.8390.0020.0020.0000.0000.0000.000
41A41VAL00.0090.03523.8220.3300.3300.0000.0000.0000.000
42A42GLU-1-0.868-0.92923.322-11.873-11.8730.0000.0000.0000.000
43A43ALA0-0.054-0.03317.958-0.583-0.5830.0000.0000.0000.000
44A44ARG10.8460.92019.23513.62513.6250.0000.0000.0000.000
45A45GLU-1-0.866-0.93114.194-22.754-22.7540.0000.0000.0000.000
46A46GLN00.007-0.02916.3711.8301.8300.0000.0000.0000.000
47A47VAL00.0100.02115.019-1.377-1.3770.0000.0000.0000.000
48A48VAL00.009-0.00815.2571.2141.2140.0000.0000.0000.000
49A49ALA0-0.042-0.02014.924-0.949-0.9490.0000.0000.0000.000
50A50GLY0-0.007-0.00411.833-0.964-0.9640.0000.0000.0000.000
51A51THR0-0.042-0.0189.942-0.339-0.3390.0000.0000.0000.000
52A52LEU0-0.037-0.01112.158-0.388-0.3880.0000.0000.0000.000
53A53HIS00.0150.00312.1991.0231.0230.0000.0000.0000.000
54A54HIS0-0.072-0.04814.3920.0350.0350.0000.0000.0000.000
55A55LEU00.0150.02115.7200.3630.3630.0000.0000.0000.000
56A56VAL00.0000.00719.1160.3500.3500.0000.0000.0000.000
57A57LEU0-0.018-0.00821.123-0.194-0.1940.0000.0000.0000.000
58A58GLU-1-0.882-0.95024.013-10.970-10.9700.0000.0000.0000.000
59A59VAL0-0.001-0.01124.962-0.282-0.2820.0000.0000.0000.000
60A60LEU0-0.032-0.02027.6610.4990.4990.0000.0000.0000.000
61A61ASP-1-0.884-0.93429.899-10.429-10.4290.0000.0000.0000.000
62A62ALA00.0300.01031.4540.3680.3680.0000.0000.0000.000
63A63GLY00.0190.01633.7930.2970.2970.0000.0000.0000.000
64A64LYS10.8860.92934.6888.8058.8050.0000.0000.0000.000
65A65LYS10.9590.98932.3628.7378.7370.0000.0000.0000.000
66A66LYS10.8340.91330.54110.21610.2160.0000.0000.0000.000
67A67LEU00.0430.04627.888-0.260-0.2600.0000.0000.0000.000
68A68TYR0-0.005-0.01019.9510.2570.2570.0000.0000.0000.000
69A69GLU-1-0.808-0.91022.413-13.163-13.1630.0000.0000.0000.000
70A70ALA0-0.008-0.01517.7050.0900.0900.0000.0000.0000.000
71A71LYS10.9390.98517.13913.90713.9070.0000.0000.0000.000
72A72ILE0-0.013-0.01210.875-0.398-0.3980.0000.0000.0000.000
73A73TRP00.0740.03612.3840.1750.1750.0000.0000.0000.000
74A74VAL0-0.024-0.0186.273-2.544-2.5440.0000.0000.0000.000
75A75LYS10.9630.9817.21030.79630.7960.0000.0000.0000.000
76A76PRO00.0640.0276.175-4.476-4.4760.0000.0000.0000.000
77A77TRP0-0.015-0.0016.054-3.348-3.3480.0000.0000.0000.000
78A78MET0-0.015-0.0266.465-0.304-0.3040.0000.0000.0000.000
82A82GLN0-0.014-0.0116.873-0.826-0.8260.0000.0000.0000.000
83A83LEU00.0080.01210.3790.5450.5450.0000.0000.0000.000
84A84GLN0-0.033-0.00113.5410.9850.9850.0000.0000.0000.000
85A85GLU-1-0.734-0.86416.601-12.935-12.9350.0000.0000.0000.000
86A86PHE0-0.021-0.01719.270-0.515-0.5150.0000.0000.0000.000
87A87LYS10.8280.92621.65312.96912.9690.0000.0000.0000.000
88A88HIS00.0290.02325.257-0.048-0.0480.0000.0000.0000.000
89A89VAL00.0270.01126.9170.2300.2300.0000.0000.0000.000
90A90ARG10.9140.93129.4949.2279.2270.0000.0000.0000.000
91A91ASP-1-0.906-0.95130.716-9.959-9.9590.0000.0000.0000.000
92A92VAL0-0.017-0.00731.1060.3730.3730.0000.0000.0000.000
93A93PRO00.0480.02928.453-0.311-0.3110.0000.0000.0000.000
94A94SER00.0020.00327.370-0.435-0.4350.0000.0000.0000.000
95A95PHE00.0390.01124.7230.1850.1850.0000.0000.0000.000
96A96THR0-0.063-0.05129.4650.3670.3670.0000.0000.0000.000
97A97SER0-0.042-0.00932.6290.3160.3160.0000.0000.0000.000
98A98SER0-0.0130.00033.2630.3710.3710.0000.0000.0000.000
99A99ASP-1-0.901-0.94231.872-10.290-10.2900.0000.0000.0000.000
100A100LEU0-0.044-0.02928.2440.0850.0850.0000.0000.0000.000
101A101GLY00.0160.01127.203-0.080-0.0800.0000.0000.0000.000
102A102ALA0-0.056-0.03823.380-0.428-0.4280.0000.0000.0000.000
103A103LYS10.8370.90324.79811.01711.0170.0000.0000.0000.000
104A104THR00.0330.02223.332-0.516-0.5160.0000.0000.0000.000
105A105ASP-1-0.897-0.93625.288-10.488-10.4880.0000.0000.0000.000
106A106ASP-1-0.843-0.90023.532-12.962-12.9620.0000.0000.0000.000
107A107GLN0-0.039-0.02126.782-0.212-0.2120.0000.0000.0000.000
108A108VAL00.002-0.00522.295-0.505-0.5050.0000.0000.0000.000
109A109SER0-0.010-0.01124.1770.4110.4110.0000.0000.0000.000
110A110GLY00.0350.01122.403-0.601-0.6010.0000.0000.0000.000
111A111TRP0-0.029-0.01423.322-0.231-0.2310.0000.0000.0000.000
112A112ARG10.9190.96818.91714.20714.2070.0000.0000.0000.000
113A113PRO00.0290.01219.0150.5010.5010.0000.0000.0000.000
114A114VAL0-0.042-0.02221.159-0.302-0.3020.0000.0000.0000.000
115A115PRO00.0300.02819.539-0.097-0.0970.0000.0000.0000.000
116A116VAL00.015-0.00121.0860.6630.6630.0000.0000.0000.000
117A117HIS0-0.041-0.03023.4160.0390.0390.0000.0000.0000.000
118A118ASP-1-0.841-0.92022.490-13.712-13.7120.0000.0000.0000.000
119A119PRO00.0100.01524.9500.4790.4790.0000.0000.0000.000
120A120VAL00.0470.01125.3450.3830.3830.0000.0000.0000.000
121A121VAL0-0.019-0.01025.1510.2910.2910.0000.0000.0000.000
122A122GLN00.005-0.01128.1920.2920.2920.0000.0000.0000.000
123A123ASP-1-0.871-0.92530.585-9.194-9.1940.0000.0000.0000.000
124A124ALA00.0050.00630.7680.3190.3190.0000.0000.0000.000
125A125ALA00.0060.00031.4050.2950.2950.0000.0000.0000.000
126A126HIS10.8490.90133.2949.0299.0290.0000.0000.0000.000
127A127HIS00.0240.01535.9140.4220.4220.0000.0000.0000.000
128A128ALA00.0480.04335.4960.2790.2790.0000.0000.0000.000
129A129ILE0-0.052-0.00835.4970.2200.2200.0000.0000.0000.000
130A130LYS10.9010.95038.9667.7447.7440.0000.0000.0000.000
131A131THR0-0.029-0.03640.4990.2410.2410.0000.0000.0000.000
132A132ILE0-0.015-0.01837.7850.1580.1580.0000.0000.0000.000
133A133GLN0-0.046-0.01442.2120.0590.0590.0000.0000.0000.000
134A134GLU-1-0.829-0.90944.701-6.925-6.9250.0000.0000.0000.000
135A135ARG10.8640.93843.4917.0987.0980.0000.0000.0000.000
136A136SER0-0.067-0.02846.6590.1360.1360.0000.0000.0000.000
137A137ASN0-0.022-0.02449.3920.2290.2290.0000.0000.0000.000
138A138SER00.0190.01450.073-0.098-0.0980.0000.0000.0000.000
139A139LEU0-0.044-0.01047.7530.0950.0950.0000.0000.0000.000
140A140PHE00.0480.01345.132-0.135-0.1350.0000.0000.0000.000
141A141PRO0-0.064-0.01045.0810.0440.0440.0000.0000.0000.000
142A142TYR00.016-0.01140.8910.1180.1180.0000.0000.0000.000
143A143GLU-1-0.848-0.91938.804-7.925-7.9250.0000.0000.0000.000
144A144LEU0-0.043-0.02331.5220.0020.0020.0000.0000.0000.000
145A145SER0-0.042-0.00635.4880.0950.0950.0000.0000.0000.000
146A146GLU-1-0.817-0.91530.994-9.477-9.4770.0000.0000.0000.000
147A147VAL00.0180.00427.1110.1640.1640.0000.0000.0000.000
148A148VAL0-0.064-0.02826.728-0.193-0.1930.0000.0000.0000.000
149A149HIS0-0.011-0.01524.009-0.859-0.8590.0000.0000.0000.000
150A150ALA00.0410.01524.3330.5820.5820.0000.0000.0000.000
151A151ASN0-0.019-0.01623.783-0.663-0.6630.0000.0000.0000.000
152A152ALA00.0250.02224.4230.5500.5500.0000.0000.0000.000
153A153GLU-1-0.853-0.92525.170-11.084-11.0840.0000.0000.0000.000
154A154VAL0-0.0270.00226.2680.2860.2860.0000.0000.0000.000
155A155VAL0-0.016-0.00828.7780.0380.0380.0000.0000.0000.000
156A156ASP-1-0.903-0.96132.279-9.056-9.0560.0000.0000.0000.000
157A157THR0-0.070-0.03234.5450.0850.0850.0000.0000.0000.000
158A158SER00.0230.00033.949-0.038-0.0380.0000.0000.0000.000
159A159ALA0-0.0070.00129.299-0.209-0.2090.0000.0000.0000.000
160A160LYS10.8430.90630.41210.31910.3190.0000.0000.0000.000
161A161PHE00.001-0.01726.398-0.467-0.4670.0000.0000.0000.000
162A162ASP-1-0.882-0.91629.048-9.646-9.6460.0000.0000.0000.000
163A163MET0-0.076-0.04328.348-0.604-0.6040.0000.0000.0000.000
164A164LEU0-0.0140.00629.2230.3300.3300.0000.0000.0000.000
165A165LEU0-0.024-0.00529.713-0.370-0.3700.0000.0000.0000.000
166A166LYS10.8380.92132.1909.3819.3810.0000.0000.0000.000
167A167VAL00.0010.00034.910-0.016-0.0160.0000.0000.0000.000
168A168LYS10.9140.96136.2378.6118.6110.0000.0000.0000.000
169A169ARG10.9760.96840.9206.6836.6830.0000.0000.0000.000
170A170GLY0-0.0030.00044.7640.0390.0390.0000.0000.0000.000
171A171GLY00.0190.01343.8290.0850.0850.0000.0000.0000.000
172A172LYS10.9060.98741.7987.2557.2550.0000.0000.0000.000
173A173GLU-1-0.952-1.01037.238-8.496-8.4960.0000.0000.0000.000
174A174GLU-1-0.853-0.92638.939-7.582-7.5820.0000.0000.0000.000
175A175LYS10.9270.97030.5569.7849.7840.0000.0000.0000.000
176A176TYR0-0.018-0.00835.2930.2160.2160.0000.0000.0000.000
177A177LYS10.9440.98031.7619.3309.3300.0000.0000.0000.000
178A178VAL00.009-0.00932.6710.3180.3180.0000.0000.0000.000
179A179GLU-1-0.833-0.90633.287-9.067-9.0670.0000.0000.0000.000
180A180VAL0-0.020-0.01933.2700.3540.3540.0000.0000.0000.000
181A181HIS00.003-0.00233.714-0.181-0.1810.0000.0000.0000.000
182A182LYS10.9430.97530.65110.06710.0670.0000.0000.0000.000
183A183SER00.0460.04733.841-0.008-0.0080.0000.0000.0000.000
184A184THR00.008-0.00834.173-0.294-0.2940.0000.0000.0000.000
185A185GLU-1-0.891-0.94436.409-8.042-8.0420.0000.0000.0000.000
186A186GLU-1-0.925-0.94939.584-7.398-7.3980.0000.0000.0000.000
187A187GLY0-0.044-0.02241.3150.0110.0110.0000.0000.0000.000
188A188GLY0-0.036-0.01937.681-0.028-0.0280.0000.0000.0000.000
189A189PHE0-0.024-0.02131.884-0.294-0.2940.0000.0000.0000.000
190A190ASN00.010-0.01137.4630.0930.0930.0000.0000.0000.000
191A191LEU0-0.034-0.01437.765-0.152-0.1520.0000.0000.0000.000
192A192LYS10.8720.95637.3928.2978.2970.0000.0000.0000.000
193A193LYS10.8990.94636.8668.7528.7520.0000.0000.0000.000
194A194VAL0-0.019-0.00638.411-0.227-0.2270.0000.0000.0000.000
195A195ASP-1-0.859-0.93037.588-7.935-7.9350.0000.0000.0000.000
196A196LEU0-0.048-0.03938.412-0.114-0.1140.0000.0000.0000.000
197A197ASP-1-0.903-0.96733.557-9.501-9.5010.0000.0000.0000.000
198A198HIS0-0.037-0.02836.900-0.205-0.2050.0000.0000.0000.000
199A199SER-1-0.927-0.93537.566-7.964-7.9640.0000.0000.0000.000