FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 897LY

Calculation Name: 1ZTP-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1ZTP

Chain ID: A

ChEMBL ID:

UniProt ID: Q9H3H3

Base Structure: X-ray

Registration Date: 2023-09-23

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 234
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2665082.38192
FMO2-HF: Nuclear repulsion 2575694.89063
FMO2-HF: Total energy -89387.49129
FMO2-MP2: Total energy -89650.0951


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:17:GLU)


Summations of interaction energy for fragment #1(A:17:GLU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
19.81322.9291.553-1.554-3.1140.001
Interaction energy analysis for fragmet #1(A:17:GLU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : -1 / q_Mulliken : -0.973 / q_NPA : -1.004
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A19GLY00.0220.0313.540-5.429-3.6360.002-0.801-0.9930.002
4A20PHE0-0.045-0.0332.190-2.899-1.7331.552-0.733-1.985-0.001
5A21THR0-0.058-0.0314.749-2.286-2.129-0.001-0.020-0.1360.000
6A22ALA00.0180.0017.098-1.389-1.3890.0000.0000.0000.000
7A23GLU-1-0.925-0.97110.62821.60521.6050.0000.0000.0000.000
8A24HIS0-0.045-0.0238.174-0.766-0.7660.0000.0000.0000.000
9A25LEU00.000-0.0117.815-1.516-1.5160.0000.0000.0000.000
10A26ALA0-0.050-0.01010.920-1.398-1.3980.0000.0000.0000.000
11A27ALA0-0.053-0.03613.720-1.019-1.0190.0000.0000.0000.000
12A28GLU-1-0.900-0.93011.40420.25320.2530.0000.0000.0000.000
13A29ALA0-0.020-0.00413.925-0.604-0.6040.0000.0000.0000.000
14A30MET0-0.053-0.01816.273-0.991-0.9910.0000.0000.0000.000
15A31ALA00.006-0.01019.503-0.049-0.0490.0000.0000.0000.000
16A32ALA0-0.045-0.03622.686-0.195-0.1950.0000.0000.0000.000
17A33ASP-1-0.859-0.94026.1479.6009.6000.0000.0000.0000.000
18A34MET00.0040.02120.2890.1110.1110.0000.0000.0000.000
19A35ASP-1-0.786-0.85125.66310.21510.2150.0000.0000.0000.000
20A36PRO00.0250.01828.9680.0110.0110.0000.0000.0000.000
21A37TRP0-0.046-0.04930.651-0.316-0.3160.0000.0000.0000.000
22A38LEU0-0.0020.00933.781-0.013-0.0130.0000.0000.0000.000
23A39VAL0-0.018-0.02434.919-0.091-0.0910.0000.0000.0000.000
24A40PHE00.0140.02438.219-0.057-0.0570.0000.0000.0000.000
25A41ASP-1-0.747-0.86337.8788.2318.2310.0000.0000.0000.000
26A42ALA00.0620.02340.339-0.090-0.0900.0000.0000.0000.000
27A43ARG10.6880.82535.414-8.586-8.5860.0000.0000.0000.000
28A44THR0-0.033-0.01338.6670.0220.0220.0000.0000.0000.000
29A45THR0-0.024-0.00841.6860.0090.0090.0000.0000.0000.000
30A46PRO00.0100.01444.235-0.064-0.0640.0000.0000.0000.000
31A47ALA00.0640.01448.0330.0050.0050.0000.0000.0000.000
32A48THR0-0.021-0.01349.476-0.022-0.0220.0000.0000.0000.000
33A49GLU-1-0.930-0.97147.5726.6256.6250.0000.0000.0000.000
34A50LEU0-0.0210.00846.5770.0570.0570.0000.0000.0000.000
35A51ASP-1-0.818-0.90948.5776.0506.0500.0000.0000.0000.000
36A52ALA00.0250.01349.556-0.020-0.0200.0000.0000.0000.000
37A53TRP0-0.0040.00140.670-0.014-0.0140.0000.0000.0000.000
38A54LEU0-0.042-0.03646.3490.0680.0680.0000.0000.0000.000
39A55ALA0-0.034-0.00648.034-0.005-0.0050.0000.0000.0000.000
40A56LYS10.8990.95943.132-7.193-7.1930.0000.0000.0000.000
41A57TYR00.001-0.00341.3550.0730.0730.0000.0000.0000.000
42A58PRO00.0470.03944.6590.0770.0770.0000.0000.0000.000
43A59PRO00.0430.00943.6470.0870.0870.0000.0000.0000.000
44A60SER0-0.120-0.07844.4370.0850.0850.0000.0000.0000.000
45A61GLN0-0.001-0.01046.115-0.008-0.0080.0000.0000.0000.000
46A62VAL00.0350.03539.8750.0660.0660.0000.0000.0000.000
47A63THR0-0.008-0.00340.2690.0750.0750.0000.0000.0000.000
48A64ARG10.7260.83830.758-9.256-9.2560.0000.0000.0000.000
49A65TYR00.000-0.02432.3850.1300.1300.0000.0000.0000.000
50A66GLY00.0440.05136.1270.1070.1070.0000.0000.0000.000
51A67ASP-1-0.812-0.89838.1087.7647.7640.0000.0000.0000.000
52A68PRO00.0460.01440.676-0.094-0.0940.0000.0000.0000.000
53A69GLY0-0.023-0.00643.338-0.097-0.0970.0000.0000.0000.000
54A70SER0-0.027-0.00141.773-0.132-0.1320.0000.0000.0000.000
55A71PRO0-0.061-0.02343.0100.0350.0350.0000.0000.0000.000
56A72ASN0-0.067-0.04937.285-0.150-0.1500.0000.0000.0000.000
57A73SER00.0450.01237.047-0.123-0.1230.0000.0000.0000.000
58A74GLU-1-0.923-0.94832.3499.5049.5040.0000.0000.0000.000
59A75PRO00.000-0.00331.592-0.265-0.2650.0000.0000.0000.000
60A76VAL0-0.0160.00133.0600.1260.1260.0000.0000.0000.000
61A77GLY00.0110.00632.319-0.153-0.1530.0000.0000.0000.000
62A78TRP0-0.088-0.06032.889-0.408-0.4080.0000.0000.0000.000
63A79ILE00.0270.03135.9240.0760.0760.0000.0000.0000.000
64A80ALA0-0.044-0.03536.876-0.051-0.0510.0000.0000.0000.000
65A81VAL00.001-0.00638.931-0.059-0.0590.0000.0000.0000.000
66A82TYR0-0.0020.00134.1010.0570.0570.0000.0000.0000.000
67A83GLY00.0970.03840.453-0.110-0.1100.0000.0000.0000.000
68A84GLN00.002-0.02541.7810.2110.2110.0000.0000.0000.000
69A85GLY00.0260.01542.019-0.081-0.0810.0000.0000.0000.000
70A86TYR0-0.024-0.00233.7850.0830.0830.0000.0000.0000.000
71A87SER00.005-0.00535.7170.1160.1160.0000.0000.0000.000
72A88PRO0-0.028-0.00131.139-0.099-0.0990.0000.0000.0000.000
73A89ASN00.019-0.00432.9480.1450.1450.0000.0000.0000.000
74A90SER0-0.032-0.00129.823-0.141-0.1410.0000.0000.0000.000
75A91GLY00.0220.01331.954-0.039-0.0390.0000.0000.0000.000
76A92ASP-1-0.853-0.93327.55411.21111.2110.0000.0000.0000.000
77A93VAL00.001-0.02726.502-0.161-0.1610.0000.0000.0000.000
78A94GLN00.0120.01721.4980.4760.4760.0000.0000.0000.000
79A95GLY00.0350.01625.2490.0060.0060.0000.0000.0000.000
80A96LEU0-0.064-0.02727.916-0.212-0.2120.0000.0000.0000.000
81A97GLN0-0.010-0.02524.8910.0340.0340.0000.0000.0000.000
82A98ALA00.0510.04425.278-0.039-0.0390.0000.0000.0000.000
83A99ALA0-0.027-0.03226.657-0.229-0.2290.0000.0000.0000.000
84A100TRP0-0.020-0.02729.017-0.494-0.4940.0000.0000.0000.000
85A101GLU-1-0.912-0.95624.28811.43211.4320.0000.0000.0000.000
86A102ALA00.0120.01228.817-0.124-0.1240.0000.0000.0000.000
87A103LEU0-0.040-0.01430.430-0.347-0.3470.0000.0000.0000.000
88A104GLN0-0.049-0.02930.774-0.105-0.1050.0000.0000.0000.000
89A105THR00.0110.00829.348-0.178-0.1780.0000.0000.0000.000
90A106SER0-0.039-0.02632.438-0.226-0.2260.0000.0000.0000.000
91A107GLY0-0.0220.01935.544-0.209-0.2090.0000.0000.0000.000
92A108ARG10.9180.92937.934-7.380-7.3800.0000.0000.0000.000
93A109PRO0-0.0090.01539.1810.0610.0610.0000.0000.0000.000
94A110ILE00.0330.01935.5960.0200.0200.0000.0000.0000.000
95A111THR00.0230.01039.855-0.099-0.0990.0000.0000.0000.000
96A112PRO00.0640.01941.0230.1570.1570.0000.0000.0000.000
97A113GLY00.0170.01442.3330.0440.0440.0000.0000.0000.000
98A114THR0-0.015-0.01439.1500.0730.0730.0000.0000.0000.000
99A115LEU00.0120.00835.8670.1580.1580.0000.0000.0000.000
100A116ARG10.9550.98238.175-6.652-6.6520.0000.0000.0000.000
101A117GLN0-0.003-0.00339.9890.1100.1100.0000.0000.0000.000
102A118LEU00.0170.01233.4950.0600.0600.0000.0000.0000.000
103A119ALA00.0290.00735.5510.1910.1910.0000.0000.0000.000
104A120ILE00.0040.00236.7560.0330.0330.0000.0000.0000.000
105A121THR0-0.047-0.01634.982-0.010-0.0100.0000.0000.0000.000
106A122HIS00.0220.01231.1830.1260.1260.0000.0000.0000.000
107A123HIS0-0.0050.00733.2820.1250.1250.0000.0000.0000.000
108A124VAL0-0.049-0.00931.5300.0910.0910.0000.0000.0000.000
109A125LEU00.000-0.01134.753-0.094-0.0940.0000.0000.0000.000
110A126SER00.0370.03435.952-0.171-0.1710.0000.0000.0000.000
111A127GLY00.005-0.01437.8420.1060.1060.0000.0000.0000.000
112A128LYS10.7490.88335.863-8.324-8.3240.0000.0000.0000.000
113A129TRP0-0.013-0.00141.036-0.054-0.0540.0000.0000.0000.000
114A130LEU0-0.038-0.00939.5530.1140.1140.0000.0000.0000.000
115A131MET00.0290.01843.716-0.234-0.2340.0000.0000.0000.000
116A132HIS00.0410.02244.8300.1250.1250.0000.0000.0000.000
117A133LEU0-0.055-0.03546.478-0.202-0.2020.0000.0000.0000.000
118A134ALA0-0.0130.00647.3780.1340.1340.0000.0000.0000.000
119A135PRO00.0490.02946.808-0.095-0.0950.0000.0000.0000.000
120A136GLY00.0360.01848.774-0.122-0.1220.0000.0000.0000.000
121A137PHE00.0480.01751.3770.0650.0650.0000.0000.0000.000
122A138LYS10.9490.96853.465-5.447-5.4470.0000.0000.0000.000
123A139LEU00.0120.02045.705-0.010-0.0100.0000.0000.0000.000
124A140ASP-1-0.747-0.85548.6736.4406.4400.0000.0000.0000.000
125A141HIS0-0.035-0.01250.2110.0300.0300.0000.0000.0000.000
126A142ALA00.013-0.00450.319-0.018-0.0180.0000.0000.0000.000
127A143TRP00.0280.01041.9760.0160.0160.0000.0000.0000.000
128A144ALA00.0060.00948.0920.0390.0390.0000.0000.0000.000
129A145GLY00.0060.00450.1750.0000.0000.0000.0000.0000.000
130A146ILE00.002-0.01446.0250.0030.0030.0000.0000.0000.000
131A147ALA00.0060.01146.0640.0680.0680.0000.0000.0000.000
132A148ARG10.8630.90247.039-5.907-5.9070.0000.0000.0000.000
133A149ALA00.0180.00749.616-0.036-0.0360.0000.0000.0000.000
134A150VAL0-0.085-0.03743.2190.0120.0120.0000.0000.0000.000
135A151VAL0-0.026-0.01145.9110.0260.0260.0000.0000.0000.000
136A152GLU-1-0.863-0.90647.6255.8825.8820.0000.0000.0000.000
137A153GLY0-0.0040.01147.761-0.065-0.0650.0000.0000.0000.000
138A154ARG10.7900.87648.849-5.961-5.9610.0000.0000.0000.000
139A155LEU0-0.033-0.01345.8650.0180.0180.0000.0000.0000.000
140A156GLN00.0080.00041.2010.1530.1530.0000.0000.0000.000
141A157VAL00.009-0.00337.7910.1250.1250.0000.0000.0000.000
142A158ALA0-0.0090.00141.255-0.115-0.1150.0000.0000.0000.000
143A159LYS10.8970.97033.633-8.831-8.8310.0000.0000.0000.000
144A160VAL0-0.0020.00239.957-0.181-0.1810.0000.0000.0000.000
145A161SER00.0140.02438.6220.1080.1080.0000.0000.0000.000
146A162PRO00.0080.01637.190-0.256-0.2560.0000.0000.0000.000
147A163ARG10.8850.93640.175-6.609-6.6090.0000.0000.0000.000
148A164ALA00.0180.01039.8070.1720.1720.0000.0000.0000.000
149A165LYS10.8390.90837.272-8.160-8.1600.0000.0000.0000.000
150A166GLU-1-0.917-0.95241.3717.2697.2690.0000.0000.0000.000
151A167GLY0-0.024-0.02044.3740.0130.0130.0000.0000.0000.000
152A168GLY00.0440.04044.0440.0980.0980.0000.0000.0000.000
153A169ARG10.8160.87543.908-6.478-6.4780.0000.0000.0000.000
154A170GLN0-0.044-0.03742.3090.0530.0530.0000.0000.0000.000
155A171VAL0-0.007-0.02039.666-0.192-0.1920.0000.0000.0000.000
156A172ILE00.0390.01642.3230.0720.0720.0000.0000.0000.000
157A173CYS0-0.075-0.03838.264-0.073-0.0730.0000.0000.0000.000
158A174VAL00.0510.02141.7290.0370.0370.0000.0000.0000.000
159A175TYR0-0.001-0.01135.5950.0100.0100.0000.0000.0000.000
160A176THR00.0140.01141.310-0.146-0.1460.0000.0000.0000.000
161A177ASP-1-0.772-0.89139.9627.4627.4620.0000.0000.0000.000
162A178ASP-1-0.766-0.86040.0387.4187.4180.0000.0000.0000.000
163A179PHE0-0.068-0.03038.935-0.219-0.2190.0000.0000.0000.000
164A180THR0-0.148-0.10842.663-0.212-0.2120.0000.0000.0000.000
165A181ASP-1-0.796-0.89845.2926.2186.2180.0000.0000.0000.000
166A182ARG10.9240.94347.600-5.702-5.7020.0000.0000.0000.000
167A183LEU0-0.017-0.00650.284-0.061-0.0610.0000.0000.0000.000
168A184GLY00.1380.08148.161-0.054-0.0540.0000.0000.0000.000
169A185VAL0-0.062-0.02845.9590.0420.0420.0000.0000.0000.000
170A186LEU0-0.015-0.02248.348-0.026-0.0260.0000.0000.0000.000
171A187GLU-1-0.887-0.92751.1495.9155.9150.0000.0000.0000.000
172A188ALA00.0380.01947.429-0.020-0.0200.0000.0000.0000.000
173A189ASP-1-0.813-0.86049.4645.8645.8640.0000.0000.0000.000
174A190SER0-0.024-0.02851.481-0.112-0.1120.0000.0000.0000.000
175A191ALA00.0040.00850.842-0.096-0.0960.0000.0000.0000.000
176A192ILE00.0010.00147.519-0.034-0.0340.0000.0000.0000.000
177A193ARG10.7350.83251.777-5.896-5.8960.0000.0000.0000.000
178A194ALA0-0.0120.00455.322-0.093-0.0930.0000.0000.0000.000
179A195ALA0-0.0060.01552.947-0.060-0.0600.0000.0000.0000.000
180A196GLY0-0.034-0.02054.986-0.012-0.0120.0000.0000.0000.000
181A197ILE0-0.0260.00250.984-0.047-0.0470.0000.0000.0000.000
182A198LYS10.9190.95254.382-5.263-5.2630.0000.0000.0000.000
183A199CYS0-0.065-0.01750.585-0.047-0.0470.0000.0000.0000.000
184A200LEU0-0.0130.00049.411-0.039-0.0390.0000.0000.0000.000
185A201LEU00.0210.02348.1510.1050.1050.0000.0000.0000.000
186A202THR0-0.012-0.01844.948-0.089-0.0890.0000.0000.0000.000
187A203TYR00.0580.01442.0630.1550.1550.0000.0000.0000.000
188A204LYS10.8370.92736.347-8.052-8.0520.0000.0000.0000.000
189A205PRO00.0430.02038.7450.1170.1170.0000.0000.0000.000
190A206ASP-1-0.799-0.88233.8508.6328.6320.0000.0000.0000.000
191A207VAL00.0730.05233.5960.2350.2350.0000.0000.0000.000
192A208TYR0-0.011-0.01033.4080.1860.1860.0000.0000.0000.000
193A209THR0-0.037-0.02231.642-0.020-0.0200.0000.0000.0000.000
194A210TYR00.0540.01928.2150.2660.2660.0000.0000.0000.000
195A211LEU0-0.024-0.00528.8300.3180.3180.0000.0000.0000.000
196A212GLY00.0220.01630.562-0.072-0.0720.0000.0000.0000.000
197A213ILE0-0.026-0.00231.336-0.211-0.2110.0000.0000.0000.000
198A214TYR00.010-0.00229.673-0.278-0.2780.0000.0000.0000.000
199A215ARG10.9600.96935.580-8.264-8.2640.0000.0000.0000.000
200A216ALA00.0200.00837.598-0.140-0.1400.0000.0000.0000.000
201A217ASN0-0.0010.00736.7100.2130.2130.0000.0000.0000.000
202A218ARG11.0231.01931.569-9.122-9.1220.0000.0000.0000.000
203A219TRP00.0130.00431.433-0.181-0.1810.0000.0000.0000.000
204A220HIS0-0.065-0.03638.403-0.268-0.2680.0000.0000.0000.000
205A221LEU00.0230.02937.994-0.202-0.2020.0000.0000.0000.000
206A222CYS0-0.047-0.01740.8970.0490.0490.0000.0000.0000.000
207A223PRO0-0.017-0.00939.1880.0550.0550.0000.0000.0000.000
208A224THR0-0.035-0.03740.6610.1590.1590.0000.0000.0000.000
209A225LEU00.0380.02943.064-0.077-0.0770.0000.0000.0000.000
210A226TYR00.0280.01545.146-0.197-0.1970.0000.0000.0000.000
211A227GLU-1-0.816-0.88847.3166.1536.1530.0000.0000.0000.000
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