FMODB ID: 8JGLY
Calculation Name: 1L2Y-A-MD57-14100ps
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-13
Reference:
Modeling method
Optimization | BaseStructure_original |
---|---|
Restraint | BaseStructure_original |
Protonation | BaseStructure_original |
Complement | No |
Water | No |
Procedure | Manual calculation |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 10 |
LigandCharge | |
Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
FMO2-HF: Electronic energy | -23306.606208 |
---|---|
FMO2-HF: Nuclear repulsion | 18704.395508 |
FMO2-HF: Total energy | -4602.210701 |
FMO2-MP2: Total energy | -4615.621537 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-57.57 | -50.159 | 3.952 | -4.201 | -7.163 | -0.028 |
Interaction energy analysis for fragmet #1(:1:GLN )
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | 3 | GLN | 0 | -0.005 | -0.003 | 3.003 | -2.666 | -0.516 | 0.114 | -1.057 | -1.207 | -0.005 | |
4 | 4 | GLN | 0 | 0.061 | 0.047 | 5.297 | 3.743 | 3.915 | -0.001 | -0.005 | -0.166 | 0.000 | |
5 | 5 | GLN | 0 | 0.040 | 0.034 | 5.377 | -3.825 | -3.825 | 0.000 | 0.000 | 0.000 | 0.000 | |
6 | 6 | GLN | 0 | -0.041 | -0.032 | 3.091 | -2.069 | 0.324 | 1.124 | -1.091 | -2.427 | -0.005 | |
7 | 7 | GLN | 0 | 0.011 | -0.011 | 6.365 | -0.841 | -0.841 | 0.000 | 0.000 | 0.000 | 0.000 | |
8 | 8 | GLN | 0 | -0.023 | -0.006 | 5.650 | 0.025 | 0.025 | 0.000 | 0.000 | 0.000 | 0.000 | |
9 | 9 | GLN | 0 | -0.041 | -0.022 | 3.917 | -5.460 | -5.238 | 0.000 | -0.074 | -0.147 | 0.000 | |
10 | 10 | GLN | -1 | -0.887 | -0.921 | 2.160 | -46.477 | -44.003 | 2.715 | -1.974 | -3.216 | -0.018 |