FMODB: The database of quantum mechanical data based on the FMO method
Last updated: 2024-07-23
All entries: 37478
Number of unique PDB entries: 7783
FMODB ID: 8JQVY
Calculation Name: 1L2Y-A-MD57-88100ps
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-13
Reference:
Modeling method
| Optimization | BaseStructure_original |
|---|---|
| Restraint | BaseStructure_original |
| Protonation | BaseStructure_original |
| Complement | No |
| Water | No |
| Procedure | Manual calculation |
FMO calculation
| FMO method | FMO2-MP2/6-31G(d) |
|---|---|
| Fragmentation | Auto |
| Number of fragment | 10 |
| LigandResidueName | |
| LigandFragmentNumber | 0 |
| LigandCharge | |
| Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
| FMO2-HF: Electronic energy | -24100.477731 |
|---|---|
| FMO2-HF: Nuclear repulsion | 19498.220434 |
| FMO2-HF: Total energy | -4602.257297 |
| FMO2-MP2: Total energy | -4615.699183 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"| IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
|---|---|---|---|---|---|
| IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
| N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
| IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
|---|---|---|---|---|---|
| IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
| -107.665 | -96.091 | 14.432 | -10.766 | -15.24 | -0.13 |
Interaction energy analysis for fragmet #1(:1:GLN )
| frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3 | 3 | GLN | 0 | 0.104 | 0.052 | 2.373 | -9.311 | -7.137 | 1.892 | -1.586 | -2.480 | -0.016 | |
| 4 | 4 | GLN | 0 | 0.018 | 0.016 | 4.613 | 2.580 | 2.746 | -0.001 | -0.005 | -0.159 | 0.000 | |
| 5 | 5 | GLN | 0 | -0.018 | -0.025 | 6.354 | -2.618 | -2.618 | 0.000 | 0.000 | 0.000 | 0.000 | |
| 6 | 6 | GLN | 0 | -0.059 | -0.044 | 2.018 | -19.677 | -18.213 | 4.553 | -2.365 | -3.652 | -0.033 | |
| 7 | 7 | GLN | 0 | 0.028 | 0.039 | 2.703 | -9.512 | -6.740 | 0.889 | -1.532 | -2.130 | -0.020 | |
| 8 | 8 | GLN | 0 | 0.026 | 0.006 | 2.501 | -26.250 | -23.479 | 3.035 | -2.695 | -3.110 | -0.031 | |
| 9 | 9 | GLN | 0 | -0.018 | -0.016 | 2.442 | -13.372 | -11.294 | 4.061 | -2.531 | -3.608 | -0.030 | |
| 10 | 10 | GLN | -1 | -0.936 | -0.960 | 4.008 | -29.505 | -29.356 | 0.003 | -0.052 | -0.101 | 0.000 |