FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 8N3MY

Calculation Name: 3OQ4-C-Xray540

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 3OQ4

Chain ID: C

ChEMBL ID:

UniProt ID: P32325

Base Structure: X-ray

Registration Date: 2025-07-10

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 196
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -790861.805573
FMO2-HF: Nuclear repulsion 749738.46844
FMO2-HF: Total energy -41123.337133
FMO2-MP2: Total energy -41243.316307


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(C:123:ASP)


Summations of interaction energy for fragment #1(C:123:ASP)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
0.9113.286-0.017-1.367-0.9910.008
Interaction energy analysis for fragmet #1(C:123:ASP)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.156 / q_NPA : 0.006
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4C124SER0-0.0720.0594.330-0.0950.1740.001-0.152-0.1180.000
5C125ARG00.107-0.0983.795-2.189-0.254-0.016-1.189-0.7300.008
6C125ARG10.8141.0703.9074.1074.208-0.001-0.014-0.0860.000
7C126ILE00.138-0.1076.1820.2070.2070.0000.0000.0000.000
8C126ILE0-0.0950.1017.8850.0690.0690.0000.0000.0000.000
9C127TYR00.077-0.0799.589-0.059-0.0590.0000.0000.0000.000
10C127TYR0-0.0600.10312.5090.0140.0140.0000.0000.0000.000
11C128PHE00.084-0.09412.8920.0990.0990.0000.0000.0000.000
12C128PHE0-0.1380.06013.3060.0160.0160.0000.0000.0000.000
13C129ASP00.181-0.08916.201-0.052-0.0520.0000.0000.0000.000
14C129ASP-1-0.866-0.76518.743-0.130-0.1300.0000.0000.0000.000
15C130ILE0-0.036-0.12819.0830.0400.0400.0000.0000.0000.000
16C130ILE0-0.0530.10020.018-0.002-0.0020.0000.0000.0000.000
17C131THR00.049-0.07722.0330.0120.0120.0000.0000.0000.000
18C131THR0-0.0600.07023.531-0.004-0.0040.0000.0000.0000.000
19C132ASP00.046-0.10024.2270.0070.0070.0000.0000.0000.000
20C132ASP-1-0.899-0.78326.646-0.037-0.0370.0000.0000.0000.000
21C133ASP00.059-0.09526.923-0.013-0.0130.0000.0000.0000.000
22C133ASP-1-0.854-0.81027.500-0.010-0.0100.0000.0000.0000.000
23C134VAL00.062-0.11029.3290.0060.0060.0000.0000.0000.000
24C134VAL0-0.0840.10729.5010.0020.0020.0000.0000.0000.000
25C135GLU00.128-0.14131.335-0.008-0.0080.0000.0000.0000.000
26C135GLU-1-0.987-0.79135.351-0.020-0.0200.0000.0000.0000.000
27C136MET00.050-0.13333.1120.0080.0080.0000.0000.0000.000
28C136MET0-0.0890.11128.3400.0060.0060.0000.0000.0000.000
29C137ASN00.092-0.07734.415-0.008-0.0080.0000.0000.0000.000
30C137ASN0-0.0290.09435.7630.0020.0020.0000.0000.0000.000
31C138THR00.031-0.07333.9860.0020.0020.0000.0000.0000.000
32C138THR00.0080.08334.360-0.001-0.0010.0000.0000.0000.000
33C139TYR00.154-0.06433.073-0.003-0.0030.0000.0000.0000.000
34C139TYR0-0.0730.10334.1470.0030.0030.0000.0000.0000.000
35C140ASN00.077-0.08131.8140.0040.0040.0000.0000.0000.000
36C140ASN0-0.0780.05531.6870.0080.0080.0000.0000.0000.000
37C141LYS00.169-0.08029.4160.0090.0090.0000.0000.0000.000
38C141LYS10.8341.09229.5400.0320.0320.0000.0000.0000.000
39C142SER00.126-0.04028.160-0.004-0.0040.0000.0000.0000.000
40C142SER0-0.0810.05230.7020.0030.0030.0000.0000.0000.000
41C143LYS00.073-0.09028.0460.0020.0020.0000.0000.0000.000
42C143LYS10.8011.04928.729-0.063-0.0630.0000.0000.0000.000
43C144MET00.018-0.14625.7140.0210.0210.0000.0000.0000.000
44C144MET0-0.0390.11624.7100.0050.0050.0000.0000.0000.000
45C145ASP00.138-0.09523.6710.0150.0150.0000.0000.0000.000
46C145ASP-1-0.994-0.83324.823-0.046-0.0460.0000.0000.0000.000
47C146LYS00.123-0.07622.950-0.003-0.0030.0000.0000.0000.000
48C146LYS10.8611.06625.736-0.037-0.0370.0000.0000.0000.000
49C147ARG00.091-0.08922.7420.0150.0150.0000.0000.0000.000
50C147ARG10.8831.05422.702-0.101-0.1010.0000.0000.0000.000
51C148ARG00.115-0.06919.6040.0440.0440.0000.0000.0000.000
52C148ARG10.7521.01418.5630.0450.0450.0000.0000.0000.000
53C149ASP00.059-0.11518.2300.0120.0120.0000.0000.0000.000
54C149ASP-1-0.944-0.80620.614-0.031-0.0310.0000.0000.0000.000
55C150LEU00.126-0.12518.3390.0060.0060.0000.0000.0000.000
56C150LEU0-0.1200.13920.532-0.003-0.0030.0000.0000.0000.000
57C151LEU00.060-0.08116.9010.0500.0500.0000.0000.0000.000
58C151LEU0-0.0760.08416.2460.0000.0000.0000.0000.0000.000
59C152LYS00.134-0.06514.1650.0860.0860.0000.0000.0000.000
60C152LYS10.8051.05014.3010.1140.1140.0000.0000.0000.000
61C153ARG00.023-0.13613.6440.0260.0260.0000.0000.0000.000
62C153ARG10.8701.07117.334-0.096-0.0960.0000.0000.0000.000
63C154GLY00.056-0.06014.5820.0400.0400.0000.0000.0000.000
64C155PHE00.0850.03910.9960.1350.1350.0000.0000.0000.000
65C155PHE0-0.1300.0329.931-0.026-0.0260.0000.0000.0000.000
66C156LEU00.099-0.0899.5240.2330.2330.0000.0000.0000.000
67C156LEU0-0.0970.07910.403-0.042-0.0420.0000.0000.0000.000
68C157THR00.010-0.08910.3590.0790.0790.0000.0000.0000.000
69C157THR0-0.0400.07613.887-0.032-0.0320.0000.0000.0000.000
70C158LEU00.037-0.11110.313-0.050-0.0500.0000.0000.0000.000
71C158LEU0-0.1000.1029.8840.0290.0290.0000.0000.0000.000
72C159GLY0-0.013-0.0957.0770.4680.4680.0000.0000.0000.000
73C160ALA00.1000.0245.1430.5090.5090.0000.0000.0000.000
74C160ALA0-0.1210.0606.847-0.006-0.0060.0000.0000.0000.000
75C161GLN00.052-0.1255.7290.0870.0870.0000.0000.0000.000
76C161GLN0-0.0700.1234.389-0.396-0.326-0.001-0.012-0.0570.000
77C162ILE00.053-0.1337.307-0.120-0.1200.0000.0000.0000.000
78C162ILE0-0.1200.10010.0480.0340.0340.0000.0000.0000.000
79C163THR00.043-0.09610.6710.0070.0070.0000.0000.0000.000
80C163THR0-0.0430.0779.0320.0110.0110.0000.0000.0000.000
81C164GLN00.159-0.06611.5250.1390.1390.0000.0000.0000.000
82C164GLN0-0.1160.08415.4220.0340.0340.0000.0000.0000.000
83C165PHE0-0.004-0.14213.8180.1200.1200.0000.0000.0000.000
84C165PHE0-0.0210.13014.422-0.003-0.0030.0000.0000.0000.000
85C166PHE00.138-0.06513.179-0.156-0.1560.0000.0000.0000.000
86C166PHE0-0.0860.08414.2140.0100.0100.0000.0000.0000.000
87C167ASP0-0.024-0.13712.8390.1200.1200.0000.0000.0000.000
88C167ASP-1-0.820-0.75611.094-1.530-1.5300.0000.0000.0000.000
89C168THR00.037-0.08312.196-0.023-0.0230.0000.0000.0000.000
90C168THR0-0.0520.05813.031-0.014-0.0140.0000.0000.0000.000
91C169THR00.044-0.0758.3260.1670.1670.0000.0000.0000.000
92C169THR0-0.0760.0327.336-0.243-0.2430.0000.0000.0000.000
93C170VAL00.091-0.0946.875-1.014-1.0140.0000.0000.0000.000
94C170VAL0-0.1010.09710.2060.0700.0700.0000.0000.0000.000
95C171THR00.052-0.0966.7980.0350.0350.0000.0000.0000.000
96C171THR0-0.0120.1074.809-0.101-0.1010.0000.0000.0000.000
97C172ILE00.045-0.1408.1840.3530.3530.0000.0000.0000.000
98C172ILE0-0.0970.1038.5750.0640.0640.0000.0000.0000.000
99C173VAL00.058-0.09410.580-0.157-0.1570.0000.0000.0000.000
100C173VAL0-0.0500.13213.479-0.008-0.0080.0000.0000.0000.000
101C174ILE00.086-0.12213.8680.0890.0890.0000.0000.0000.000
102C174ILE0-0.1340.10813.1910.0140.0140.0000.0000.0000.000
103C175THR00.021-0.11516.070-0.056-0.0560.0000.0000.0000.000
104C175THR0-0.0520.04919.2480.0040.0040.0000.0000.0000.000
105C176ARG0-0.014-0.12619.7200.0440.0440.0000.0000.0000.000
106C176ARG10.7690.97122.3910.0410.0410.0000.0000.0000.000
107C177ARG00.099-0.06422.7930.0100.0100.0000.0000.0000.000
108C177ARG10.6750.95822.1740.1060.1060.0000.0000.0000.000
109C178SER00.043-0.10723.9160.0210.0210.0000.0000.0000.000
110C178SER0-0.0370.09827.578-0.001-0.0010.0000.0000.0000.000
111C179VAL00.119-0.10122.651-0.023-0.0230.0000.0000.0000.000
112C179VAL0-0.1110.08021.0110.0050.0050.0000.0000.0000.000
113C180GLU00.037-0.14123.603-0.007-0.0070.0000.0000.0000.000
114C180GLU-1-0.999-0.82526.0970.1030.1030.0000.0000.0000.000
115C181ASN00.019-0.09626.399-0.001-0.0010.0000.0000.0000.000
116C181ASN0-0.1120.07228.487-0.001-0.0010.0000.0000.0000.000
117C182ILE00.173-0.07723.550-0.014-0.0140.0000.0000.0000.000
118C182ILE0-0.1050.07720.8470.0000.0000.0000.0000.0000.000
119C183TYR00.059-0.10625.057-0.022-0.0220.0000.0000.0000.000
120C183TYR0-0.0620.09726.7160.0000.0000.0000.0000.0000.000
121C184LEU00.017-0.11826.927-0.009-0.0090.0000.0000.0000.000
122C184LEU0-0.0730.11730.0180.0000.0000.0000.0000.0000.000
123C185LEU00.031-0.11026.5540.0000.0000.0000.0000.0000.000
124C185LEU0-0.0750.10024.390-0.004-0.0040.0000.0000.0000.000
125C186LYS00.141-0.05927.6490.0010.0010.0000.0000.0000.000
126C186LYS10.8871.02627.4880.1190.1190.0000.0000.0000.000
127C187ASP00.182-0.11425.122-0.005-0.0050.0000.0000.0000.000
128C187ASP-1-1.000-0.80525.419-0.143-0.1430.0000.0000.0000.000
129C188THR0-0.012-0.06723.582-0.026-0.0260.0000.0000.0000.000
130C188THR0-0.0940.04325.434-0.006-0.0060.0000.0000.0000.000
131C189ASP00.089-0.08722.863-0.038-0.0380.0000.0000.0000.000
132C189ASP-1-0.856-0.76522.882-0.146-0.1460.0000.0000.0000.000
133C190ILE00.007-0.12118.9520.0050.0050.0000.0000.0000.000
134C190ILE0-0.0040.11417.647-0.006-0.0060.0000.0000.0000.000
135C191LEU00.060-0.11918.396-0.039-0.0390.0000.0000.0000.000
136C191LEU0-0.0150.12518.6930.0050.0050.0000.0000.0000.000
137C192SER0-0.006-0.10019.8040.0220.0220.0000.0000.0000.000
138C192SER0-0.0290.08723.0090.0080.0080.0000.0000.0000.000
139C193ARG00.109-0.07518.9040.0260.0260.0000.0000.0000.000
140C193ARG10.8731.06617.2750.4530.4530.0000.0000.0000.000
141C194ALA00.163-0.07815.484-0.053-0.0530.0000.0000.0000.000
142C194ALA0-0.0850.10415.3960.0060.0060.0000.0000.0000.000
143C195LYS00.039-0.11915.6370.0090.0090.0000.0000.0000.000
144C195LYS10.8741.08217.684-0.071-0.0710.0000.0000.0000.000
145C196LYS00.110-0.06317.7750.0330.0330.0000.0000.0000.000
146C196LYS10.8461.06119.2570.2310.2310.0000.0000.0000.000
147C197ASN0-0.034-0.11314.7250.0350.0350.0000.0000.0000.000
148C197ASN0-0.1480.02413.683-0.070-0.0700.0000.0000.0000.000
149C198TYR00.042-0.08413.235-0.070-0.0700.0000.0000.0000.000
150C198TYR0-0.0770.08713.5540.0310.0310.0000.0000.0000.000
151C199MET00.126-0.10011.4190.1120.1120.0000.0000.0000.000
152C199MET0-0.1230.11911.0930.0250.0250.0000.0000.0000.000
153C200LYS00.040-0.10811.5420.0210.0210.0000.0000.0000.000
154C200LYS10.8831.0719.969-1.035-1.0350.0000.0000.0000.000
155C201VAL00.095-0.12713.364-0.068-0.0680.0000.0000.0000.000
156C201VAL0-0.0780.14916.360-0.006-0.0060.0000.0000.0000.000
157C202TRP0-0.002-0.14816.2320.0300.0300.0000.0000.0000.000
158C202TRP0-0.0620.09312.124-0.012-0.0120.0000.0000.0000.000
159C203SER00.115-0.02017.338-0.045-0.0450.0000.0000.0000.000
160C203SER00.0040.09021.6990.0170.0170.0000.0000.0000.000
161C204TYR00.117-0.10019.0700.0480.0480.0000.0000.0000.000
162C204TYR0-0.0240.12819.5890.0000.0000.0000.0000.0000.000
163C205GLU00.047-0.11220.1900.0420.0420.0000.0000.0000.000
164C205GLU-1-0.954-0.83723.6020.1430.1430.0000.0000.0000.000
165C206LYS00.084-0.10819.5670.0280.0280.0000.0000.0000.000
166C206LYS10.8291.06117.044-0.411-0.4110.0000.0000.0000.000
167C207ALA00.089-0.09116.1660.0850.0850.0000.0000.0000.000
168C207ALA0-0.0630.10915.840-0.010-0.0100.0000.0000.0000.000
169C208ALA00.137-0.08816.8170.0820.0820.0000.0000.0000.000
170C208ALA0-0.0980.09120.744-0.012-0.0120.0000.0000.0000.000
171C209ARG00.002-0.10419.4120.0200.0200.0000.0000.0000.000
172C209ARG10.9081.04620.480-0.323-0.3230.0000.0000.0000.000
173C210PHE00.103-0.03515.644-0.007-0.0070.0000.0000.0000.000
174C210PHE0-0.0970.06311.220-0.006-0.0060.0000.0000.0000.000
175C211LEU00.110-0.08415.6710.1000.1000.0000.0000.0000.000
176C211LEU0-0.0870.09013.498-0.010-0.0100.0000.0000.0000.000
177C212LYS00.123-0.05516.5400.0290.0290.0000.0000.0000.000
178C212LYS10.8331.03920.920-0.303-0.3030.0000.0000.0000.000
179C213ASN00.103-0.03919.313-0.027-0.0270.0000.0000.0000.000
180C213ASN0-0.1840.01418.480-0.045-0.0450.0000.0000.0000.000
181C214LEU00.036-0.08215.806-0.014-0.0140.0000.0000.0000.000
182C214LEU0-0.0970.06913.0520.0490.0490.0000.0000.0000.000
183C215ASP00.056-0.10617.2990.0340.0340.0000.0000.0000.000
184C215ASP-1-1.003-0.85220.0250.5110.5110.0000.0000.0000.000
185C216VAL00.115-0.08817.350-0.033-0.0330.0000.0000.0000.000
186C216VAL0-0.1100.06615.2300.0070.0070.0000.0000.0000.000
187C217ASP00.114-0.13318.693-0.010-0.0100.0000.0000.0000.000
188C217ASP-1-0.957-0.80122.8020.2670.2670.0000.0000.0000.000
189C218LEU00.047-0.10720.678-0.011-0.0110.0000.0000.0000.000
190C218LEU0-0.1280.04818.193-0.006-0.0060.0000.0000.0000.000
191C219ASP00.118-0.07821.516-0.021-0.0210.0000.0000.0000.000
192C219ASP-1-0.968-0.84525.5090.2280.2280.0000.0000.0000.000
193C220HIS0-0.056-0.13024.464-0.027-0.0270.0000.0000.0000.000
194C220HIS0-0.1000.10325.043-0.016-0.0160.0000.0000.0000.000
195C221LEU0-0.049-0.14720.679-0.024-0.0240.0000.0000.0000.000
196C221LEU0-0.002-0.00217.9140.0000.0000.0000.0000.0000.000