FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 8QLMY

Calculation Name: 5ESW-A-Xray547

Preferred Name:

Target Type:

Ligand Name: phosphate ion

Ligand 3-letter code: PO4

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 5ESW

Chain ID: A

ChEMBL ID:

UniProt ID: Q5ZVC1

Base Structure: X-ray

Registration Date: 2025-10-05

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 190
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2027017.198458
FMO2-HF: Nuclear repulsion 1952745.203245
FMO2-HF: Total energy -74271.995213
FMO2-MP2: Total energy -74488.463832


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:-1:HIS)


Summations of interaction energy for fragment #1(A:-1:HIS)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-54.273-52.306-0.007-0.829-1.13-0.001
Interaction energy analysis for fragmet #1(A:-1:HIS)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.846 / q_NPA : 0.912
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A1MET00.0160.0123.541-1.892-0.043-0.006-0.821-1.022-0.001
4A2THR0-0.031-0.0304.5651.6181.736-0.001-0.008-0.1080.000
5A3ILE00.0530.0196.8761.8641.8640.0000.0000.0000.000
6A4PRO00.0510.0099.1651.1401.1400.0000.0000.0000.000
7A5ASP-1-0.830-0.8887.245-31.017-31.0170.0000.0000.0000.000
8A6LYS10.9570.98310.65219.37119.3710.0000.0000.0000.000
9A7ILE0-0.027-0.00312.8761.3721.3720.0000.0000.0000.000
10A8LYS10.9000.96010.83024.65924.6590.0000.0000.0000.000
11A9ALA00.0510.02814.6591.0531.0530.0000.0000.0000.000
12A10VAL0-0.041-0.01416.4410.9040.9040.0000.0000.0000.000
13A11TYR00.000-0.00318.5870.7250.7250.0000.0000.0000.000
14A12GLU-1-0.930-0.96716.921-16.901-16.9010.0000.0000.0000.000
15A13LYS10.8060.89420.71114.19214.1920.0000.0000.0000.000
16A14SER0-0.064-0.02622.4760.5900.5900.0000.0000.0000.000
17A15THR0-0.031-0.01324.5540.2850.2850.0000.0000.0000.000
18A16CYS0-0.054-0.02128.3770.1150.1150.0000.0000.0000.000
19A17LEU0-0.038-0.01430.0380.2210.2210.0000.0000.0000.000
20A18TYR00.005-0.00432.4680.3750.3750.0000.0000.0000.000
21A19THR0-0.006-0.04032.384-0.309-0.3090.0000.0000.0000.000
22A20SER00.0470.01131.7950.0880.0880.0000.0000.0000.000
23A21ASN0-0.010-0.00933.4500.0220.0220.0000.0000.0000.000
24A22GLU-1-0.808-0.87436.680-8.140-8.1400.0000.0000.0000.000
25A23VAL00.0010.00833.2220.1610.1610.0000.0000.0000.000
26A24GLU-1-0.801-0.86235.356-8.400-8.4000.0000.0000.0000.000
27A25ALA00.0420.01738.2990.1780.1780.0000.0000.0000.000
28A26ALA0-0.077-0.03438.7370.2120.2120.0000.0000.0000.000
29A27LEU00.0230.00535.9330.1570.1570.0000.0000.0000.000
30A28ASP-1-0.819-0.89440.456-7.197-7.1970.0000.0000.0000.000
31A29ARG10.8640.93941.4377.4457.4450.0000.0000.0000.000
32A30MET0-0.044-0.00639.6830.0780.0780.0000.0000.0000.000
33A31ALA00.0220.01743.8700.1120.1120.0000.0000.0000.000
34A32ILE00.0010.00745.4030.1380.1380.0000.0000.0000.000
35A33LYS10.8230.88747.9296.1646.1640.0000.0000.0000.000
36A34ILE00.0110.01643.6440.0910.0910.0000.0000.0000.000
37A35HIS00.0030.00348.078-0.017-0.0170.0000.0000.0000.000
38A36GLU-1-0.881-0.93150.536-5.823-5.8230.0000.0000.0000.000
39A37THR0-0.071-0.03350.8100.1310.1310.0000.0000.0000.000
40A38LEU0-0.044-0.04247.7230.0600.0600.0000.0000.0000.000
41A39GLN00.0130.03151.807-0.046-0.0460.0000.0000.0000.000
42A40ASP-1-0.906-0.96553.235-5.474-5.4740.0000.0000.0000.000
43A41LYS10.7870.87952.3835.8625.8620.0000.0000.0000.000
44A42ASN0-0.0300.00552.046-0.073-0.0730.0000.0000.0000.000
45A43PRO00.0050.02047.924-0.022-0.0220.0000.0000.0000.000
46A44VAL00.0120.00744.136-0.072-0.0720.0000.0000.0000.000
47A45ILE0-0.009-0.01341.234-0.018-0.0180.0000.0000.0000.000
48A46ILE0-0.009-0.01238.973-0.134-0.1340.0000.0000.0000.000
49A47CYS0-0.0050.00433.846-0.097-0.0970.0000.0000.0000.000
50A48VAL0-0.0050.00133.639-0.023-0.0230.0000.0000.0000.000
51A49MET0-0.048-0.00930.136-0.219-0.2190.0000.0000.0000.000
52A50VAL0-0.032-0.04025.8200.0420.0420.0000.0000.0000.000
53A51GLY00.0870.04228.962-0.019-0.0190.0000.0000.0000.000
54A52GLY00.0550.02230.0250.0110.0110.0000.0000.0000.000
55A53LEU0-0.015-0.00328.5940.1870.1870.0000.0000.0000.000
56A54VAL0-0.012-0.00628.0840.1680.1680.0000.0000.0000.000
57A55PRO00.0110.00631.4120.2070.2070.0000.0000.0000.000
58A56LEU00.0300.02134.5090.2110.2110.0000.0000.0000.000
59A57GLY0-0.023-0.01834.3970.2000.2000.0000.0000.0000.000
60A58ASN0-0.058-0.03932.5530.1860.1860.0000.0000.0000.000
61A59LEU00.0260.02436.5600.1810.1810.0000.0000.0000.000
62A60LEU0-0.009-0.00539.1410.2060.2060.0000.0000.0000.000
63A61HIS0-0.032-0.01837.2770.3380.3380.0000.0000.0000.000
64A62ARG10.7250.83238.2587.8877.8870.0000.0000.0000.000
65A63LEU0-0.051-0.01743.5210.1370.1370.0000.0000.0000.000
66A64ASP-1-0.929-0.94946.377-6.121-6.1210.0000.0000.0000.000
67A65PHE0-0.008-0.01447.5140.1410.1410.0000.0000.0000.000
68A66PRO0-0.036-0.01749.343-0.119-0.1190.0000.0000.0000.000
69A67LEU00.0250.01344.4490.0140.0140.0000.0000.0000.000
70A68GLU-1-0.840-0.89345.707-6.497-6.4970.0000.0000.0000.000
71A69VAL0-0.023-0.01639.207-0.057-0.0570.0000.0000.0000.000
72A70ASP-1-0.875-0.92640.305-7.580-7.5800.0000.0000.0000.000
73A71TYR0-0.081-0.05034.004-0.275-0.2750.0000.0000.0000.000
74A72VAL00.0280.01936.3800.1170.1170.0000.0000.0000.000
75A73HIS00.0180.01628.965-0.565-0.5650.0000.0000.0000.000
76A74ALA00.0600.03633.7410.1190.1190.0000.0000.0000.000
77A75THR0-0.046-0.02228.985-0.328-0.3280.0000.0000.0000.000
78A76ARG10.9200.94031.5119.0629.0620.0000.0000.0000.000
79A77TYR00.0280.03030.975-0.479-0.4790.0000.0000.0000.000
80A78ARG10.9710.97029.14210.17610.1760.0000.0000.0000.000
81A79GLY00.0010.00332.4390.1490.1490.0000.0000.0000.000
82A80ASP-1-0.747-0.87035.336-7.806-7.8060.0000.0000.0000.000
83A81LEU0-0.042-0.02437.203-0.063-0.0630.0000.0000.0000.000
84A82THR0-0.036-0.02139.4930.1980.1980.0000.0000.0000.000
85A83GLY00.0140.00638.9090.0780.0780.0000.0000.0000.000
86A84GLY0-0.047-0.01439.9910.0790.0790.0000.0000.0000.000
87A85ASP-1-0.936-0.97337.427-8.189-8.1890.0000.0000.0000.000
88A86ILE0-0.052-0.02436.017-0.302-0.3020.0000.0000.0000.000
89A87LEU00.0170.01930.8590.1540.1540.0000.0000.0000.000
90A88TRP00.028-0.00933.875-0.250-0.2500.0000.0000.0000.000
91A89LYS10.7960.89627.29910.72910.7290.0000.0000.0000.000
92A90VAL00.0040.00133.576-0.023-0.0230.0000.0000.0000.000
93A91ARG10.9130.96336.1397.5467.5460.0000.0000.0000.000
94A92PRO00.0410.02539.732-0.040-0.0400.0000.0000.0000.000
95A93SER00.0600.03442.3420.1300.1300.0000.0000.0000.000
96A94SER00.0440.00644.7290.0330.0330.0000.0000.0000.000
97A95ASN0-0.027-0.02046.5140.2100.2100.0000.0000.0000.000
98A96LEU00.0000.00144.1070.0500.0500.0000.0000.0000.000
99A97ALA00.0210.01848.7030.0770.0770.0000.0000.0000.000
100A98GLY0-0.047-0.03152.1200.0560.0560.0000.0000.0000.000
101A99ARG10.7410.85249.9186.3136.3130.0000.0000.0000.000
102A100THR00.002-0.01350.1530.0040.0040.0000.0000.0000.000
103A101VAL0-0.018-0.01444.992-0.086-0.0860.0000.0000.0000.000
104A102LEU0-0.0100.00243.2030.0820.0820.0000.0000.0000.000
105A103VAL0-0.017-0.00439.610-0.132-0.1320.0000.0000.0000.000
106A104VAL0-0.002-0.00237.2650.0670.0670.0000.0000.0000.000
107A105ASP-1-0.820-0.93233.732-9.218-9.2180.0000.0000.0000.000
108A106ASP-1-0.850-0.93429.958-9.810-9.8100.0000.0000.0000.000
109A107ILE0-0.021-0.02631.2100.1710.1710.0000.0000.0000.000
110A108LEU0-0.0300.00534.321-0.009-0.0090.0000.0000.0000.000
111A109ASP-1-0.785-0.87732.408-9.188-9.1880.0000.0000.0000.000
112A110GLY00.0100.00635.403-0.076-0.0760.0000.0000.0000.000
113A111GLY00.025-0.00836.8450.2300.2300.0000.0000.0000.000
114A112ILE0-0.0170.00237.6040.0560.0560.0000.0000.0000.000
115A113THR00.004-0.01033.9800.1600.1600.0000.0000.0000.000
116A114LEU00.0390.03837.1630.0930.0930.0000.0000.0000.000
117A115ALA00.0240.01038.7940.1630.1630.0000.0000.0000.000
118A116ALA00.0070.00239.8290.1640.1640.0000.0000.0000.000
119A117ILE0-0.012-0.00536.2120.1230.1230.0000.0000.0000.000
120A118ILE00.0170.00240.8650.1470.1470.0000.0000.0000.000
121A119ASN0-0.018-0.02043.9800.2700.2700.0000.0000.0000.000
122A120GLU-1-0.868-0.93242.414-6.990-6.9900.0000.0000.0000.000
123A121ILE0-0.011-0.01441.9820.1100.1100.0000.0000.0000.000
124A122LYS10.9380.97845.8756.5526.5520.0000.0000.0000.000
125A123ALA0-0.035-0.00347.5610.1440.1440.0000.0000.0000.000
126A124MET0-0.085-0.03745.6300.1150.1150.0000.0000.0000.000
127A125GLY00.0230.00948.9340.0570.0570.0000.0000.0000.000
128A126ALA0-0.0280.00248.8740.1020.1020.0000.0000.0000.000
129A127ALA0-0.035-0.01050.9990.0520.0520.0000.0000.0000.000
130A128GLU-1-0.799-0.85152.032-5.779-5.7790.0000.0000.0000.000
131A129VAL0-0.028-0.02145.817-0.096-0.0960.0000.0000.0000.000
132A130TYR0-0.045-0.02447.2160.0350.0350.0000.0000.0000.000
133A131SER0-0.033-0.04542.719-0.181-0.1810.0000.0000.0000.000
134A132ALA00.003-0.00341.4650.1030.1030.0000.0000.0000.000
135A133VAL0-0.035-0.01136.849-0.164-0.1640.0000.0000.0000.000
136A134LEU00.0240.01833.2810.1630.1630.0000.0000.0000.000
137A135VAL0-0.002-0.01633.7580.1230.1230.0000.0000.0000.000
138A136ASP-1-0.754-0.86236.702-7.581-7.5810.0000.0000.0000.000
139A137LYS10.7820.90631.3619.5669.5660.0000.0000.0000.000
140A138TYR0-0.031-0.04237.9820.1830.1830.0000.0000.0000.000
141A139ARG10.8170.89140.9927.4827.4820.0000.0000.0000.000
142A140LYS10.7550.87934.2459.0229.0220.0000.0000.0000.000
143A141ARG10.7710.84640.3597.3847.3840.0000.0000.0000.000
144A142VAL00.0080.00338.960-0.032-0.0320.0000.0000.0000.000
145A143PRO00.0230.00042.2850.0990.0990.0000.0000.0000.000
146A144ASN0-0.039-0.02742.547-0.018-0.0180.0000.0000.0000.000
147A145GLY00.0360.02241.069-0.138-0.1380.0000.0000.0000.000
148A146LEU0-0.042-0.01041.1970.1830.1830.0000.0000.0000.000
149A147GLN00.000-0.01642.913-0.048-0.0480.0000.0000.0000.000
150A148LYS10.9270.96145.0196.4336.4330.0000.0000.0000.000
151A149ALA00.0580.05042.1570.0070.0070.0000.0000.0000.000
152A150ASP-1-0.889-0.92044.317-6.450-6.4500.0000.0000.0000.000
153A151PHE0-0.018-0.02443.8710.0760.0760.0000.0000.0000.000
154A152VAL00.0090.00340.477-0.171-0.1710.0000.0000.0000.000
155A153GLY00.0290.02139.7140.1370.1370.0000.0000.0000.000
156A154LEU0-0.052-0.03336.3500.1330.1330.0000.0000.0000.000
157A155GLN0-0.019-0.00439.073-0.016-0.0160.0000.0000.0000.000
158A156VAL00.0070.00334.700-0.059-0.0590.0000.0000.0000.000
159A157GLU-1-0.737-0.83836.676-7.511-7.5110.0000.0000.0000.000
160A158ASP-1-0.835-0.92033.930-9.288-9.2880.0000.0000.0000.000
161A159HIS00.0240.01330.734-0.316-0.3160.0000.0000.0000.000
162A160TYR00.0320.01826.070-0.011-0.0110.0000.0000.0000.000
163A161ILE0-0.041-0.02527.512-0.122-0.1220.0000.0000.0000.000
164A162PHE00.0020.00123.094-0.218-0.2180.0000.0000.0000.000
165A163GLY00.000-0.00526.0540.1930.1930.0000.0000.0000.000
166A164TYR0-0.064-0.06426.9770.2220.2220.0000.0000.0000.000
167A165GLY00.0330.01227.7480.3710.3710.0000.0000.0000.000
168A166MET00.0240.03727.344-0.200-0.2000.0000.0000.0000.000
169A167ASP-1-0.858-0.92322.401-12.612-12.6120.0000.0000.0000.000
170A168TYR0-0.076-0.08118.026-0.096-0.0960.0000.0000.0000.000
171A169HIS0-0.038-0.01518.393-0.659-0.6590.0000.0000.0000.000
172A170GLU-1-0.879-0.94518.593-13.603-13.6030.0000.0000.0000.000
173A171TYR0-0.042-0.02513.181-0.416-0.4160.0000.0000.0000.000
174A172LEU00.000-0.01018.8020.5220.5220.0000.0000.0000.000
175A173ARG10.8480.92721.31112.45812.4580.0000.0000.0000.000
176A174ASN0-0.014-0.01120.8990.2790.2790.0000.0000.0000.000
177A175ALA0-0.0110.01223.6470.0780.0780.0000.0000.0000.000
178A176PRO00.0020.00025.0750.3850.3850.0000.0000.0000.000
179A177GLY00.023-0.00828.3960.2790.2790.0000.0000.0000.000
180A178ILE0-0.038-0.00929.436-0.179-0.1790.0000.0000.0000.000
181A179PHE00.024-0.00326.0080.1580.1580.0000.0000.0000.000
182A180ILE00.0160.01127.337-0.091-0.0910.0000.0000.0000.000
183A181VAL0-0.005-0.01222.201-0.337-0.3370.0000.0000.0000.000
184A182HIS00.0180.01923.0530.0680.0680.0000.0000.0000.000
185A183PRO00.0590.01023.972-0.402-0.4020.0000.0000.0000.000
186A184ASP-1-0.858-0.90822.056-12.880-12.8800.0000.0000.0000.000
187A185HIS0-0.163-0.09217.535-1.079-1.0790.0000.0000.0000.000
188A186GLU-1-0.845-0.89921.056-13.829-13.8290.0000.0000.0000.000
189A187ALA00.0070.01623.9640.4090.4090.0000.0000.0000.000
190A188SER-1-0.976-0.98826.786-9.783-9.7830.0000.0000.0000.000