FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 94732

Calculation Name: 3MUQ-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 3MUQ

Chain ID: A

ChEMBL ID:

UniProt ID: Q87PK2

Base Structure: X-ray

Registration Date: 2023-06-22

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 233
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2813091.640085
FMO2-HF: Nuclear repulsion 2721711.23467
FMO2-HF: Total energy -91380.405415
FMO2-MP2: Total energy -91646.949271


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:27:GLU)


Summations of interaction energy for fragment #1(A:27:GLU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-58.23-61.23831.281-14.243-14.0320.141
Interaction energy analysis for fragmet #1(A:27:GLU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : -1 / q_Mulliken : -0.793 / q_NPA : -0.885
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A29VAL0-0.0040.0093.8307.1069.070-0.014-0.778-1.1730.002
4A30ARG10.8350.9066.580-39.000-39.0000.0000.0000.0000.000
5A31LEU00.0310.0119.920-0.521-0.5210.0000.0000.0000.000
6A32ALA00.0030.02113.003-1.392-1.3920.0000.0000.0000.000
7A33THR0-0.005-0.02516.445-0.296-0.2960.0000.0000.0000.000
8A34THR00.004-0.01119.323-0.303-0.3030.0000.0000.0000.000
9A35THR00.007-0.00622.7120.1760.1760.0000.0000.0000.000
10A36SER00.003-0.00324.341-0.058-0.0580.0000.0000.0000.000
11A37THR0-0.004-0.00920.485-0.332-0.3320.0000.0000.0000.000
12A38TYR0-0.0050.01918.279-0.061-0.0610.0000.0000.0000.000
13A39HIS00.0400.00721.4570.1290.1290.0000.0000.0000.000
14A40SER0-0.082-0.05023.127-0.377-0.3770.0000.0000.0000.000
15A41GLY00.0780.04021.493-0.387-0.3870.0000.0000.0000.000
16A42LEU0-0.051-0.02119.6580.3240.3240.0000.0000.0000.000
17A43LEU00.006-0.01915.2300.4800.4800.0000.0000.0000.000
18A44ASP-1-0.858-0.92416.00516.53416.5340.0000.0000.0000.000
19A45TYR0-0.039-0.01417.4030.0730.0730.0000.0000.0000.000
20A46LEU0-0.033-0.02015.4580.0690.0690.0000.0000.0000.000
21A47LEU00.008-0.00411.0270.6690.6690.0000.0000.0000.000
22A48PRO00.0320.02311.2421.3741.3740.0000.0000.0000.000
23A49GLN0-0.030-0.02012.331-0.330-0.3300.0000.0000.0000.000
24A50PHE00.0360.0157.3200.3790.3790.0000.0000.0000.000
25A51GLU-1-0.756-0.8486.57427.48927.4890.0000.0000.0000.000
26A52LYS10.8920.9488.510-17.221-17.2210.0000.0000.0000.000
27A53ASP-1-0.783-0.84111.21218.18218.1820.0000.0000.0000.000
28A54THR0-0.074-0.0506.8521.2361.2360.0000.0000.0000.000
29A55GLY0-0.022-0.0025.4532.6092.6090.0000.0000.0000.000
30A56TYR0-0.085-0.0451.709-30.122-32.86618.368-7.856-7.7680.069
31A57LYS10.8200.9013.743-34.432-33.8430.000-0.182-0.4090.000
32A58VAL0-0.023-0.0295.5284.5044.5040.0000.0000.0000.000
33A59ASP-1-0.871-0.9218.43129.77929.7790.0000.0000.0000.000
34A60VAL0-0.007-0.01910.804-0.136-0.1360.0000.0000.0000.000
35A61ILE0-0.011-0.00412.919-1.115-1.1150.0000.0000.0000.000
36A62ALA00.0130.00816.890-0.293-0.2930.0000.0000.0000.000
37A63ALA0-0.016-0.00720.263-0.648-0.6480.0000.0000.0000.000
38A64GLY00.0530.02623.141-0.210-0.2100.0000.0000.0000.000
39A65THR00.048-0.00324.2640.4560.4560.0000.0000.0000.000
40A66GLY00.0200.02224.1070.3940.3940.0000.0000.0000.000
41A67LYS10.9260.96521.612-13.366-13.3660.0000.0000.0000.000
42A68ALA00.0400.01720.0390.5710.5710.0000.0000.0000.000
43A69LEU00.0360.00819.5100.7520.7520.0000.0000.0000.000
44A70LYS10.8190.91621.065-13.158-13.1580.0000.0000.0000.000
45A71MET0-0.0040.00117.0710.1680.1680.0000.0000.0000.000
46A72GLY00.0270.00816.6101.0981.0980.0000.0000.0000.000
47A73GLU-1-0.842-0.89317.69513.64513.6450.0000.0000.0000.000
48A74ASN0-0.074-0.04218.740-0.806-0.8060.0000.0000.0000.000
49A75GLY00.0470.04714.9860.0620.0620.0000.0000.0000.000
50A76ASP-1-0.823-0.90913.55919.62119.6210.0000.0000.0000.000
51A77VAL0-0.100-0.04411.8611.3031.3030.0000.0000.0000.000
52A78ASP-1-0.712-0.8397.62140.95240.9520.0000.0000.0000.000
53A79LEU0-0.056-0.02110.468-0.984-0.9840.0000.0000.0000.000
54A80VAL0-0.0140.00513.267-0.271-0.2710.0000.0000.0000.000
55A81MET00.0180.01015.866-0.255-0.2550.0000.0000.0000.000
56A82THR0-0.061-0.04018.753-0.313-0.3130.0000.0000.0000.000
57A83HIS00.0600.04622.5470.2120.2120.0000.0000.0000.000
58A84ALA0-0.024-0.01526.040-0.584-0.5840.0000.0000.0000.000
59A85PRO00.0240.00427.6160.1240.1240.0000.0000.0000.000
60A86LYS10.8550.91728.597-9.344-9.3440.0000.0000.0000.000
61A87ALA00.0200.01327.263-0.036-0.0360.0000.0000.0000.000
62A88GLU-1-0.720-0.84423.39513.41913.4190.0000.0000.0000.000
63A89GLY00.0330.01724.7760.3570.3570.0000.0000.0000.000
64A90THR0-0.0020.00027.034-0.047-0.0470.0000.0000.0000.000
65A91PHE0-0.023-0.01618.205-0.021-0.0210.0000.0000.0000.000
66A92VAL00.000-0.01021.8100.4970.4970.0000.0000.0000.000
67A93GLU-1-0.916-0.94523.63811.00611.0060.0000.0000.0000.000
68A94LYS10.8570.93425.373-11.871-11.8710.0000.0000.0000.000
69A95GLY00.0560.03822.4900.1730.1730.0000.0000.0000.000
70A96TYR0-0.098-0.08820.6120.3850.3850.0000.0000.0000.000
71A97GLY00.0150.00417.6401.2191.2190.0000.0000.0000.000
72A98VAL0-0.018-0.01015.617-0.983-0.9830.0000.0000.0000.000
73A99LEU0-0.023-0.02014.6310.7810.7810.0000.0000.0000.000
74A100PRO0-0.0060.01417.7620.6090.6090.0000.0000.0000.000
75A101ARG10.8540.90014.821-19.682-19.6820.0000.0000.0000.000
76A102LYS10.7890.89520.809-12.129-12.1290.0000.0000.0000.000
77A103LEU00.0100.01918.091-0.082-0.0820.0000.0000.0000.000
78A104MET00.0340.03621.932-0.361-0.3610.0000.0000.0000.000
79A105TYR00.000-0.00325.437-0.008-0.0080.0000.0000.0000.000
80A106ASN0-0.006-0.00126.020-0.316-0.3160.0000.0000.0000.000
81A107ASP-1-0.794-0.86729.9788.8558.8550.0000.0000.0000.000
82A108PHE00.009-0.00331.1390.0370.0370.0000.0000.0000.000
83A109VAL0-0.029-0.01036.361-0.111-0.1110.0000.0000.0000.000
84A110ILE0-0.0010.01040.1540.0820.0820.0000.0000.0000.000
85A111VAL00.0060.00242.586-0.131-0.1310.0000.0000.0000.000
86A112GLY00.0710.02145.0020.0470.0470.0000.0000.0000.000
87A113PRO00.0400.03448.230-0.022-0.0220.0000.0000.0000.000
88A114LYS10.8740.92351.925-5.944-5.9440.0000.0000.0000.000
89A115ALA0-0.009-0.00353.548-0.040-0.0400.0000.0000.0000.000
90A116ASP-1-0.741-0.85451.8796.1856.1850.0000.0000.0000.000
91A117PRO0-0.009-0.00353.175-0.075-0.0750.0000.0000.0000.000
92A118ALA00.0160.00451.221-0.078-0.0780.0000.0000.0000.000
93A119LYS10.7640.88653.317-5.709-5.7090.0000.0000.0000.000
94A120ILE00.0620.02447.2370.0180.0180.0000.0000.0000.000
95A121LYS10.7710.89049.235-6.235-6.2350.0000.0000.0000.000
96A122ASP-1-0.949-0.97149.7946.2026.2020.0000.0000.0000.000
97A123ASP-1-0.870-0.93247.8766.5816.5810.0000.0000.0000.000
98A124GLU-1-0.959-0.98747.4556.7286.7280.0000.0000.0000.000
99A125SER0-0.104-0.08242.4940.2730.2730.0000.0000.0000.000
100A126VAL00.018-0.00238.441-0.098-0.0980.0000.0000.0000.000
101A127LEU0-0.036-0.02238.488-0.003-0.0030.0000.0000.0000.000
102A128ASP-1-0.808-0.85542.3377.0657.0650.0000.0000.0000.000
103A129VAL00.0820.05144.214-0.083-0.0830.0000.0000.0000.000
104A130PHE0-0.049-0.03738.971-0.036-0.0360.0000.0000.0000.000
105A131LYS10.8280.88744.168-7.278-7.2780.0000.0000.0000.000
106A132GLU-1-0.777-0.86746.7386.0866.0860.0000.0000.0000.000
107A133ILE0-0.038-0.02045.356-0.138-0.1380.0000.0000.0000.000
108A134ALA0-0.0150.00446.391-0.104-0.1040.0000.0000.0000.000
109A135ASN0-0.061-0.03748.476-0.089-0.0890.0000.0000.0000.000
110A136LYS10.7670.87651.705-6.191-6.1910.0000.0000.0000.000
111A137ASN0-0.031-0.01750.9840.0230.0230.0000.0000.0000.000
112A138ALA00.0180.02250.251-0.065-0.0650.0000.0000.0000.000
113A139THR0-0.011-0.01048.3750.1030.1030.0000.0000.0000.000
114A140PHE0-0.022-0.00840.6330.0390.0390.0000.0000.0000.000
115A141ILE0-0.0080.01042.2480.0310.0310.0000.0000.0000.000
116A142SER0-0.056-0.05337.9730.1700.1700.0000.0000.0000.000
117A143ARG10.8370.87831.968-9.542-9.5420.0000.0000.0000.000
118A144GLY00.0190.00836.207-0.078-0.0780.0000.0000.0000.000
119A145ASP-1-0.750-0.84832.8549.4369.4360.0000.0000.0000.000
120A146ASP-1-0.857-0.90728.41510.41110.4110.0000.0000.0000.000
121A147SER0-0.030-0.03428.1900.4780.4780.0000.0000.0000.000
122A148GLY00.0470.01427.842-0.060-0.0600.0000.0000.0000.000
123A149THR0-0.008-0.01428.3830.0010.0010.0000.0000.0000.000
124A150HIS00.0420.03831.9720.0290.0290.0000.0000.0000.000
125A151LYS10.8640.92026.397-11.181-11.1810.0000.0000.0000.000
126A152LYS10.8090.91230.556-10.049-10.0490.0000.0000.0000.000
127A153GLU-1-0.729-0.82232.1808.1488.1480.0000.0000.0000.000
128A154MET00.0140.00732.911-0.235-0.2350.0000.0000.0000.000
129A155GLY00.0150.01433.004-0.083-0.0830.0000.0000.0000.000
130A156PHE0-0.049-0.02933.728-0.026-0.0260.0000.0000.0000.000
131A157TRP00.0450.01837.197-0.197-0.1970.0000.0000.0000.000
132A158ALA00.0470.02935.107-0.159-0.1590.0000.0000.0000.000
133A159GLN0-0.101-0.07034.702-0.140-0.1400.0000.0000.0000.000
134A160THR0-0.049-0.03238.173-0.187-0.1870.0000.0000.0000.000
135A161LYS10.8070.91238.604-8.476-8.4760.0000.0000.0000.000
136A162ILE00.0060.02241.873-0.118-0.1180.0000.0000.0000.000
137A163GLU-1-0.856-0.91940.1807.8217.8210.0000.0000.0000.000
138A164PRO0-0.030-0.00839.552-0.209-0.2090.0000.0000.0000.000
139A165ASN0-0.053-0.04842.7980.0070.0070.0000.0000.0000.000
140A166PHE0-0.0080.01044.438-0.153-0.1530.0000.0000.0000.000
141A167GLY00.0290.00547.7600.0740.0740.0000.0000.0000.000
142A168GLY00.0020.01249.537-0.035-0.0350.0000.0000.0000.000
143A169TYR0-0.072-0.04539.0700.0910.0910.0000.0000.0000.000
144A170ARG10.9140.93544.323-6.604-6.6040.0000.0000.0000.000
145A171SER00.0390.01938.9000.1640.1640.0000.0000.0000.000
146A172VAL0-0.042-0.02040.154-0.118-0.1180.0000.0000.0000.000
147A173GLY00.0070.02436.619-0.077-0.0770.0000.0000.0000.000
148A174GLN0-0.087-0.04836.9030.0670.0670.0000.0000.0000.000
149A175GLY00.0680.03134.7090.1610.1610.0000.0000.0000.000
150A176MET00.0060.02235.185-0.177-0.1770.0000.0000.0000.000
151A177GLY00.0420.01236.993-0.194-0.1940.0000.0000.0000.000
152A178PRO00.002-0.01938.479-0.200-0.2000.0000.0000.0000.000
153A179THR0-0.006-0.00338.603-0.196-0.1960.0000.0000.0000.000
154A180LEU00.0060.00440.222-0.171-0.1710.0000.0000.0000.000
155A181ASN00.022-0.00243.088-0.177-0.1770.0000.0000.0000.000
156A182MET00.0000.00844.329-0.229-0.2290.0000.0000.0000.000
157A183ALA00.007-0.00144.854-0.132-0.1320.0000.0000.0000.000
158A184SER00.0010.00346.782-0.105-0.1050.0000.0000.0000.000
159A185GLU-1-0.931-0.95549.3575.8915.8910.0000.0000.0000.000
160A186MET0-0.061-0.02449.290-0.065-0.0650.0000.0000.0000.000
161A187GLN0-0.069-0.04151.279-0.081-0.0810.0000.0000.0000.000
162A188GLY0-0.013-0.01248.828-0.070-0.0700.0000.0000.0000.000
163A189TYR0-0.027-0.06045.8300.0130.0130.0000.0000.0000.000
164A190THR0-0.019-0.02241.0950.1260.1260.0000.0000.0000.000
165A191MET0-0.035-0.01034.822-0.045-0.0450.0000.0000.0000.000
166A192SER00.008-0.01937.7490.1490.1490.0000.0000.0000.000
167A193ASP-1-0.788-0.86133.6149.1369.1360.0000.0000.0000.000
168A194ARG10.8320.86735.519-8.584-8.5840.0000.0000.0000.000
169A195GLY00.0090.01135.163-0.197-0.1970.0000.0000.0000.000
170A196THR0-0.023-0.06235.331-0.188-0.1880.0000.0000.0000.000
171A197TRP00.0140.00937.527-0.205-0.2050.0000.0000.0000.000
172A198LEU0-0.022-0.00738.662-0.209-0.2090.0000.0000.0000.000
173A199ALA0-0.034-0.00738.844-0.173-0.1730.0000.0000.0000.000
174A200TYR0-0.058-0.04239.452-0.127-0.1270.0000.0000.0000.000
175A201GLN00.0480.02343.343-0.053-0.0530.0000.0000.0000.000
176A202ASN0-0.049-0.02646.022-0.038-0.0380.0000.0000.0000.000
177A203LYS10.8500.94743.040-7.296-7.2960.0000.0000.0000.000
178A204LEU0-0.0070.00644.1820.0640.0640.0000.0000.0000.000
179A205ASP-1-0.855-0.90748.9045.9965.9960.0000.0000.0000.000
180A206LEU0-0.070-0.04146.522-0.020-0.0200.0000.0000.0000.000
181A207GLU-1-0.826-0.89548.5296.1706.1700.0000.0000.0000.000
182A208ILE0-0.004-0.00343.2330.0950.0950.0000.0000.0000.000
183A209LEU0-0.081-0.03446.050-0.149-0.1490.0000.0000.0000.000
184A210PHE00.0970.04441.9300.0220.0220.0000.0000.0000.000
185A211GLN00.0390.01041.2350.3130.3130.0000.0000.0000.000
186A212GLY00.0000.02341.2440.1400.1400.0000.0000.0000.000
187A213ASP-1-0.685-0.83938.9228.3238.3230.0000.0000.0000.000
188A214GLU-1-0.796-0.88135.4079.3749.3740.0000.0000.0000.000
189A215LYS10.8030.88734.469-8.151-8.1510.0000.0000.0000.000
190A216LEU0-0.0090.00434.3910.2550.2550.0000.0000.0000.000
191A217PHE00.0220.01333.5270.1470.1470.0000.0000.0000.000
192A218ASN0-0.036-0.02428.9880.1460.1460.0000.0000.0000.000
193A219PRO00.0110.00328.3170.3070.3070.0000.0000.0000.000
194A220TYR00.0530.02622.670-0.092-0.0920.0000.0000.0000.000
195A221GLN0-0.070-0.06021.268-0.111-0.1110.0000.0000.0000.000
196A222VAL00.0190.02714.9240.2770.2770.0000.0000.0000.000
197A223ILE0-0.027-0.02417.069-0.758-0.7580.0000.0000.0000.000
198A224LEU00.0180.01911.5010.7240.7240.0000.0000.0000.000
199A225VAL00.0210.01813.151-1.959-1.9590.0000.0000.0000.000
200A226ASN0-0.043-0.04413.6872.0922.0920.0000.0000.0000.000
201A227PRO0-0.005-0.00212.000-0.142-0.1420.0000.0000.0000.000
202A228GLU-1-0.926-0.94813.96315.28715.2870.0000.0000.0000.000
203A229ARG10.8310.92817.504-16.408-16.4080.0000.0000.0000.000
204A230TYR0-0.042-0.04214.020-0.621-0.6210.0000.0000.0000.000
205A231PRO00.0240.00512.7392.1252.1250.0000.0000.0000.000
206A232THR0-0.024-0.00710.8641.4161.4160.0000.0000.0000.000
207A233ILE0-0.0300.0079.1293.0553.0550.0000.0000.0000.000
208A234ASN00.004-0.0141.806-25.707-29.25712.926-5.160-4.2160.069
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210A236GLN0-0.031-0.0063.750-11.710-11.1890.003-0.229-0.2950.001
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