FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 94LV2

Calculation Name: 1CUN-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1CUN

Chain ID: A

ChEMBL ID:

UniProt ID: P07751

Base Structure: X-ray

Registration Date: 2023-06-22

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 213
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2102330.099317
FMO2-HF: Nuclear repulsion 2017076.901589
FMO2-HF: Total energy -85253.197727
FMO2-MP2: Total energy -85503.406049


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:7:MET)


Summations of interaction energy for fragment #1(A:7:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-13.2-5.9832.415-2.759-6.8720.007
Interaction energy analysis for fragmet #1(A:7:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.017 / q_NPA : -0.006
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A9HIS0-0.002-0.0043.057-4.949-2.2240.298-1.208-1.8150.008
4A10GLN0-0.027-0.0092.546-4.411-2.8040.515-0.694-1.4290.001
5A11PHE00.0170.0184.003-1.123-0.3900.007-0.215-0.5240.000
6A12PHE00.0530.0035.819-0.427-0.4270.0000.0000.0000.000
7A13ARG10.8840.9454.815-2.124-2.1240.0000.0000.0000.000
8A14ASP-1-0.806-0.8977.5850.2340.2340.0000.0000.0000.000
9A15MET0-0.057-0.0199.809-0.178-0.1780.0000.0000.0000.000
10A16ASP-1-0.854-0.91711.6850.6520.6520.0000.0000.0000.000
11A17ASP-1-0.932-0.96312.4560.4040.4040.0000.0000.0000.000
12A18GLU-1-0.865-0.94413.5960.0440.0440.0000.0000.0000.000
13A19GLU-1-0.834-0.93715.7950.2800.2800.0000.0000.0000.000
14A20SER0-0.038-0.00917.371-0.037-0.0370.0000.0000.0000.000
15A21TRP0-0.039-0.02118.629-0.039-0.0390.0000.0000.0000.000
16A22ILE00.005-0.00418.227-0.028-0.0280.0000.0000.0000.000
17A23LYS10.9440.97921.787-0.197-0.1970.0000.0000.0000.000
18A24GLU-1-0.949-0.98023.3560.1280.1280.0000.0000.0000.000
19A25LYS10.8560.92524.187-0.096-0.0960.0000.0000.0000.000
20A26LYS10.9600.99625.888-0.110-0.1100.0000.0000.0000.000
21A27LEU0-0.051-0.00127.649-0.008-0.0080.0000.0000.0000.000
22A28LEU0-0.028-0.00828.829-0.009-0.0090.0000.0000.0000.000
23A29VAL0-0.067-0.01129.054-0.008-0.0080.0000.0000.0000.000
24A30SER0-0.027-0.04131.408-0.004-0.0040.0000.0000.0000.000
25A31SER0-0.056-0.00933.751-0.002-0.0020.0000.0000.0000.000
26A32GLU-1-0.901-0.95836.6310.0370.0370.0000.0000.0000.000
27A33ASP-1-0.928-0.95539.6550.0280.0280.0000.0000.0000.000
28A34TYR00.030-0.01438.471-0.002-0.0020.0000.0000.0000.000
29A35GLY00.0280.01442.779-0.003-0.0030.0000.0000.0000.000
30A36ARG10.9170.94445.336-0.028-0.0280.0000.0000.0000.000
31A37ASP-1-0.830-0.90448.6050.0140.0140.0000.0000.0000.000
32A38LEU00.0820.03047.9650.0000.0000.0000.0000.0000.000
33A39THR00.0350.02347.243-0.001-0.0010.0000.0000.0000.000
34A40GLY00.0050.00845.8780.0000.0000.0000.0000.0000.000
35A41VAL0-0.003-0.00742.9650.0010.0010.0000.0000.0000.000
36A42GLN00.0130.00042.3080.0000.0000.0000.0000.0000.000
37A43ASN0-0.044-0.02441.770-0.003-0.0030.0000.0000.0000.000
38A44LEU0-0.039-0.01339.3640.0010.0010.0000.0000.0000.000
39A45ARG10.9620.99237.7240.0060.0060.0000.0000.0000.000
40A46LYS10.9170.96436.7720.0010.0010.0000.0000.0000.000
41A47LYS10.9310.95034.587-0.040-0.0400.0000.0000.0000.000
42A48HIS00.0130.01632.0550.0060.0060.0000.0000.0000.000
43A49LYS10.9940.99132.0530.0130.0130.0000.0000.0000.000
44A50ARG10.8930.95931.285-0.017-0.0170.0000.0000.0000.000
45A51LEU00.0230.02728.1560.0000.0000.0000.0000.0000.000
46A52GLU-1-0.883-0.96027.420-0.010-0.0100.0000.0000.0000.000
47A53ALA0-0.022-0.00526.538-0.007-0.0070.0000.0000.0000.000
48A54GLU-1-0.849-0.92424.1490.0460.0460.0000.0000.0000.000
49A55LEU0-0.025-0.03622.9590.0030.0030.0000.0000.0000.000
50A56ALA00.0410.02321.555-0.006-0.0060.0000.0000.0000.000
51A57ALA0-0.043-0.02021.210-0.017-0.0170.0000.0000.0000.000
52A58HIS10.8400.91017.996-0.074-0.0740.0000.0000.0000.000
53A59GLU-1-0.923-0.94716.910-0.076-0.0760.0000.0000.0000.000
54A60PRO0-0.020-0.00515.229-0.022-0.0220.0000.0000.0000.000
55A61ALA00.0430.02212.852-0.057-0.0570.0000.0000.0000.000
56A62ILE00.0120.00312.0390.0130.0130.0000.0000.0000.000
57A63GLN0-0.039-0.05811.9490.0640.0640.0000.0000.0000.000
58A64SER0-0.0040.0068.740-0.124-0.1240.0000.0000.0000.000
59A65VAL00.0230.0257.387-0.212-0.2120.0000.0000.0000.000
60A66LEU0-0.017-0.0057.983-0.022-0.0220.0000.0000.0000.000
61A67ASP-1-0.863-0.9117.845-0.665-0.6650.0000.0000.0000.000
62A68THR0-0.076-0.0422.398-1.319-0.6290.548-0.203-1.035-0.003
63A69GLY00.0350.0004.331-0.344-0.244-0.001-0.019-0.0800.000
64A70LYS10.8990.9546.9190.7700.7700.0000.0000.0000.000
65A71LYS10.9270.9703.0002.7333.4680.133-0.179-0.6880.001
66A72LEU00.0200.0183.234-0.711-0.0840.915-0.241-1.3010.000
67A73SER00.0360.0215.6480.2740.2740.0000.0000.0000.000
68A74ASP-1-0.932-0.9808.711-0.490-0.4900.0000.0000.0000.000
69A75ASP-1-0.928-0.9565.224-1.802-1.8020.0000.0000.0000.000
70A76ASN0-0.118-0.0678.2820.1900.1900.0000.0000.0000.000
71A77THR00.0200.0196.3710.0830.0830.0000.0000.0000.000
72A78ILE00.005-0.0078.9370.0260.0260.0000.0000.0000.000
73A79GLY00.0520.0249.8880.1720.1720.0000.0000.0000.000
74A80LYS10.8600.93511.3260.1700.1700.0000.0000.0000.000
75A81GLU-1-0.895-0.94812.3170.1090.1090.0000.0000.0000.000
76A82GLU-1-0.929-0.95712.6650.8010.8010.0000.0000.0000.000
77A83ILE0-0.014-0.0127.9120.0080.0080.0000.0000.0000.000
78A84GLN0-0.033-0.03511.751-0.040-0.0400.0000.0000.0000.000
79A85GLN0-0.016-0.00613.655-0.003-0.0030.0000.0000.0000.000
80A86ARG10.8680.93313.032-0.612-0.6120.0000.0000.0000.000
81A87LEU00.0180.0169.440-0.041-0.0410.0000.0000.0000.000
82A88ALA0-0.024-0.00713.438-0.045-0.0450.0000.0000.0000.000
83A89GLN0-0.0040.00616.9770.0130.0130.0000.0000.0000.000
84A90PHE00.0180.01412.794-0.016-0.0160.0000.0000.0000.000
85A91VAL0-0.041-0.03415.008-0.035-0.0350.0000.0000.0000.000
86A92ASP-1-0.972-0.97817.4120.0570.0570.0000.0000.0000.000
87A93HIS00.0330.01319.342-0.020-0.0200.0000.0000.0000.000
88A94TRP00.0090.00418.248-0.007-0.0070.0000.0000.0000.000
89A95LYS10.8760.92420.2490.0270.0270.0000.0000.0000.000
90A96GLU-1-0.881-0.94022.6980.0800.0800.0000.0000.0000.000
91A97LEU00.0050.01022.557-0.005-0.0050.0000.0000.0000.000
92A98LYS10.9230.95820.8620.0390.0390.0000.0000.0000.000
93A99GLN0-0.0090.00725.584-0.007-0.0070.0000.0000.0000.000
94A100LEU00.0240.01528.335-0.002-0.0020.0000.0000.0000.000
95A101ALA0-0.014-0.03128.185-0.002-0.0020.0000.0000.0000.000
96A102ALA00.0190.00729.671-0.003-0.0030.0000.0000.0000.000
97A103ALA00.0170.01331.373-0.002-0.0020.0000.0000.0000.000
98A104ARG10.8500.92733.447-0.031-0.0310.0000.0000.0000.000
99A105GLY00.008-0.00133.898-0.001-0.0010.0000.0000.0000.000
100A106GLN00.0760.04035.336-0.002-0.0020.0000.0000.0000.000
101A107ARG10.8650.93537.612-0.015-0.0150.0000.0000.0000.000
102A108LEU0-0.006-0.01836.8170.0010.0010.0000.0000.0000.000
103A109GLU-1-0.916-0.95337.867-0.011-0.0110.0000.0000.0000.000
104A110GLU-1-0.790-0.86241.4530.0080.0080.0000.0000.0000.000
105A111SER0-0.102-0.06443.2140.0000.0000.0000.0000.0000.000
106A112LEU00.001-0.00443.4000.0000.0000.0000.0000.0000.000
107A113GLU-1-0.907-0.94945.430-0.006-0.0060.0000.0000.0000.000
108A114TYR00.000-0.00147.6820.0000.0000.0000.0000.0000.000
109A115GLN00.029-0.00248.197-0.001-0.0010.0000.0000.0000.000
110A116GLN0-0.0160.00348.061-0.001-0.0010.0000.0000.0000.000
111A117PHE0-0.0100.01551.4270.0000.0000.0000.0000.0000.000
112A118VAL0-0.048-0.02753.1730.0000.0000.0000.0000.0000.000
113A119ALA0-0.005-0.00853.6600.0000.0000.0000.0000.0000.000
114A120ASN00.0480.01154.3130.0000.0000.0000.0000.0000.000
115A121VAL0-0.041-0.02057.3460.0000.0000.0000.0000.0000.000
116A122GLU-1-0.932-0.95758.8380.0070.0070.0000.0000.0000.000
117A123GLU-1-0.965-0.97857.327-0.001-0.0010.0000.0000.0000.000
118A124GLU-1-0.859-0.92561.266-0.002-0.0020.0000.0000.0000.000
119A125GLU-1-0.938-0.98863.3740.0050.0050.0000.0000.0000.000
120A126ALA0-0.0100.01064.2840.0000.0000.0000.0000.0000.000
121A127TRP00.0490.02265.7030.0000.0000.0000.0000.0000.000
122A128ILE0-0.001-0.01567.3460.0000.0000.0000.0000.0000.000
123A129ASN0-0.012-0.01767.5630.0000.0000.0000.0000.0000.000
124A130GLU-1-0.962-0.97668.9330.0010.0010.0000.0000.0000.000
125A131LYS10.9240.96071.5980.0000.0000.0000.0000.0000.000
126A132MET0-0.0110.01073.5300.0000.0000.0000.0000.0000.000
127A133THR0-0.030-0.00474.8220.0000.0000.0000.0000.0000.000
128A134LEU0-0.039-0.02476.2660.0000.0000.0000.0000.0000.000
129A135VAL0-0.025-0.02077.7090.0000.0000.0000.0000.0000.000
130A136ALA0-0.049-0.01079.6650.0000.0000.0000.0000.0000.000
131A137SER0-0.039-0.00281.5160.0000.0000.0000.0000.0000.000
132A138GLU-1-0.911-0.98083.6740.0020.0020.0000.0000.0000.000
133A139ASP-1-0.909-0.93786.7590.0010.0010.0000.0000.0000.000
134A140TYR0-0.041-0.04586.3520.0000.0000.0000.0000.0000.000
135A141GLY00.010-0.00189.9470.0000.0000.0000.0000.0000.000
136A142ASP-1-0.893-0.93991.7760.0000.0000.0000.0000.0000.000
137A143THR0-0.010-0.00394.6210.0000.0000.0000.0000.0000.000
138A144LEU00.0820.02094.6030.0000.0000.0000.0000.0000.000
139A145ALA0-0.026-0.01493.9990.0000.0000.0000.0000.0000.000
140A146ALA00.0030.00091.2870.0000.0000.0000.0000.0000.000
141A147ILE00.0280.02789.7880.0000.0000.0000.0000.0000.000
142A148GLN00.0050.00789.0630.0000.0000.0000.0000.0000.000
143A149GLY0-0.008-0.00387.0500.0000.0000.0000.0000.0000.000
144A150LEU0-0.009-0.01185.1310.0000.0000.0000.0000.0000.000
145A151LEU00.0310.01284.2490.0000.0000.0000.0000.0000.000
146A152LYS10.8750.95083.5530.0030.0030.0000.0000.0000.000
147A153LYS10.9560.98280.7400.0010.0010.0000.0000.0000.000
148A154HIS0-0.062-0.03479.5790.0000.0000.0000.0000.0000.000
149A155GLU-1-0.952-0.97679.309-0.005-0.0050.0000.0000.0000.000
150A156ALA0-0.015-0.01576.9270.0000.0000.0000.0000.0000.000
151A157PHE00.0170.00473.8180.0000.0000.0000.0000.0000.000
152A158GLU-1-0.816-0.90674.477-0.002-0.0020.0000.0000.0000.000
153A159THR0-0.055-0.01472.9300.0000.0000.0000.0000.0000.000
154A160ASP-1-0.900-0.95270.870-0.005-0.0050.0000.0000.0000.000
155A161PHE0-0.054-0.04569.9210.0000.0000.0000.0000.0000.000
156A162THR0-0.019-0.01670.2240.0000.0000.0000.0000.0000.000
157A163VAL00.0000.00865.7820.0000.0000.0000.0000.0000.000
158A164HIS10.8100.87765.2730.0020.0020.0000.0000.0000.000
159A165LYS10.8860.96465.8760.0030.0030.0000.0000.0000.000
160A166ASP-1-0.938-0.95963.841-0.008-0.0080.0000.0000.0000.000
161A167ARG11.0031.00361.6120.0060.0060.0000.0000.0000.000
162A168VAL00.0070.00661.3040.0000.0000.0000.0000.0000.000
163A169ASN0-0.038-0.02662.1470.0010.0010.0000.0000.0000.000
164A170ASP-1-0.861-0.91658.270-0.008-0.0080.0000.0000.0000.000
165A171VAL0-0.062-0.03157.5210.0000.0000.0000.0000.0000.000
166A172CYS0-0.086-0.06357.6060.0010.0010.0000.0000.0000.000
167A173ALA00.0710.04857.6490.0010.0010.0000.0000.0000.000
168A174ASN00.0330.01452.308-0.001-0.0010.0000.0000.0000.000
169A175GLY0-0.010-0.01653.5990.0010.0010.0000.0000.0000.000
170A176GLU-1-0.972-0.99954.745-0.002-0.0020.0000.0000.0000.000
171A177ASP-1-0.893-0.94351.450-0.007-0.0070.0000.0000.0000.000
172A178LEU0-0.081-0.05049.0000.0010.0010.0000.0000.0000.000
173A179ILE0-0.033-0.02150.2490.0010.0010.0000.0000.0000.000
174A180LYS10.9490.98751.1190.0090.0090.0000.0000.0000.000
175A181LYS10.8360.93445.717-0.003-0.0030.0000.0000.0000.000
176A182ASN0-0.067-0.03144.9400.0010.0010.0000.0000.0000.000
177A183ASN00.061-0.00748.4080.0000.0000.0000.0000.0000.000
178A184HIS10.7960.87643.791-0.012-0.0120.0000.0000.0000.000
179A185HIS00.0490.02148.304-0.001-0.0010.0000.0000.0000.000
180A186VAL00.0630.07652.472-0.001-0.0010.0000.0000.0000.000
181A187GLU-1-0.889-0.94454.6850.0130.0130.0000.0000.0000.000
182A188ASN0-0.028-0.02755.169-0.001-0.0010.0000.0000.0000.000
183A189ILE00.0080.00552.196-0.001-0.0010.0000.0000.0000.000
184A190THR00.010-0.00256.840-0.001-0.0010.0000.0000.0000.000
185A191ALA0-0.037-0.01859.773-0.001-0.0010.0000.0000.0000.000
186A192LYS10.9520.97857.213-0.009-0.0090.0000.0000.0000.000
187A193MET00.0120.04158.578-0.001-0.0010.0000.0000.0000.000
188A194LYS10.9290.96461.942-0.006-0.0060.0000.0000.0000.000
189A195GLY0-0.014-0.00864.5620.0000.0000.0000.0000.0000.000
190A196LEU00.0800.04161.8550.0000.0000.0000.0000.0000.000
191A197LYS10.9540.96263.8590.0000.0000.0000.0000.0000.000
192A198GLY0-0.020-0.00467.5310.0000.0000.0000.0000.0000.000
193A199LYS10.9610.99167.439-0.005-0.0050.0000.0000.0000.000
194A200VAL00.0170.01567.8190.0000.0000.0000.0000.0000.000
195A201SER00.005-0.00270.6820.0000.0000.0000.0000.0000.000
196A202ASP-1-0.949-0.97173.3740.0030.0030.0000.0000.0000.000
197A203LEU0-0.009-0.01672.2910.0000.0000.0000.0000.0000.000
198A204GLU-1-0.922-0.96873.647-0.002-0.0020.0000.0000.0000.000
199A205LYS10.9200.97276.510-0.003-0.0030.0000.0000.0000.000
200A206ALA0-0.033-0.02078.2030.0000.0000.0000.0000.0000.000
201A207ALA00.0240.00377.9260.0000.0000.0000.0000.0000.000
202A208ALA00.0240.01679.9490.0000.0000.0000.0000.0000.000
203A209GLN0-0.044-0.03482.3620.0000.0000.0000.0000.0000.000
204A210ARG10.9030.97282.1880.0000.0000.0000.0000.0000.000
205A211LYS10.8530.91183.4520.0020.0020.0000.0000.0000.000
206A212ALA00.0180.00885.3220.0000.0000.0000.0000.0000.000
207A213LYS10.9490.98287.964-0.001-0.0010.0000.0000.0000.000
208A214LEU0-0.018-0.00285.4490.0000.0000.0000.0000.0000.000
209A215ASP-1-0.817-0.90088.594-0.002-0.0020.0000.0000.0000.000
210A216GLU-1-0.981-0.99791.2540.0000.0000.0000.0000.0000.000
211A217ASN0-0.053-0.03292.6760.0000.0000.0000.0000.0000.000
212A218SER0-0.086-0.02793.1500.0000.0000.0000.0000.0000.000
213A219ALA0-0.028-0.00695.0440.0000.0000.0000.0000.0000.000