Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: 94QM2

Calculation Name: 1UAN-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1UAN

Chain ID: A

ChEMBL ID:

UniProt ID: Q84BR2

Base Structure: X-ray

Registration Date: 2023-06-26

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 220
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2610393.290526
FMO2-HF: Nuclear repulsion 2526882.155842
FMO2-HF: Total energy -83511.134684
FMO2-MP2: Total energy -83759.05377


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:MET)


Summations of interaction energy for fragment #1(A:1:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-22.059-12.23111.15-8.331-12.646-0.06
Interaction energy analysis for fragmet #1(A:1:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.077 / q_NPA : -0.027
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3ASP-1-0.769-0.8722.562-11.273-7.7132.659-2.277-3.943-0.021
4A4LEU0-0.035-0.0223.9450.8440.9740.0080.012-0.1510.000
5A5LEU00.0060.0107.171-0.076-0.0760.0000.0000.0000.000
6A6VAL0-0.004-0.0019.3540.2010.2010.0000.0000.0000.000
7A7VAL0-0.002-0.00611.929-0.004-0.0040.0000.0000.0000.000
8A8ALA00.0320.02214.0590.0750.0750.0000.0000.0000.000
9A9PRO0-0.016-0.00117.3760.0130.0130.0000.0000.0000.000
10A10HIS00.0290.00220.4590.0360.0360.0000.0000.0000.000
11A11PRO0-0.0090.00819.914-0.027-0.0270.0000.0000.0000.000
12A12ASP-1-0.744-0.85320.827-0.256-0.2560.0000.0000.0000.000
13A13ASP-1-0.801-0.86921.672-0.374-0.3740.0000.0000.0000.000
14A14GLY00.0530.01817.826-0.009-0.0090.0000.0000.0000.000
15A15GLU-1-0.726-0.82718.290-0.549-0.5490.0000.0000.0000.000
16A16LEU0-0.010-0.00919.7370.0150.0150.0000.0000.0000.000
17A17GLY0-0.041-0.00820.6470.0300.0300.0000.0000.0000.000
18A18CYS0-0.028-0.00615.578-0.002-0.0020.0000.0000.0000.000
19A19GLY00.0570.02316.212-0.064-0.0640.0000.0000.0000.000
20A20GLY0-0.007-0.00817.002-0.015-0.0150.0000.0000.0000.000
21A21THR0-0.035-0.05613.3140.0080.0080.0000.0000.0000.000
22A22LEU0-0.017-0.00511.263-0.090-0.0900.0000.0000.0000.000
23A23ALA00.0110.01012.499-0.054-0.0540.0000.0000.0000.000
24A24ARG10.7500.85113.9250.5060.5060.0000.0000.0000.000
25A25ALA00.0060.0019.0870.0080.0080.0000.0000.0000.000
26A26LYS10.8250.9109.3540.7820.7820.0000.0000.0000.000
27A27ALA0-0.043-0.01511.2530.0840.0840.0000.0000.0000.000
28A28GLU-1-0.924-0.95811.294-0.574-0.5740.0000.0000.0000.000
29A29GLY0-0.027-0.0049.9060.0230.0230.0000.0000.0000.000
30A30LEU0-0.057-0.0185.696-0.026-0.0260.0000.0000.0000.000
31A31SER0-0.044-0.0383.7590.1270.3810.004-0.036-0.2210.000
32A32THR0-0.004-0.0205.280-0.824-0.8240.0000.0000.0000.000
33A33GLY00.0440.0068.0200.1180.1180.0000.0000.0000.000
34A34ILE0-0.039-0.01710.4510.0110.0110.0000.0000.0000.000
35A35LEU0-0.012-0.01310.440-0.023-0.0230.0000.0000.0000.000
36A36ASP-1-0.780-0.86212.887-0.523-0.5230.0000.0000.0000.000
37A37LEU0-0.008-0.01915.7060.0290.0290.0000.0000.0000.000
38A38THR0-0.0030.00117.9910.0390.0390.0000.0000.0000.000
39A39ARG10.8310.88719.9560.2270.2270.0000.0000.0000.000
40A40GLY00.0140.02022.813-0.004-0.0040.0000.0000.0000.000
41A41GLU-1-0.831-0.91825.361-0.206-0.2060.0000.0000.0000.000
42A42MET0-0.049-0.00728.2310.0200.0200.0000.0000.0000.000
43A43GLY00.0090.00829.0320.0090.0090.0000.0000.0000.000
44A44SER0-0.078-0.03727.9500.0020.0020.0000.0000.0000.000
45A45LYS10.8730.90930.0200.1920.1920.0000.0000.0000.000
46A46GLY00.0170.02631.256-0.010-0.0100.0000.0000.0000.000
47A47THR0-0.053-0.06131.529-0.001-0.0010.0000.0000.0000.000
48A48PRO00.027-0.00926.998-0.012-0.0120.0000.0000.0000.000
49A49GLU-1-0.805-0.87626.349-0.165-0.1650.0000.0000.0000.000
50A50GLU-1-0.823-0.88227.050-0.156-0.1560.0000.0000.0000.000
51A51ARG10.8240.89124.4260.2590.2590.0000.0000.0000.000
52A52GLU-1-0.816-0.90021.707-0.280-0.2800.0000.0000.0000.000
53A53LYS10.8110.89022.3280.1340.1340.0000.0000.0000.000
54A54GLU-1-0.819-0.87624.146-0.247-0.2470.0000.0000.0000.000
55A55VAL00.0370.02218.568-0.022-0.0220.0000.0000.0000.000
56A56ALA0-0.0200.01319.346-0.053-0.0530.0000.0000.0000.000
57A57GLU-1-0.768-0.84520.076-0.295-0.2950.0000.0000.0000.000
58A58ALA00.0140.00620.895-0.013-0.0130.0000.0000.0000.000
59A59SER0-0.014-0.03916.020-0.066-0.0660.0000.0000.0000.000
60A60ARG10.7840.86316.3670.2310.2310.0000.0000.0000.000
61A61ILE0-0.058-0.02018.083-0.005-0.0050.0000.0000.0000.000
62A62LEU0-0.041-0.02015.1870.0080.0080.0000.0000.0000.000
63A63GLY00.0020.01514.122-0.067-0.0670.0000.0000.0000.000
64A64LEU0-0.066-0.02911.593-0.067-0.0670.0000.0000.0000.000
65A65ASP-1-0.773-0.8548.108-0.845-0.8450.0000.0000.0000.000
66A66PHE0-0.041-0.0277.731-0.014-0.0140.0000.0000.0000.000
67A67ARG10.7470.8189.8740.6130.6130.0000.0000.0000.000
68A68GLY00.0030.00512.4820.0520.0520.0000.0000.0000.000
69A69ASN0-0.047-0.04813.3820.0310.0310.0000.0000.0000.000
70A70LEU0-0.032-0.01413.3110.0090.0090.0000.0000.0000.000
71A71GLY0-0.0240.00517.0310.0440.0440.0000.0000.0000.000
72A72PHE0-0.035-0.02717.4890.0310.0310.0000.0000.0000.000
73A73PRO00.0170.01122.168-0.013-0.0130.0000.0000.0000.000
74A74ASP-1-0.864-0.95525.492-0.228-0.2280.0000.0000.0000.000
75A75GLY00.0110.00226.3180.0170.0170.0000.0000.0000.000
76A76GLY0-0.031-0.01426.7920.0170.0170.0000.0000.0000.000
77A77LEU0-0.057-0.00820.9290.0000.0000.0000.0000.0000.000
78A78ALA00.006-0.02123.5300.0120.0120.0000.0000.0000.000
79A79ASP-1-0.794-0.86721.424-0.157-0.1570.0000.0000.0000.000
80A80VAL00.0020.00123.1710.0220.0220.0000.0000.0000.000
81A81PRO0-0.001-0.02222.390-0.011-0.0110.0000.0000.0000.000
82A82GLU-1-0.847-0.90521.078-0.104-0.1040.0000.0000.0000.000
83A83GLN00.0610.03019.875-0.022-0.0220.0000.0000.0000.000
84A84ARG10.8430.88817.9280.0830.0830.0000.0000.0000.000
85A85LEU0-0.014-0.00516.515-0.012-0.0120.0000.0000.0000.000
86A86LYS10.8900.93415.4770.1430.1430.0000.0000.0000.000
87A87LEU00.0230.02412.395-0.036-0.0360.0000.0000.0000.000
88A88ALA00.0120.00011.843-0.070-0.0700.0000.0000.0000.000
89A89GLN00.006-0.00211.0400.0400.0400.0000.0000.0000.000
90A90ALA0-0.016-0.0049.8360.0680.0680.0000.0000.0000.000
91A91LEU00.0080.0097.354-0.191-0.1910.0000.0000.0000.000
92A92ARG10.8320.9156.257-0.314-0.3140.0000.0000.0000.000
93A93ARG10.8500.9336.0840.8990.8990.0000.0000.0000.000
94A94LEU00.014-0.0043.8250.0500.5790.003-0.168-0.363-0.001
95A95ARG10.9040.9672.152-12.857-10.0164.706-3.838-3.709-0.018
96A96PRO00.0080.0192.655-2.798-0.7471.805-1.577-2.279-0.019
97A97ARG10.8580.8992.6963.4063.8691.965-0.447-1.980-0.001
98A98VAL0-0.019-0.0115.6420.6710.6710.0000.0000.0000.000
99A99VAL00.0230.0088.310-0.262-0.2620.0000.0000.0000.000
100A100PHE0-0.0030.00010.9430.1430.1430.0000.0000.0000.000
101A101ALA00.0500.02314.113-0.037-0.0370.0000.0000.0000.000
102A102PRO00.0260.01916.8140.0270.0270.0000.0000.0000.000
103A103LEU0-0.0050.01220.6330.0110.0110.0000.0000.0000.000
104A104GLU-1-0.792-0.86523.098-0.179-0.1790.0000.0000.0000.000
105A105ALA0-0.0090.00525.0300.0160.0160.0000.0000.0000.000
106A106ASP-1-0.736-0.87126.849-0.256-0.2560.0000.0000.0000.000
107A107ARG10.8530.91529.0100.1850.1850.0000.0000.0000.000
108A108HIS00.0150.01127.2390.0170.0170.0000.0000.0000.000
109A109PRO00.0560.03027.549-0.016-0.0160.0000.0000.0000.000
110A110ASP-1-0.731-0.88424.244-0.217-0.2170.0000.0000.0000.000
111A111HIS10.7660.87523.0160.2680.2680.0000.0000.0000.000
112A112THR00.003-0.00722.893-0.017-0.0170.0000.0000.0000.000
113A113ALA0-0.027-0.00623.756-0.002-0.0020.0000.0000.0000.000
114A114ALA00.0280.00219.093-0.004-0.0040.0000.0000.0000.000
115A115SER0-0.058-0.02718.624-0.026-0.0260.0000.0000.0000.000
116A116ARG10.8280.87319.3320.1600.1600.0000.0000.0000.000
117A117LEU0-0.0120.00717.9310.0080.0080.0000.0000.0000.000
118A118ALA00.0210.01215.0060.0000.0000.0000.0000.0000.000
119A119VAL0-0.0030.00114.943-0.003-0.0030.0000.0000.0000.000
120A120ALA0-0.001-0.00516.7930.0300.0300.0000.0000.0000.000
121A121ALA00.005-0.00113.7170.0500.0500.0000.0000.0000.000
122A122VAL00.0240.00311.2900.0490.0490.0000.0000.0000.000
123A123HIS0-0.018-0.00113.1610.0780.0780.0000.0000.0000.000
124A124LEU0-0.022-0.02615.7130.0590.0590.0000.0000.0000.000
125A125ALA00.0240.02310.2680.0730.0730.0000.0000.0000.000
126A126GLY00.0640.04212.2140.1470.1470.0000.0000.0000.000
127A127LEU0-0.039-0.02013.4910.0320.0320.0000.0000.0000.000
128A128ARG10.9580.96016.562-0.243-0.2430.0000.0000.0000.000
129A129LYS10.9380.96117.481-0.126-0.1260.0000.0000.0000.000
130A130ALA00.0260.03516.770-0.028-0.0280.0000.0000.0000.000
131A131PRO0-0.034-0.01318.2270.0380.0380.0000.0000.0000.000
132A132LEU0-0.029-0.01813.747-0.042-0.0420.0000.0000.0000.000
133A133GLU-1-0.917-0.94913.9980.2840.2840.0000.0000.0000.000
134A134GLY00.0090.00111.2290.0290.0290.0000.0000.0000.000
135A135GLU-1-0.914-0.9629.4110.8030.8030.0000.0000.0000.000
136A136PRO0-0.050-0.02810.1950.0250.0250.0000.0000.0000.000
137A137PHE0-0.034-0.0115.0160.4940.4940.0000.0000.0000.000
138A138ARG10.8670.9368.721-0.395-0.3950.0000.0000.0000.000
139A139VAL00.0160.0187.7630.0490.0490.0000.0000.0000.000
140A140GLU-1-0.863-0.8998.180-0.661-0.6610.0000.0000.0000.000
141A141ARG10.8110.88310.0290.7630.7630.0000.0000.0000.000
142A142LEU00.0060.01411.239-0.152-0.1520.0000.0000.0000.000
143A143PHE0-0.036-0.01713.5400.0780.0780.0000.0000.0000.000
144A144PHE0-0.008-0.01316.147-0.041-0.0410.0000.0000.0000.000
145A145TYR00.018-0.01817.553-0.005-0.0050.0000.0000.0000.000
146A146PRO0-0.0020.01320.2290.0210.0210.0000.0000.0000.000
147A147GLY00.0490.03024.055-0.014-0.0140.0000.0000.0000.000
148A148ASN0-0.050-0.04825.8170.0200.0200.0000.0000.0000.000
149A149HIS0-0.0020.01329.2040.0180.0180.0000.0000.0000.000
150A150PRO0-0.003-0.01429.603-0.014-0.0140.0000.0000.0000.000
151A151PHE00.001-0.00726.393-0.006-0.0060.0000.0000.0000.000
152A152ALA00.0300.01228.0360.0100.0100.0000.0000.0000.000
153A153PRO0-0.052-0.00624.355-0.010-0.0100.0000.0000.0000.000
154A154SER00.0250.00721.6730.0110.0110.0000.0000.0000.000
155A155PHE0-0.035-0.01616.1460.0130.0130.0000.0000.0000.000
156A156LEU0-0.0020.00821.443-0.003-0.0030.0000.0000.0000.000
157A157VAL00.0240.02216.029-0.003-0.0030.0000.0000.0000.000
158A158LYS10.8750.94819.1480.2520.2520.0000.0000.0000.000
159A159ILE00.0300.01018.111-0.029-0.0290.0000.0000.0000.000
160A160SER0-0.047-0.07120.5730.0000.0000.0000.0000.0000.000
161A161ALA0-0.0190.00120.7580.0140.0140.0000.0000.0000.000
162A162PHE00.0520.03217.555-0.005-0.0050.0000.0000.0000.000
163A163ILE0-0.040-0.00620.806-0.019-0.0190.0000.0000.0000.000
164A164ASP-1-0.798-0.90823.544-0.235-0.2350.0000.0000.0000.000
165A165GLN0-0.023-0.01517.2600.0150.0150.0000.0000.0000.000
166A166TRP0-0.069-0.02920.5970.0030.0030.0000.0000.0000.000
167A167GLU-1-0.804-0.90121.618-0.223-0.2230.0000.0000.0000.000
168A168ALA0-0.001-0.00123.9240.0090.0090.0000.0000.0000.000
169A169ALA0-0.004-0.00220.3240.0070.0070.0000.0000.0000.000
170A170VAL0-0.014-0.00522.298-0.002-0.0020.0000.0000.0000.000
171A171LEU0-0.020-0.03224.6380.0150.0150.0000.0000.0000.000
172A172ALA00.0050.02024.3410.0200.0200.0000.0000.0000.000
173A173TYR0-0.060-0.04720.5380.0230.0230.0000.0000.0000.000
174A174ARG10.9810.98927.4300.1970.1970.0000.0000.0000.000
175A175SER0-0.030-0.01229.3660.0140.0140.0000.0000.0000.000
176A176GLN0-0.065-0.02027.5640.0280.0280.0000.0000.0000.000
177A177PHE0-0.032-0.03126.4600.0110.0110.0000.0000.0000.000
178A178THR0-0.082-0.04632.0220.0130.0130.0000.0000.0000.000
179A186VAL00.0100.00329.1500.0000.0000.0000.0000.0000.000
180A187GLY00.0670.02632.2060.0040.0040.0000.0000.0000.000
181A188PRO00.0550.02932.671-0.009-0.0090.0000.0000.0000.000
182A189LYS10.8370.87933.4460.1390.1390.0000.0000.0000.000
183A190GLY0-0.033-0.00732.0910.0010.0010.0000.0000.0000.000
184A191VAL00.0220.01627.962-0.013-0.0130.0000.0000.0000.000
185A192GLU-1-0.749-0.85729.682-0.164-0.1640.0000.0000.0000.000
186A193ALA00.0080.00931.840-0.002-0.0020.0000.0000.0000.000
187A194ARG10.8590.92425.1640.2940.2940.0000.0000.0000.000
188A195LYS10.8360.90927.0530.2070.2070.0000.0000.0000.000
189A196ALA0-0.008-0.00828.560-0.001-0.0010.0000.0000.0000.000
190A197MET0-0.027-0.00626.793-0.006-0.0060.0000.0000.0000.000
191A198ARG10.8140.89221.1500.3770.3770.0000.0000.0000.000
192A199ARG10.8520.92726.5090.1820.1820.0000.0000.0000.000
193A200TYR0-0.013-0.00129.4290.0060.0060.0000.0000.0000.000
194A201TRP00.039-0.00326.3530.0060.0060.0000.0000.0000.000
195A202GLY00.0120.00626.501-0.002-0.0020.0000.0000.0000.000
196A203ASN00.0060.00027.3890.0080.0080.0000.0000.0000.000
197A204TYR0-0.025-0.01229.7270.0140.0140.0000.0000.0000.000
198A205LEU0-0.024-0.00925.8050.0060.0060.0000.0000.0000.000
199A206GLY0-0.0120.01328.392-0.001-0.0010.0000.0000.0000.000
200A207VAL0-0.088-0.03824.770-0.003-0.0030.0000.0000.0000.000
201A208ASP-1-0.759-0.85427.035-0.210-0.2100.0000.0000.0000.000
202A209TYR00.028-0.00124.7700.0080.0080.0000.0000.0000.000
203A210ALA0-0.004-0.01022.401-0.014-0.0140.0000.0000.0000.000
204A211GLU-1-0.721-0.80818.293-0.498-0.4980.0000.0000.0000.000
205A212PRO0-0.033-0.01720.920-0.010-0.0100.0000.0000.0000.000
206A213PHE00.0120.00316.879-0.025-0.0250.0000.0000.0000.000
207A214VAL0-0.011-0.01220.1910.0390.0390.0000.0000.0000.000
208A215SER00.010-0.02219.113-0.057-0.0570.0000.0000.0000.000
209A216PRO0-0.0110.00519.4610.0260.0260.0000.0000.0000.000
210A217LEU0-0.0040.00119.0970.0320.0320.0000.0000.0000.000
211A218PRO00.0150.02421.299-0.029-0.0290.0000.0000.0000.000
212A219VAL00.0210.00917.884-0.002-0.0020.0000.0000.0000.000
213A220LEU0-0.006-0.00516.1150.0270.0270.0000.0000.0000.000
214A221TYR00.0040.00717.571-0.037-0.0370.0000.0000.0000.000
215A222VAL00.0280.01519.3050.0300.0300.0000.0000.0000.000
216A223PRO00.0130.00421.749-0.011-0.0110.0000.0000.0000.000
217A224TRP00.0400.03323.6900.0030.0030.0000.0000.0000.000
218A225SER0-0.078-0.04019.276-0.008-0.0080.0000.0000.0000.000
219A226ARG10.9880.98420.0690.1900.1900.0000.0000.0000.000
220A227ALA00.0370.03218.645-0.046-0.0460.0000.0000.0000.000