FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 981Z2

Calculation Name: 1IQ0-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1IQ0

Chain ID: A

ChEMBL ID:

UniProt ID: Q5SM45

Base Structure: X-ray

Registration Date: 2023-09-24

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 592
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -12484933.174524
FMO2-HF: Nuclear repulsion 12255959.016609
FMO2-HF: Total energy -228974.157914
FMO2-MP2: Total energy -229654.473113


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:MET)


Summations of interaction energy for fragment #1(A:1:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-35.632-39.50139.255-11.881-23.502-0.037
Interaction energy analysis for fragmet #1(A:1:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.049 / q_NPA : 0.016
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3ARG10.9060.9202.867-2.678-2.4855.548-1.678-4.062-0.002
4A4ARG10.7560.7892.148-5.513-14.87621.730-5.604-6.7620.030
5A5ALA0-0.0020.0113.261-3.463-4.1910.0041.425-0.7010.004
6A6LEU0-0.010-0.0044.906-1.933-1.808-0.001-0.009-0.1150.000
7A7GLU-1-0.795-0.9076.5141.6831.6830.0000.0000.0000.000
8A8GLU-1-0.860-0.9067.4031.2861.2860.0000.0000.0000.000
9A9ALA00.001-0.0019.006-0.564-0.5640.0000.0000.0000.000
10A10ILE0-0.005-0.00110.878-0.380-0.3800.0000.0000.0000.000
11A11ALA00.0080.00012.090-0.266-0.2660.0000.0000.0000.000
12A12GLN0-0.0020.00312.997-0.405-0.4050.0000.0000.0000.000
13A13ALA00.0750.03615.019-0.140-0.1400.0000.0000.0000.000
14A14LEU0-0.044-0.02215.506-0.121-0.1210.0000.0000.0000.000
15A15LYS10.8690.92116.635-0.944-0.9440.0000.0000.0000.000
16A16GLU-1-0.983-0.97219.0510.5760.5760.0000.0000.0000.000
17A17MET0-0.092-0.03519.827-0.068-0.0680.0000.0000.0000.000
18A18GLY0-0.035-0.01322.858-0.054-0.0540.0000.0000.0000.000
19A19VAL0-0.022-0.01220.904-0.008-0.0080.0000.0000.0000.000
20A20PRO00.0070.01519.7470.0650.0650.0000.0000.0000.000
21A21VAL0-0.013-0.00416.929-0.003-0.0030.0000.0000.0000.000
22A22ARG10.8710.9019.643-1.940-1.9400.0000.0000.0000.000
23A23LEU0-0.041-0.02012.820-0.128-0.1280.0000.0000.0000.000
24A24LYS10.8660.9456.289-0.438-0.4380.0000.0000.0000.000
25A25VAL0-0.043-0.0196.523-0.267-0.2670.0000.0000.0000.000
26A26ALA0-0.002-0.0088.025-0.088-0.0880.0000.0000.0000.000
27A27ARG10.8240.8849.636-0.175-0.1750.0000.0000.0000.000
28A28ALA0-0.022-0.00911.481-0.081-0.0810.0000.0000.0000.000
29A29PRO0-0.040-0.03914.848-0.079-0.0790.0000.0000.0000.000
30A30LYS11.0071.00118.168-0.090-0.0900.0000.0000.0000.000
31A31ASP-1-0.853-0.90619.2520.0900.0900.0000.0000.0000.000
32A32LYS10.8240.89719.656-0.199-0.1990.0000.0000.0000.000
33A33PRO00.003-0.00619.7550.0080.0080.0000.0000.0000.000
34A34GLY00.0240.01916.4130.0590.0590.0000.0000.0000.000
35A35ASP-1-0.780-0.86612.1320.3730.3730.0000.0000.0000.000
36A36TYR0-0.028-0.0337.5120.2740.2740.0000.0000.0000.000
37A37GLY00.0360.03111.771-0.113-0.1130.0000.0000.0000.000
38A38VAL0-0.0030.00712.1590.0930.0930.0000.0000.0000.000
39A39PRO00.0120.01413.795-0.117-0.1170.0000.0000.0000.000
40A40LEU00.0140.00716.8030.0340.0340.0000.0000.0000.000
41A41PHE00.009-0.01319.478-0.055-0.0550.0000.0000.0000.000
42A42ALA00.0010.00119.067-0.035-0.0350.0000.0000.0000.000
43A43LEU00.0900.03718.565-0.027-0.0270.0000.0000.0000.000
44A44ALA0-0.0070.00522.207-0.027-0.0270.0000.0000.0000.000
45A45LYS10.9210.95624.686-0.251-0.2510.0000.0000.0000.000
46A46GLU-1-0.922-0.95022.6840.4120.4120.0000.0000.0000.000
47A47LEU00.0220.01523.796-0.015-0.0150.0000.0000.0000.000
48A48ARG10.8270.91627.523-0.268-0.2680.0000.0000.0000.000
49A49LYS10.9540.97727.538-0.324-0.3240.0000.0000.0000.000
50A50PRO00.0430.01427.5860.0080.0080.0000.0000.0000.000
51A51PRO00.0770.04523.3280.0140.0140.0000.0000.0000.000
52A52GLN0-0.008-0.01023.6320.0490.0490.0000.0000.0000.000
53A53ALA0-0.027-0.01425.3500.0070.0070.0000.0000.0000.000
54A54ILE00.0150.01421.5420.0060.0060.0000.0000.0000.000
55A55ALA00.0240.02520.5480.0440.0440.0000.0000.0000.000
56A56GLN0-0.043-0.04221.1700.0360.0360.0000.0000.0000.000
57A57GLU-1-0.846-0.89823.5680.4290.4290.0000.0000.0000.000
58A58LEU00.002-0.01015.9500.0110.0110.0000.0000.0000.000
59A59LYS10.8430.91119.300-0.418-0.4180.0000.0000.0000.000
60A60ASP-1-0.867-0.91920.3320.3940.3940.0000.0000.0000.000
61A61ARG10.8170.89521.179-0.475-0.4750.0000.0000.0000.000
62A62LEU0-0.0010.01013.5920.0640.0640.0000.0000.0000.000
63A63PRO0-0.036-0.00315.010-0.050-0.0500.0000.0000.0000.000
64A64LEU00.006-0.01414.1570.1430.1430.0000.0000.0000.000
65A65PRO00.0220.0198.908-0.100-0.1000.0000.0000.0000.000
66A66GLU-1-0.829-0.9159.430-0.357-0.3570.0000.0000.0000.000
67A67PHE00.0580.0406.011-0.127-0.1270.0000.0000.0000.000
68A68VAL0-0.073-0.04010.6000.0710.0710.0000.0000.0000.000
69A69GLU-1-0.895-0.94313.1130.0830.0830.0000.0000.0000.000
70A70GLU-1-0.865-0.92516.6370.2890.2890.0000.0000.0000.000
71A71ALA00.0060.01216.7050.0730.0730.0000.0000.0000.000
72A72VAL0-0.001-0.01117.862-0.072-0.0720.0000.0000.0000.000
73A73PRO00.0120.00419.7310.0390.0390.0000.0000.0000.000
74A74VAL0-0.027-0.01420.746-0.062-0.0620.0000.0000.0000.000
75A75GLY00.0200.00921.8260.0100.0100.0000.0000.0000.000
76A76GLY0-0.029-0.03522.407-0.012-0.0120.0000.0000.0000.000
77A77TYR00.0080.00216.2230.0290.0290.0000.0000.0000.000
78A78LEU0-0.0210.00616.575-0.064-0.0640.0000.0000.0000.000
79A79ASN0-0.022-0.02815.3960.1630.1630.0000.0000.0000.000
80A80PHE00.0270.00412.307-0.008-0.0080.0000.0000.0000.000
81A81ARG10.8290.91013.825-0.263-0.2630.0000.0000.0000.000
82A82LEU00.0130.0049.2640.0170.0170.0000.0000.0000.000
83A83ARG10.8440.89512.698-0.031-0.0310.0000.0000.0000.000
84A84THR00.0330.00313.301-0.045-0.0450.0000.0000.0000.000
85A85GLU-1-0.799-0.86813.963-0.428-0.4280.0000.0000.0000.000
86A86ALA00.0550.03010.015-0.122-0.1220.0000.0000.0000.000
87A87LEU0-0.0200.0019.426-0.276-0.2760.0000.0000.0000.000
88A88LEU00.016-0.0099.732-0.213-0.2130.0000.0000.0000.000
89A89ARG10.8440.9069.8560.5250.5250.0000.0000.0000.000
90A90GLU-1-0.767-0.8692.598-10.813-8.9651.290-1.575-1.563-0.018
91A91ALA0-0.028-0.0036.594-0.390-0.3900.0000.0000.0000.000
92A92LEU0-0.051-0.0188.930-0.027-0.0270.0000.0000.0000.000
93A93ARG10.7020.8342.3525.8976.8921.189-0.896-1.287-0.003
94A94PRO0-0.034-0.0138.260-0.119-0.1190.0000.0000.0000.000
95A95LYS10.9130.9516.6511.3811.3810.0000.0000.0000.000
96A96ALA0-0.035-0.0208.1630.4760.4760.0000.0000.0000.000
97A97PRO0-0.002-0.0028.178-0.339-0.3390.0000.0000.0000.000
98A98PHE00.0130.0133.551-0.4120.1090.009-0.081-0.4490.000
99A99PRO0-0.012-0.0167.5330.1710.1710.0000.0000.0000.000
100A100ARG10.8330.91110.6420.2800.2800.0000.0000.0000.000
101A101ARG10.8710.9239.4060.1520.1520.0000.0000.0000.000
102A102PRO0-0.012-0.01515.241-0.040-0.0400.0000.0000.0000.000
103A103GLY00.0600.03018.6670.0320.0320.0000.0000.0000.000
104A104VAL0-0.010-0.00219.385-0.023-0.0230.0000.0000.0000.000
105A105VAL0-0.0010.01316.9770.0250.0250.0000.0000.0000.000
106A106LEU0-0.019-0.02720.325-0.027-0.0270.0000.0000.0000.000
107A107VAL0-0.006-0.01219.7950.0130.0130.0000.0000.0000.000
108A108GLU-1-0.811-0.87923.030-0.085-0.0850.0000.0000.0000.000
109A109HIS00.0370.01623.9540.0110.0110.0000.0000.0000.000
110A110THR0-0.031-0.01827.060-0.003-0.0030.0000.0000.0000.000
111A111SER00.0090.00129.9450.0040.0040.0000.0000.0000.000
112A112VAL0-0.0270.00132.7570.0070.0070.0000.0000.0000.000
113A113ASN00.011-0.00135.4670.0030.0030.0000.0000.0000.000
114A114PRO00.0250.03339.173-0.003-0.0030.0000.0000.0000.000
115A115ASN0-0.036-0.03740.4970.0000.0000.0000.0000.0000.000
116A116LYS10.8100.90440.8750.0800.0800.0000.0000.0000.000
117A117GLU-1-0.797-0.86839.927-0.082-0.0820.0000.0000.0000.000
118A118LEU00.0170.01233.2590.0040.0040.0000.0000.0000.000
119A119HIS00.0350.00235.898-0.004-0.0040.0000.0000.0000.000
120A120VAL00.0740.01933.485-0.005-0.0050.0000.0000.0000.000
121A121GLY0-0.0260.00432.023-0.006-0.0060.0000.0000.0000.000
122A122HIS00.022-0.00231.325-0.006-0.0060.0000.0000.0000.000
123A123LEU00.0110.00828.260-0.010-0.0100.0000.0000.0000.000
124A124ARG10.8590.92524.2410.1080.1080.0000.0000.0000.000
125A125ASN0-0.0190.00925.250-0.026-0.0260.0000.0000.0000.000
126A126ILE00.0710.03225.398-0.012-0.0120.0000.0000.0000.000
127A127ALA0-0.017-0.01123.361-0.021-0.0210.0000.0000.0000.000
128A128LEU0-0.002-0.01419.824-0.035-0.0350.0000.0000.0000.000
129A129GLY00.0480.01420.330-0.023-0.0230.0000.0000.0000.000
130A130ASP-1-0.773-0.86620.830-0.357-0.3570.0000.0000.0000.000
131A131ALA0-0.0020.00917.475-0.037-0.0370.0000.0000.0000.000
132A132ILE00.0120.01014.628-0.063-0.0630.0000.0000.0000.000
133A133ALA0-0.0130.00116.035-0.026-0.0260.0000.0000.0000.000
134A134ARG10.7670.88016.5040.4110.4110.0000.0000.0000.000
135A135ILE0-0.0040.00011.000-0.078-0.0780.0000.0000.0000.000
136A136LEU0-0.001-0.00411.733-0.116-0.1160.0000.0000.0000.000
137A137ALA0-0.0020.01112.947-0.004-0.0040.0000.0000.0000.000
138A138TYR00.0380.0237.6390.1330.1330.0000.0000.0000.000
139A139ALA0-0.001-0.0068.580-0.198-0.1980.0000.0000.0000.000
140A140GLY00.0270.0259.5350.1510.1510.0000.0000.0000.000
141A141ARG10.8130.89511.9720.2000.2000.0000.0000.0000.000
142A142GLU-1-0.827-0.89514.782-0.201-0.2010.0000.0000.0000.000
143A143VAL0-0.032-0.02316.8140.0310.0310.0000.0000.0000.000
144A144LEU0-0.0100.00819.666-0.004-0.0040.0000.0000.0000.000
145A145VAL0-0.029-0.01822.4350.0090.0090.0000.0000.0000.000
146A146LEU0-0.033-0.01624.7420.0080.0080.0000.0000.0000.000
147A147ASN00.0270.00128.1630.0050.0050.0000.0000.0000.000
148A148TYR0-0.064-0.06330.7640.0050.0050.0000.0000.0000.000
149A149ILE00.004-0.00433.591-0.002-0.0020.0000.0000.0000.000
150A150ASP-1-0.830-0.93537.020-0.044-0.0440.0000.0000.0000.000
151A151ASP-1-0.802-0.89239.658-0.056-0.0560.0000.0000.0000.000
152A152THR0-0.015-0.00242.6210.0030.0030.0000.0000.0000.000
153A153GLY00.0580.05043.5520.0040.0040.0000.0000.0000.000
154A154ARG10.8960.90244.4780.0270.0270.0000.0000.0000.000
155A155GLN0-0.0100.00942.905-0.003-0.0030.0000.0000.0000.000
156A156ALA00.0660.01943.960-0.002-0.0020.0000.0000.0000.000
157A157ALA00.0260.02045.7960.0000.0000.0000.0000.0000.000
158A158GLU-1-0.772-0.86748.519-0.040-0.0400.0000.0000.0000.000
159A159THR0-0.042-0.01646.4390.0010.0010.0000.0000.0000.000
160A160LEU00.0210.01248.2320.0000.0000.0000.0000.0000.000
161A161PHE00.0240.01450.9750.0010.0010.0000.0000.0000.000
162A162ALA0-0.012-0.00652.1060.0010.0010.0000.0000.0000.000
163A163LEU0-0.021-0.01749.6300.0000.0000.0000.0000.0000.000
164A164ARG10.9530.98353.9790.0410.0410.0000.0000.0000.000
165A165HIS0-0.0100.00357.0520.0020.0020.0000.0000.0000.000
166A166TYR0-0.099-0.09355.3600.0010.0010.0000.0000.0000.000
167A167GLY0-0.0160.00158.8850.0000.0000.0000.0000.0000.000
168A168LEU0-0.068-0.02753.897-0.001-0.0010.0000.0000.0000.000
169A169THR00.005-0.00755.8550.0000.0000.0000.0000.0000.000
170A170TRP0-0.042-0.01947.7230.0010.0010.0000.0000.0000.000
171A171ASP-1-0.760-0.87551.636-0.070-0.0700.0000.0000.0000.000
172A172GLY0-0.018-0.01451.2220.0000.0000.0000.0000.0000.000
173A173LYS10.7880.88149.1830.0670.0670.0000.0000.0000.000
174A174GLU-1-0.779-0.85047.429-0.074-0.0740.0000.0000.0000.000
175A175LYS10.8230.89438.3360.1140.1140.0000.0000.0000.000
176A176TYR00.0400.00144.5520.0040.0040.0000.0000.0000.000
177A177ASP-1-0.730-0.86939.921-0.097-0.0970.0000.0000.0000.000
178A178HIS0-0.033-0.02540.3020.0070.0070.0000.0000.0000.000
179A179PHE0-0.054-0.01244.8470.0050.0050.0000.0000.0000.000
180A180ALA0-0.006-0.00845.6950.0040.0040.0000.0000.0000.000
181A181GLY00.0680.02245.4490.0040.0040.0000.0000.0000.000
182A182ARG10.7810.86146.2770.0670.0670.0000.0000.0000.000
183A183ALA00.0030.00749.4420.0030.0030.0000.0000.0000.000
184A184TYR0-0.050-0.04145.5140.0030.0030.0000.0000.0000.000
185A185VAL0-0.023-0.02747.3350.0030.0030.0000.0000.0000.000
186A186ARG10.8890.95749.9330.0450.0450.0000.0000.0000.000
187A187LEU00.0540.02851.7440.0020.0020.0000.0000.0000.000
188A188HIS10.7840.89148.9170.0430.0430.0000.0000.0000.000
189A189GLN0-0.061-0.02852.1580.0010.0010.0000.0000.0000.000
190A190ASP-1-0.843-0.88154.705-0.032-0.0320.0000.0000.0000.000
191A191PRO0-0.015-0.01857.7540.0010.0010.0000.0000.0000.000
192A192GLU-1-0.897-0.92960.387-0.024-0.0240.0000.0000.0000.000
193A193TYR0-0.022-0.03251.3920.0010.0010.0000.0000.0000.000
194A194GLU-1-0.889-0.95355.907-0.024-0.0240.0000.0000.0000.000
195A195ARG10.8130.89458.5120.0230.0230.0000.0000.0000.000
196A196LEU00.0170.00757.9730.0000.0000.0000.0000.0000.000
197A197GLN0-0.021-0.00554.066-0.001-0.0010.0000.0000.0000.000
198A198PRO0-0.013-0.00756.9260.0000.0000.0000.0000.0000.000
199A199ALA00.0560.03158.7960.0000.0000.0000.0000.0000.000
200A200ILE0-0.026-0.01252.643-0.002-0.0020.0000.0000.0000.000
201A201GLU-1-0.825-0.90053.372-0.028-0.0280.0000.0000.0000.000
202A202GLU-1-0.952-0.96555.101-0.026-0.0260.0000.0000.0000.000
203A203VAL0-0.034-0.01952.019-0.001-0.0010.0000.0000.0000.000
204A204LEU0-0.020-0.01148.509-0.002-0.0020.0000.0000.0000.000
205A205HIS00.0460.03951.1400.0000.0000.0000.0000.0000.000
206A206ALA00.0340.01052.9680.0000.0000.0000.0000.0000.000
207A207LEU0-0.058-0.02746.522-0.002-0.0020.0000.0000.0000.000
208A208GLU-1-0.916-0.97348.195-0.029-0.0290.0000.0000.0000.000
209A209ARG10.7030.85549.0350.0290.0290.0000.0000.0000.000
210A210GLY0-0.033-0.01948.0280.0000.0000.0000.0000.0000.000
211A211GLU-1-0.914-0.94448.914-0.035-0.0350.0000.0000.0000.000
212A212LEU0-0.0100.00149.7890.0000.0000.0000.0000.0000.000
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