FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 98MJ2

Calculation Name: 2HWJ-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2HWJ

Chain ID: A

ChEMBL ID:

UniProt ID: A9CIY5

Base Structure: X-ray

Registration Date: 2023-09-22

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 201
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2272060.255616
FMO2-HF: Nuclear repulsion 2192232.496145
FMO2-HF: Total energy -79827.759471
FMO2-MP2: Total energy -80064.491452


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:4:ILE)


Summations of interaction energy for fragment #1(A:4:ILE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-10.921-6.1913.923-3.865-4.787-0.006
Interaction energy analysis for fragmet #1(A:4:ILE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.015 / q_NPA : -0.028
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A6GLU-1-0.817-0.9003.877-8.678-3.454-0.028-2.581-2.615-0.009
4A7PRO0-0.081-0.0035.9010.3810.3810.0000.0000.0000.000
5A8ARG10.9610.9641.974-2.739-3.2333.951-1.284-2.1720.003
6A9LEU00.0010.0088.660-0.010-0.0100.0000.0000.0000.000
7A10SER0-0.013-0.01011.2430.0870.0870.0000.0000.0000.000
8A11ARG10.9170.94613.367-0.062-0.0620.0000.0000.0000.000
9A12ILE00.0040.01716.8270.0180.0180.0000.0000.0000.000
10A13ALA00.0830.04819.202-0.005-0.0050.0000.0000.0000.000
11A14ILE00.0570.00622.881-0.011-0.0110.0000.0000.0000.000
12A15ASP-1-0.955-0.96024.700-0.022-0.0220.0000.0000.0000.000
13A16LYS10.8740.91022.1210.0100.0100.0000.0000.0000.000
14A17LEU0-0.059-0.01419.795-0.008-0.0080.0000.0000.0000.000
15A18ARG10.8700.93622.1690.0810.0810.0000.0000.0000.000
16A19PRO00.0180.01123.521-0.018-0.0180.0000.0000.0000.000
17A20THR0-0.029-0.02322.851-0.002-0.0020.0000.0000.0000.000
18A21GLN0-0.013-0.02126.274-0.015-0.0150.0000.0000.0000.000
19A22ILE00.0170.01329.8600.0050.0050.0000.0000.0000.000
20A23ALA00.0400.03033.1820.0060.0060.0000.0000.0000.000
21A24VAL0-0.041-0.02331.643-0.010-0.0100.0000.0000.0000.000
22A25GLY00.0380.04434.6230.0060.0060.0000.0000.0000.000
23A26PHE00.015-0.02736.128-0.001-0.0010.0000.0000.0000.000
24A27ARG11.0081.01338.3640.0630.0630.0000.0000.0000.000
25A28GLU-1-0.885-0.91934.238-0.104-0.1040.0000.0000.0000.000
26A29VAL0-0.032-0.02033.5320.0000.0000.0000.0000.0000.000
27A30GLU-1-0.879-0.95235.387-0.047-0.0470.0000.0000.0000.000
28A31LEU0-0.020-0.00237.7410.0030.0030.0000.0000.0000.000
29A32LYS10.9660.97630.2730.1060.1060.0000.0000.0000.000
30A33ARG10.8170.89834.5760.0450.0450.0000.0000.0000.000
31A34LYS10.8550.94235.7070.0480.0480.0000.0000.0000.000
32A35GLU-1-0.906-0.95434.293-0.077-0.0770.0000.0000.0000.000
33A36TRP00.0300.00728.4640.0010.0010.0000.0000.0000.000
34A37ARG10.8650.93833.9350.0410.0410.0000.0000.0000.000
35A38GLU-1-0.959-0.98036.943-0.032-0.0320.0000.0000.0000.000
36A39THR00.0110.01532.952-0.002-0.0020.0000.0000.0000.000
37A40ARG10.8000.87632.1110.0230.0230.0000.0000.0000.000
38A41LYS10.8750.94532.5510.0310.0310.0000.0000.0000.000
39A42LYS10.9260.95834.424-0.002-0.0020.0000.0000.0000.000
40A43ASP-1-0.826-0.90830.363-0.024-0.0240.0000.0000.0000.000
41A44GLY00.0260.02828.1730.0060.0060.0000.0000.0000.000
42A45ASP-1-0.938-0.96227.5610.0400.0400.0000.0000.0000.000
43A46ASP-1-0.906-0.94321.8550.0330.0330.0000.0000.0000.000
44A47PHE0-0.066-0.06117.811-0.005-0.0050.0000.0000.0000.000
45A48LEU0-0.048-0.00418.842-0.025-0.0250.0000.0000.0000.000
46A49GLY00.0620.01921.7950.0070.0070.0000.0000.0000.000
47A50ASN0-0.036-0.01022.067-0.006-0.0060.0000.0000.0000.000
48A51HIS0-0.004-0.00821.687-0.013-0.0130.0000.0000.0000.000
49A52ILE0-0.0050.00016.1830.0110.0110.0000.0000.0000.000
50A53VAL0-0.053-0.02218.850-0.013-0.0130.0000.0000.0000.000
51A54PRO00.0420.03416.706-0.008-0.0080.0000.0000.0000.000
52A55VAL00.011-0.01714.6490.0420.0420.0000.0000.0000.000
53A56VAL00.0080.01515.094-0.062-0.0620.0000.0000.0000.000
54A57ALA00.0010.00112.9990.0510.0510.0000.0000.0000.000
55A58GLY00.010-0.01214.965-0.026-0.0260.0000.0000.0000.000
56A59PRO00.0330.01017.0700.0170.0170.0000.0000.0000.000
57A60LYS10.8490.91719.0810.0580.0580.0000.0000.0000.000
58A61ASP-1-0.786-0.91215.091-0.031-0.0310.0000.0000.0000.000
59A62ARG10.7780.93616.7260.0480.0480.0000.0000.0000.000
60A63ALA00.1040.05016.739-0.022-0.0220.0000.0000.0000.000
61A64TYR0-0.035-0.01918.0270.0290.0290.0000.0000.0000.000
62A65LEU00.0060.01119.404-0.028-0.0280.0000.0000.0000.000
63A66ILE00.0200.00519.4790.0040.0040.0000.0000.0000.000
64A67ASP-1-0.828-0.91221.775-0.214-0.2140.0000.0000.0000.000
65A68HIS0-0.084-0.04922.7470.0110.0110.0000.0000.0000.000
66A69HIS00.1080.04725.1990.0190.0190.0000.0000.0000.000
67A70HIS00.0000.03027.9220.0150.0150.0000.0000.0000.000
68A71LEU00.0070.00525.4770.0070.0070.0000.0000.0000.000
69A72VAL00.0650.02624.0510.0100.0100.0000.0000.0000.000
70A73LEU00.0110.01027.3450.0110.0110.0000.0000.0000.000
71A74ALA0-0.029-0.01030.7580.0080.0080.0000.0000.0000.000
72A75LEU00.020-0.00925.9520.0060.0060.0000.0000.0000.000
73A76SER0-0.0340.00329.2190.0080.0080.0000.0000.0000.000
74A77LYS10.9270.94830.5150.0570.0570.0000.0000.0000.000
75A78GLU-1-0.877-0.92332.575-0.031-0.0310.0000.0000.0000.000
76A79GLY00.0000.01432.8760.0040.0040.0000.0000.0000.000
77A80VAL0-0.049-0.01226.7150.0060.0060.0000.0000.0000.000
78A81GLU-1-0.876-0.94326.2550.0090.0090.0000.0000.0000.000
79A82HIS0-0.045-0.02621.827-0.006-0.0060.0000.0000.0000.000
80A83VAL0-0.008-0.00320.667-0.004-0.0040.0000.0000.0000.000
81A84LEU0-0.0140.00117.3680.0070.0070.0000.0000.0000.000
82A85THR0-0.012-0.00215.202-0.018-0.0180.0000.0000.0000.000
83A86SER00.0540.01312.555-0.003-0.0030.0000.0000.0000.000
84A87GLU-1-0.912-0.9559.397-0.394-0.3940.0000.0000.0000.000
85A88VAL00.004-0.00210.878-0.136-0.1360.0000.0000.0000.000
86A89ALA0-0.005-0.01811.935-0.051-0.0510.0000.0000.0000.000
87A90LYS10.9310.9848.0800.3920.3920.0000.0000.0000.000
88A91PHE0-0.008-0.01012.287-0.030-0.0300.0000.0000.0000.000
89A92SER0-0.0150.01113.1700.0180.0180.0000.0000.0000.000
90A93HIS00.0160.00814.5170.0340.0340.0000.0000.0000.000
91A94LEU00.0040.01616.0250.0200.0200.0000.0000.0000.000
92A95GLY00.016-0.00319.3790.0190.0190.0000.0000.0000.000
93A96LYS10.9040.92422.6230.0590.0590.0000.0000.0000.000
94A97ASP-1-0.841-0.91124.540-0.105-0.1050.0000.0000.0000.000
95A98GLU-1-0.921-0.96222.409-0.182-0.1820.0000.0000.0000.000
96A99PHE0-0.014-0.00518.855-0.015-0.0150.0000.0000.0000.000
97A100TRP0-0.010-0.01122.308-0.014-0.0140.0000.0000.0000.000
98A101SER00.0510.03625.230-0.009-0.0090.0000.0000.0000.000
99A102VAL00.0620.02919.798-0.011-0.0110.0000.0000.0000.000
100A103MET0-0.043-0.03420.591-0.031-0.0310.0000.0000.0000.000
101A104ASP-1-0.956-0.98223.040-0.163-0.1630.0000.0000.0000.000
102A105HIS0-0.0210.00924.3220.0050.0050.0000.0000.0000.000
103A106ARG10.8800.93016.0810.4180.4180.0000.0000.0000.000
104A107ASN0-0.055-0.01723.036-0.005-0.0050.0000.0000.0000.000
105A108LEU0-0.017-0.01619.339-0.009-0.0090.0000.0000.0000.000
106A109ILE0-0.046-0.01423.6680.0100.0100.0000.0000.0000.000
107A110TYR00.0400.00826.746-0.001-0.0010.0000.0000.0000.000
108A111PRO0-0.004-0.00430.2340.0070.0070.0000.0000.0000.000
109A112PHE0-0.039-0.03632.6160.0040.0040.0000.0000.0000.000
110A113ASP-1-0.813-0.88435.627-0.076-0.0760.0000.0000.0000.000
111A114ALA00.0850.04338.007-0.002-0.0020.0000.0000.0000.000
112A115GLN0-0.143-0.08739.8570.0010.0010.0000.0000.0000.000
113A116GLY0-0.034-0.02939.2020.0010.0010.0000.0000.0000.000
114A117LEU00.0050.01540.154-0.002-0.0020.0000.0000.0000.000
115A118ARG10.9210.97132.2760.1190.1190.0000.0000.0000.000
116A119ARG10.9600.98336.1180.0740.0740.0000.0000.0000.000
117A120GLN00.013-0.00534.460-0.004-0.0040.0000.0000.0000.000
118A121SER00.0510.02229.0770.0010.0010.0000.0000.0000.000
119A122GLY0-0.043-0.00730.8590.0000.0000.0000.0000.0000.000
120A123ASP-1-0.877-0.95632.342-0.067-0.0670.0000.0000.0000.000
121A124ILE0-0.061-0.01928.1180.0010.0010.0000.0000.0000.000
122A125PRO00.0060.03630.4210.0040.0040.0000.0000.0000.000
123A126LYS10.8680.91528.1080.0650.0650.0000.0000.0000.000
124A127ASN00.019-0.02127.4530.0010.0010.0000.0000.0000.000
125A128ILE00.0620.02525.917-0.001-0.0010.0000.0000.0000.000
126A129HIS0-0.057-0.03729.4800.0020.0020.0000.0000.0000.000
127A130ASP-1-0.879-0.92332.401-0.049-0.0490.0000.0000.0000.000
128A131LEU0-0.086-0.02329.692-0.004-0.0040.0000.0000.0000.000
129A132GLU-1-0.818-0.92433.895-0.064-0.0640.0000.0000.0000.000
130A133ASP-1-0.865-0.94136.625-0.069-0.0690.0000.0000.0000.000
131A134ASP-1-0.774-0.90437.859-0.082-0.0820.0000.0000.0000.000
132A135PRO00.0290.02439.581-0.004-0.0040.0000.0000.0000.000
133A136PHE00.0850.01241.939-0.001-0.0010.0000.0000.0000.000
134A137ARG10.8200.92032.1140.1090.1090.0000.0000.0000.000
135A138SER0-0.022-0.01437.926-0.004-0.0040.0000.0000.0000.000
136A139LEU00.0030.02339.607-0.001-0.0010.0000.0000.0000.000
137A140ALA00.0450.02038.403-0.001-0.0010.0000.0000.0000.000
138A141GLY00.0110.01236.706-0.004-0.0040.0000.0000.0000.000
139A142ALA0-0.029-0.01537.545-0.002-0.0020.0000.0000.0000.000
140A143LEU00.0350.01540.5820.0000.0000.0000.0000.0000.000
141A144ARG10.8360.92733.5630.1230.1230.0000.0000.0000.000
142A145MET0-0.095-0.04637.625-0.002-0.0020.0000.0000.0000.000
143A146ALA00.0200.02238.8890.0020.0020.0000.0000.0000.000
144A147GLY0-0.025-0.00140.8490.0020.0020.0000.0000.0000.000
145A148GLY0-0.018-0.03341.8390.0010.0010.0000.0000.0000.000
146A149TYR0-0.054-0.03835.698-0.002-0.0020.0000.0000.0000.000
147A150ALA0-0.0190.00035.5630.0000.0000.0000.0000.0000.000
148A151LYS10.9480.95429.8290.1530.1530.0000.0000.0000.000
149A152VAL00.0070.00831.2480.0000.0000.0000.0000.0000.000
150A153ILE00.010-0.01226.190-0.001-0.0010.0000.0000.0000.000
151A154ILE0-0.0090.00726.896-0.013-0.0130.0000.0000.0000.000
152A155PRO00.0450.03926.2300.0050.0050.0000.0000.0000.000
153A156PHE00.022-0.00526.7980.0130.0130.0000.0000.0000.000
154A157SER00.0350.02330.7110.0130.0130.0000.0000.0000.000
155A158GLU-1-0.843-0.92932.002-0.135-0.1350.0000.0000.0000.000
156A159PHE0-0.010-0.00432.0980.0080.0080.0000.0000.0000.000
157A160GLY00.0230.02835.4310.0060.0060.0000.0000.0000.000
158A161TRP00.013-0.01237.0160.0120.0120.0000.0000.0000.000
159A162ALA0-0.013-0.01338.4900.0060.0060.0000.0000.0000.000
160A163ASP-1-0.853-0.90839.511-0.083-0.0830.0000.0000.0000.000
161A164PHE0-0.009-0.00441.3070.0050.0050.0000.0000.0000.000
162A165LEU00.0170.00042.3250.0040.0040.0000.0000.0000.000
163A166ARG10.8770.93640.0350.0840.0840.0000.0000.0000.000
164A167ARG10.7470.85043.3780.0820.0820.0000.0000.0000.000
165A168ARG10.8050.90446.2620.0740.0740.0000.0000.0000.000
166A169ILE00.0080.02347.3920.0010.0010.0000.0000.0000.000
167A170ASP-1-0.861-0.92849.594-0.048-0.0480.0000.0000.0000.000
168A171ARG10.9420.93747.8330.0520.0520.0000.0000.0000.000
169A172ASP-1-0.855-0.91950.115-0.043-0.0430.0000.0000.0000.000
170A173LEU00.0400.03651.7900.0010.0010.0000.0000.0000.000
171A174LEU0-0.070-0.03345.2890.0000.0000.0000.0000.0000.000
172A175SER0-0.100-0.05448.6840.0000.0000.0000.0000.0000.000
173A176ASP-1-0.944-0.93250.177-0.038-0.0380.0000.0000.0000.000
174A177SER0-0.034-0.03752.2290.0010.0010.0000.0000.0000.000
175A178PHE00.0350.01142.925-0.003-0.0030.0000.0000.0000.000
176A179ASP-1-0.927-0.97448.246-0.055-0.0550.0000.0000.0000.000
177A180ASP-1-0.845-0.92149.877-0.046-0.0460.0000.0000.0000.000
178A181ALA00.001-0.00548.409-0.001-0.0010.0000.0000.0000.000
179A182LEU0-0.069-0.03744.472-0.004-0.0040.0000.0000.0000.000
180A183ALA0-0.018-0.01347.563-0.003-0.0030.0000.0000.0000.000
181A184GLU-1-0.911-0.96150.516-0.055-0.0550.0000.0000.0000.000
182A185ALA00.0190.01345.308-0.002-0.0020.0000.0000.0000.000
183A186MET0-0.050-0.01744.947-0.005-0.0050.0000.0000.0000.000
184A187LYS10.9670.98547.6120.0510.0510.0000.0000.0000.000
185A188LEU0-0.008-0.00647.944-0.001-0.0010.0000.0000.0000.000
186A189ALA0-0.0010.00544.210-0.002-0.0020.0000.0000.0000.000
187A190LYS10.8840.95444.2390.0790.0790.0000.0000.0000.000
188A191SER0-0.063-0.02947.9350.0020.0020.0000.0000.0000.000
189A192ARG11.0020.95948.0340.0620.0620.0000.0000.0000.000
190A193GLU-1-0.916-0.95048.231-0.068-0.0680.0000.0000.0000.000
191A194ALA00.0150.01744.023-0.002-0.0020.0000.0000.0000.000
192A195ARG10.9090.94843.4130.0730.0730.0000.0000.0000.000
193A196HIS0-0.0270.00741.728-0.003-0.0030.0000.0000.0000.000
194A197LEU00.0010.00539.414-0.005-0.0050.0000.0000.0000.000
195A198PRO00.0090.01934.624-0.001-0.0010.0000.0000.0000.000
196A199GLY00.0310.00236.7020.0010.0010.0000.0000.0000.000
197A200TRP0-0.009-0.01137.2880.0040.0040.0000.0000.0000.000
198A201CYS0-0.032-0.00640.997-0.002-0.0020.0000.0000.0000.000
199A202GLY00.0290.00642.9050.0040.0040.0000.0000.0000.000
200A203VAL0-0.020-0.00346.697-0.001-0.0010.0000.0000.0000.000
201A204GLU-1-0.976-0.98045.240-0.087-0.0870.0000.0000.0000.000