Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: 9G762

Calculation Name: 2QLZ-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2QLZ

Chain ID: A

ChEMBL ID:

UniProt ID: Q8U4J2

Base Structure: X-ray

Registration Date: 2023-03-13

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 223
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2565158.281861
FMO2-HF: Nuclear repulsion 2473750.590385
FMO2-HF: Total energy -91407.691476
FMO2-MP2: Total energy -91673.043466


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:2:GLU)


Summations of interaction energy for fragment #1(A:2:GLU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-13.497-12.384-0.006-0.444-0.6640.002
Interaction energy analysis for fragmet #1(A:2:GLU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : -1 / q_Mulliken : -0.972 / q_NPA : -0.994
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A4ASP-1-0.793-0.9033.92221.42022.533-0.006-0.444-0.6640.002
4A5LEU0-0.014-0.0315.922-2.579-2.5790.0000.0000.0000.000
5A6PHE0-0.0160.0128.229-2.354-2.3540.0000.0000.0000.000
6A7TYR00.0670.0429.531-3.179-3.1790.0000.0000.0000.000
7A8ILE0-0.087-0.0389.621-1.925-1.9250.0000.0000.0000.000
8A9LEU00.0240.00211.897-1.644-1.6440.0000.0000.0000.000
9A10GLY00.0540.04413.718-1.341-1.3410.0000.0000.0000.000
10A11ASN0-0.052-0.03215.676-1.253-1.2530.0000.0000.0000.000
11A12LYS10.9210.95518.300-11.300-11.3000.0000.0000.0000.000
12A13VAL00.0310.00720.547-0.141-0.1410.0000.0000.0000.000
13A14ARG10.8270.91813.413-19.152-19.1520.0000.0000.0000.000
14A15ARG10.9400.95616.963-14.216-14.2160.0000.0000.0000.000
15A16ASP-1-0.766-0.85718.57011.53511.5350.0000.0000.0000.000
16A17LEU00.0100.02318.855-0.166-0.1660.0000.0000.0000.000
17A18LEU00.0360.01814.004-0.184-0.1840.0000.0000.0000.000
18A19SER0-0.039-0.00518.252-0.408-0.4080.0000.0000.0000.000
19A20HIS10.8210.91321.087-12.287-12.2870.0000.0000.0000.000
20A21LEU0-0.005-0.01717.728-0.207-0.2070.0000.0000.0000.000
21A22THR0-0.029-0.02918.226-0.155-0.1550.0000.0000.0000.000
22A23CYS0-0.088-0.03720.676-0.711-0.7110.0000.0000.0000.000
23A24MET0-0.0240.00321.005-0.461-0.4610.0000.0000.0000.000
24A25GLU-1-0.792-0.88224.60711.66311.6630.0000.0000.0000.000
25A27TYR00.0250.03025.252-0.383-0.3830.0000.0000.0000.000
26A28PHE00.0430.02129.6900.0940.0940.0000.0000.0000.000
27A29SER0-0.049-0.02328.2530.0250.0250.0000.0000.0000.000
28A30LEU00.005-0.01321.6650.2140.2140.0000.0000.0000.000
29A31LEU0-0.025-0.01623.2810.5380.5380.0000.0000.0000.000
30A32SER0-0.001-0.01126.299-0.313-0.3130.0000.0000.0000.000
31A33SER0-0.017-0.01928.801-0.024-0.0240.0000.0000.0000.000
32A34LYS10.7810.86731.313-9.060-9.0600.0000.0000.0000.000
33A35VAL0-0.085-0.03826.0130.0670.0670.0000.0000.0000.000
34A36SER00.0050.00928.7470.2500.2500.0000.0000.0000.000
35A37VAL00.004-0.00424.1020.1950.1950.0000.0000.0000.000
36A38SER00.0290.02126.9480.0510.0510.0000.0000.0000.000
37A39SER00.0710.01825.5540.4640.4640.0000.0000.0000.000
38A40THR00.0160.00724.2300.6900.6900.0000.0000.0000.000
39A41ALA00.0340.01622.0780.6570.6570.0000.0000.0000.000
40A42VAL00.0190.01020.6810.7410.7410.0000.0000.0000.000
41A43ALA00.0150.00719.7840.7460.7460.0000.0000.0000.000
42A44LYS10.9370.97517.044-15.505-15.5050.0000.0000.0000.000
43A45HIS00.0500.02216.1531.8601.8600.0000.0000.0000.000
44A46LEU00.0010.01114.9381.1321.1320.0000.0000.0000.000
45A47LYS10.8580.91514.423-17.753-17.7530.0000.0000.0000.000
46A48ILE0-0.049-0.02511.3031.3121.3120.0000.0000.0000.000
47A49MET00.0310.01410.3241.8031.8030.0000.0000.0000.000
48A50GLU-1-0.767-0.82410.12321.59021.5900.0000.0000.0000.000
49A51ARG10.8960.9419.117-20.526-20.5260.0000.0000.0000.000
50A52GLU-1-0.864-0.9205.93236.61736.6170.0000.0000.0000.000
51A53GLY00.0550.0285.4714.1184.1180.0000.0000.0000.000
52A54VAL0-0.0010.0027.172-1.232-1.2320.0000.0000.0000.000
53A55LEU0-0.073-0.0379.623-2.522-2.5220.0000.0000.0000.000
54A56GLN00.0250.00911.3923.2493.2490.0000.0000.0000.000
55A57SER0-0.106-0.08614.004-1.940-1.9400.0000.0000.0000.000
56A58TYR00.0310.00916.7320.0000.0000.0000.0000.0000.000
57A59GLU-1-0.861-0.92820.30913.73513.7350.0000.0000.0000.000
58A60LYS10.9360.97123.704-10.441-10.4410.0000.0000.0000.000
59A61GLU-1-0.735-0.89227.27910.15910.1590.0000.0000.0000.000
60A62GLU-1-0.927-0.95930.4268.9108.9100.0000.0000.0000.000
61A63ARG10.7800.87833.621-9.158-9.1580.0000.0000.0000.000
62A64PHE0-0.0060.00827.224-0.009-0.0090.0000.0000.0000.000
63A65ILE00.0010.00431.388-0.273-0.2730.0000.0000.0000.000
64A66GLY00.0790.03932.196-0.399-0.3990.0000.0000.0000.000
65A67PRO0-0.040-0.00531.9610.3560.3560.0000.0000.0000.000
66A68THR0-0.0200.00526.9480.0620.0620.0000.0000.0000.000
67A69LYS10.9260.95427.560-9.812-9.8120.0000.0000.0000.000
68A70LYS10.8520.91818.986-15.526-15.5260.0000.0000.0000.000
69A71TYR0-0.029-0.01622.210-0.202-0.2020.0000.0000.0000.000
70A72TYR00.035-0.00516.1240.6680.6680.0000.0000.0000.000
71A73LYS10.9110.97316.793-16.365-16.3650.0000.0000.0000.000
72A74ILE00.0240.00513.1670.8520.8520.0000.0000.0000.000
73A75SER0-0.034-0.01910.104-1.798-1.7980.0000.0000.0000.000
74A76ILE0-0.0180.0027.3161.4891.4890.0000.0000.0000.000
75A77ALA00.0260.00710.577-1.909-1.9090.0000.0000.0000.000
76A78LYS10.8240.8995.406-33.016-33.0160.0000.0000.0000.000
77A79SER00.0520.04210.571-0.495-0.4950.0000.0000.0000.000
78A80TYR0-0.025-0.0315.3181.1931.1930.0000.0000.0000.000
79A81VAL00.0240.02410.894-1.135-1.1350.0000.0000.0000.000
80A82PHE00.012-0.00411.9081.1211.1210.0000.0000.0000.000
81A83THR0-0.024-0.01113.946-0.968-0.9680.0000.0000.0000.000
82A84LEU0-0.011-0.00716.7860.5580.5580.0000.0000.0000.000
83A85THR0-0.0120.00219.170-0.329-0.3290.0000.0000.0000.000
84A86PRO00.011-0.00722.2430.3520.3520.0000.0000.0000.000
85A87GLU-1-0.893-0.93524.25510.10510.1050.0000.0000.0000.000
86A88MET0-0.047-0.01919.4600.4240.4240.0000.0000.0000.000
87A89PHE00.005-0.00612.4570.0690.0690.0000.0000.0000.000
88A90TRP0-0.0030.01013.3110.7910.7910.0000.0000.0000.000
89A91TYR00.023-0.0086.4610.2430.2430.0000.0000.0000.000
90A92LYS10.9440.9789.297-18.459-18.4590.0000.0000.0000.000
91A93GLY00.0020.0137.044-0.615-0.6150.0000.0000.0000.000
92A94LEU0-0.056-0.0398.085-0.130-0.1300.0000.0000.0000.000
93A95ASP-1-0.819-0.9008.51429.42429.4240.0000.0000.0000.000
94A96LEU0-0.0150.00010.929-1.359-1.3590.0000.0000.0000.000
95A97GLY0-0.027-0.02914.1931.0461.0460.0000.0000.0000.000
96A98ASP-1-0.911-0.94716.89612.52512.5250.0000.0000.0000.000
97A99ALA0-0.048-0.02519.5810.3600.3600.0000.0000.0000.000
98A100GLU-1-0.851-0.91121.21612.33912.3390.0000.0000.0000.000
99A101LEU0-0.063-0.03824.0630.0020.0020.0000.0000.0000.000
100A102ARG10.7960.88021.317-12.571-12.5710.0000.0000.0000.000
101A103ASP-1-0.912-0.94926.7049.5039.5030.0000.0000.0000.000
102A104PHE0-0.033-0.02922.3550.3030.3030.0000.0000.0000.000
103A105GLU-1-0.869-0.90227.5588.7288.7280.0000.0000.0000.000
104A106ILE0-0.011-0.00924.7580.2510.2510.0000.0000.0000.000
105A107SER0-0.001-0.02328.269-0.134-0.1340.0000.0000.0000.000
106A108LEU0-0.049-0.04126.495-0.048-0.0480.0000.0000.0000.000
107A109SER0-0.0360.00830.464-0.105-0.1050.0000.0000.0000.000
108A110GLY0-0.013-0.01234.283-0.080-0.0800.0000.0000.0000.000
109A111LEU0-0.050-0.03328.1170.0700.0700.0000.0000.0000.000
110A112ASP-1-0.857-0.94232.4307.5977.5970.0000.0000.0000.000
111A113THR0-0.065-0.04133.2900.2070.2070.0000.0000.0000.000
112A114GLU-1-0.992-0.98735.4547.2647.2640.0000.0000.0000.000
113A115PRO0-0.0180.01233.545-0.104-0.1040.0000.0000.0000.000
114A116SER00.004-0.00636.792-0.044-0.0440.0000.0000.0000.000
115A117THR0-0.093-0.08637.3970.0160.0160.0000.0000.0000.000
116A118LEU00.0720.01530.5750.1360.1360.0000.0000.0000.000
117A119LYS10.9530.98332.400-7.699-7.6990.0000.0000.0000.000
118A120GLU-1-0.792-0.84633.0687.8397.8390.0000.0000.0000.000
119A121MET00.0330.02931.0230.3050.3050.0000.0000.0000.000
120A122ILE00.0010.00227.5080.3090.3090.0000.0000.0000.000
121A123THR0-0.059-0.04328.1090.3000.3000.0000.0000.0000.000
122A124ASP-1-0.756-0.88129.2518.8628.8620.0000.0000.0000.000
123A125PHE00.0090.01521.6760.2030.2030.0000.0000.0000.000
124A126ILE0-0.051-0.02724.6650.4400.4400.0000.0000.0000.000
125A127LYS10.8220.90125.311-8.399-8.3990.0000.0000.0000.000
126A128ALA00.0560.02325.2280.1640.1640.0000.0000.0000.000
127A129ASN0-0.012-0.01121.1180.3990.3990.0000.0000.0000.000
128A130LYS10.8410.90521.335-11.792-11.7920.0000.0000.0000.000
129A131GLU-1-0.755-0.86623.38410.30310.3030.0000.0000.0000.000
130A132LEU0-0.003-0.00217.7620.2090.2090.0000.0000.0000.000
131A133GLU-1-0.875-0.92418.40113.57013.5700.0000.0000.0000.000
132A134LYS10.8030.89819.462-9.669-9.6690.0000.0000.0000.000
133A135VAL00.0200.01419.7940.1100.1100.0000.0000.0000.000
134A136LEU0-0.041-0.02614.2900.4870.4870.0000.0000.0000.000
135A137GLU-1-0.771-0.85716.72415.31315.3130.0000.0000.0000.000
136A138ALA00.0270.02918.5670.0600.0600.0000.0000.0000.000
137A139PHE0-0.026-0.03114.5590.1250.1250.0000.0000.0000.000
138A140LYS10.8720.91614.406-15.406-15.4060.0000.0000.0000.000
139A141THR0-0.0060.00216.5390.1580.1580.0000.0000.0000.000
140A142ILE0-0.005-0.00620.094-0.108-0.1080.0000.0000.0000.000
141A143GLU-1-0.811-0.88217.04513.24913.2490.0000.0000.0000.000
142A144SER0-0.013-0.01117.3380.4470.4470.0000.0000.0000.000
143A145TYR00.0050.01718.829-0.234-0.2340.0000.0000.0000.000
144A146ARG10.8670.90820.966-12.555-12.5550.0000.0000.0000.000
145A147SER0-0.0240.00417.849-0.428-0.4280.0000.0000.0000.000
146A148SER0-0.007-0.02320.616-0.221-0.2210.0000.0000.0000.000
147A149LEU0-0.060-0.02722.880-0.400-0.4000.0000.0000.0000.000
148A150MET00.0440.02722.932-0.478-0.4780.0000.0000.0000.000
149A151ARG10.8260.90023.196-12.279-12.2790.0000.0000.0000.000
150A152LYS10.9530.97825.033-11.264-11.2640.0000.0000.0000.000
151A153ILE00.0410.02828.117-0.336-0.3360.0000.0000.0000.000
152A154LYS10.7990.87324.189-12.426-12.4260.0000.0000.0000.000
153A155GLU-1-0.810-0.87827.86110.59710.5970.0000.0000.0000.000
154A156ALA00.0090.00630.368-0.249-0.2490.0000.0000.0000.000
155A157TYR00.034-0.01832.586-0.210-0.2100.0000.0000.0000.000
156A158LEU0-0.033-0.02030.342-0.208-0.2080.0000.0000.0000.000
157A159LYS10.8190.88431.443-9.868-9.8680.0000.0000.0000.000
158A160GLU-1-0.964-0.96336.0867.8507.8500.0000.0000.0000.000
159A161ILE0-0.033-0.00737.021-0.228-0.2280.0000.0000.0000.000
160A162GLY0-0.0050.01036.332-0.138-0.1380.0000.0000.0000.000
161A163ASP-1-0.839-0.91036.0648.4238.4230.0000.0000.0000.000
162A164MET0-0.029-0.00231.6450.3900.3900.0000.0000.0000.000
163A165THR00.010-0.01432.926-0.248-0.2480.0000.0000.0000.000
164A166GLN00.0170.02333.5040.1910.1910.0000.0000.0000.000
165A167LEU00.0180.01029.2920.1580.1580.0000.0000.0000.000
166A168ALA0-0.013-0.00528.8720.2890.2890.0000.0000.0000.000
167A169ILE0-0.011-0.00229.2470.2110.2110.0000.0000.0000.000
168A170LEU00.0180.01130.5780.1110.1110.0000.0000.0000.000
169A171HIS0-0.016-0.02422.612-0.153-0.1530.0000.0000.0000.000
170A172TYR00.005-0.00425.8390.4260.4260.0000.0000.0000.000
171A173LEU00.0280.00927.1050.1290.1290.0000.0000.0000.000
172A174LEU0-0.0100.00727.005-0.098-0.0980.0000.0000.0000.000
173A175LEU0-0.101-0.04821.5630.3740.3740.0000.0000.0000.000
174A176ASN0-0.061-0.02424.1770.3560.3560.0000.0000.0000.000
175A177GLY00.0460.02526.724-0.216-0.2160.0000.0000.0000.000
176A178ARG10.8820.92929.936-8.892-8.8920.0000.0000.0000.000
177A179ALA00.0230.02230.4770.3450.3450.0000.0000.0000.000
178A180THR0-0.011-0.02132.504-0.304-0.3040.0000.0000.0000.000
179A181VAL0-0.010-0.02434.6160.1980.1980.0000.0000.0000.000
180A182GLU-1-0.831-0.89935.1968.4678.4670.0000.0000.0000.000
181A183GLU-1-0.833-0.89730.7969.2309.2300.0000.0000.0000.000
182A184LEU0-0.007-0.00731.1770.2930.2930.0000.0000.0000.000
183A185SER0-0.070-0.05133.0190.0820.0820.0000.0000.0000.000
184A186ASP-1-0.730-0.85031.3149.6709.6700.0000.0000.0000.000
185A187ARG10.8490.92123.986-11.185-11.1850.0000.0000.0000.000
186A188LEU0-0.009-0.01429.4750.3510.3510.0000.0000.0000.000
187A189ASN0-0.089-0.04530.277-0.116-0.1160.0000.0000.0000.000
188A190LEU00.0060.02634.069-0.189-0.1890.0000.0000.0000.000
189A191LYS10.8710.92937.213-7.331-7.3310.0000.0000.0000.000
190A192GLU-1-0.757-0.88439.0547.4567.4560.0000.0000.0000.000
191A193ARG10.7770.87240.593-6.782-6.7820.0000.0000.0000.000
192A194GLU-1-0.722-0.85640.1487.3977.3970.0000.0000.0000.000
193A195VAL0-0.0160.00636.4820.0430.0430.0000.0000.0000.000
194A196ARG10.8180.88038.982-7.129-7.1290.0000.0000.0000.000
195A197GLU-1-0.838-0.86541.8036.7026.7020.0000.0000.0000.000
196A198LYS10.8390.88937.909-7.806-7.8060.0000.0000.0000.000
197A199ILE00.004-0.00337.4500.0710.0710.0000.0000.0000.000
198A200SER0-0.072-0.04939.719-0.090-0.0900.0000.0000.0000.000
199A201GLU-1-0.835-0.89541.2137.4107.4100.0000.0000.0000.000
200A202MET0-0.005-0.00434.2200.0100.0100.0000.0000.0000.000
201A203ALA00.0090.00939.5900.0310.0310.0000.0000.0000.000
202A204ARG10.8760.96041.799-6.775-6.7750.0000.0000.0000.000
203A205PHE0-0.030-0.03039.315-0.121-0.1210.0000.0000.0000.000
204A206VAL00.0020.00035.1420.1810.1810.0000.0000.0000.000
205A207PRO00.0220.01838.345-0.089-0.0890.0000.0000.0000.000
206A208VAL00.0020.00536.6400.2160.2160.0000.0000.0000.000
207A209LYS10.8630.92938.969-7.330-7.3300.0000.0000.0000.000
208A210ILE0-0.022-0.00639.4590.1920.1920.0000.0000.0000.000
209A211ILE00.009-0.00638.880-0.176-0.1760.0000.0000.0000.000
210A212ASN00.014-0.01540.8150.0020.0020.0000.0000.0000.000
211A213ASP-1-0.864-0.91043.4156.4796.4790.0000.0000.0000.000
212A214ASN00.0010.00139.3690.0380.0380.0000.0000.0000.000
213A215THR0-0.016-0.00736.1460.2910.2910.0000.0000.0000.000
214A216VAL0-0.009-0.00235.416-0.203-0.2030.0000.0000.0000.000
215A217VAL00.031-0.00234.7450.2810.2810.0000.0000.0000.000
216A218LEU00.0400.02831.579-0.181-0.1810.0000.0000.0000.000
217A219ASP-1-0.840-0.92535.6677.0837.0830.0000.0000.0000.000
218A220GLU-1-0.911-0.96834.1428.3738.3730.0000.0000.0000.000
219A221ASP-1-0.874-0.92537.3047.0987.0980.0000.0000.0000.000
220A222GLN0-0.029-0.02240.978-0.073-0.0730.0000.0000.0000.000
221A223ILE0-0.046-0.02435.1100.0000.0000.0000.0000.0000.000
222A224LEU0-0.040-0.01034.8720.1090.1090.0000.0000.0000.000
223A225ARG10.7990.91739.028-7.355-7.3550.0000.0000.0000.000