FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 9LJ42

Calculation Name: 2C0Z-A-Xray547

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 2C0Z

Chain ID: A

ChEMBL ID:

UniProt ID: Q9L9E5

Base Structure: X-ray

Registration Date: 2025-10-03

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 199
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2154487.522749
FMO2-HF: Nuclear repulsion 2078446.258301
FMO2-HF: Total energy -76041.264448
FMO2-MP2: Total energy -76263.617145


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:-8:SER)


Summations of interaction energy for fragment #1(A:-8:SER)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-59.327-56.966.276-4.203-4.44-0.039
Interaction energy analysis for fragmet #1(A:-8:SER)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.839 / q_NPA : 0.909
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A-6LEU00.0090.0011.988-21.154-19.4305.322-3.669-3.377-0.034
4A-5VAL00.0130.0072.333-0.5360.0890.955-0.527-1.053-0.005
5A-4PRO00.0160.0244.9282.8212.839-0.001-0.007-0.0100.000
6A-3ARG10.9510.9708.78317.64217.6420.0000.0000.0000.000
7A-2GLY00.0280.02911.3600.7010.7010.0000.0000.0000.000
8A-1SER0-0.097-0.06813.1270.3120.3120.0000.0000.0000.000
9A0HIS00.0640.03816.8840.0130.0130.0000.0000.0000.000
10A1MET00.0280.03120.3650.2500.2500.0000.0000.0000.000
11A2ARG10.8780.93622.49512.81112.8110.0000.0000.0000.000
12A3LEU00.0600.04724.725-0.318-0.3180.0000.0000.0000.000
13A4ARG10.8680.92427.04410.37110.3710.0000.0000.0000.000
14A5PRO00.0310.04029.249-0.196-0.1960.0000.0000.0000.000
15A6LEU0-0.038-0.02327.843-0.228-0.2280.0000.0000.0000.000
16A7GLY0-0.011-0.00931.8590.2480.2480.0000.0000.0000.000
17A8ILE0-0.0140.00434.5800.2910.2910.0000.0000.0000.000
18A9GLU-1-0.812-0.87635.905-7.599-7.5990.0000.0000.0000.000
19A10GLY00.0370.01736.8390.0880.0880.0000.0000.0000.000
20A11VAL00.0000.01631.242-0.131-0.1310.0000.0000.0000.000
21A12TRP00.002-0.00730.026-0.101-0.1010.0000.0000.0000.000
22A13GLU-1-0.793-0.86922.919-13.242-13.2420.0000.0000.0000.000
23A14ILE0-0.029-0.02223.4290.1910.1910.0000.0000.0000.000
24A15THR0-0.068-0.03919.095-0.643-0.6430.0000.0000.0000.000
25A16PRO00.0890.03917.2520.5970.5970.0000.0000.0000.000
26A17GLU-1-0.952-0.96018.514-14.603-14.6030.0000.0000.0000.000
27A18GLN0-0.029-0.02812.650-0.317-0.3170.0000.0000.0000.000
28A19ARG10.9720.98012.50217.85517.8550.0000.0000.0000.000
29A20ALA00.0290.0097.426-0.238-0.2380.0000.0000.0000.000
30A21ASP-1-0.818-0.8888.440-25.063-25.0630.0000.0000.0000.000
31A22PRO0-0.030-0.0385.613-2.520-2.5200.0000.0000.0000.000
32A23ARG10.8430.9156.42422.14922.1490.0000.0000.0000.000
33A24GLY00.0000.0108.2111.1271.1270.0000.0000.0000.000
34A25VAL0-0.018-0.0148.630-1.103-1.1030.0000.0000.0000.000
35A26PHE0-0.042-0.01610.9081.0571.0570.0000.0000.0000.000
36A27LEU0-0.012-0.02314.454-0.481-0.4810.0000.0000.0000.000
37A28ASP-1-0.854-0.89716.929-13.699-13.6990.0000.0000.0000.000
38A29TRP00.010-0.02419.9550.1840.1840.0000.0000.0000.000
39A30TYR00.0360.02421.6110.5030.5030.0000.0000.0000.000
40A31HIS00.0030.00125.298-0.123-0.1230.0000.0000.0000.000
41A32VAL00.0230.01527.3400.1450.1450.0000.0000.0000.000
42A33ASP-1-0.850-0.92431.151-9.300-9.3000.0000.0000.0000.000
43A34ARG10.8330.90325.43311.31711.3170.0000.0000.0000.000
44A35PHE00.0150.00629.832-0.027-0.0270.0000.0000.0000.000
45A36ALA0-0.017-0.01131.2720.1940.1940.0000.0000.0000.000
46A37GLU-1-0.929-0.96233.718-8.199-8.1990.0000.0000.0000.000
47A38ALA0-0.089-0.03231.9750.1040.1040.0000.0000.0000.000
48A39ILE0-0.046-0.02731.9250.1240.1240.0000.0000.0000.000
49A40GLY00.0290.03335.7180.2250.2250.0000.0000.0000.000
50A41ARG10.8320.89736.3558.4558.4550.0000.0000.0000.000
51A42PRO00.0320.00434.926-0.246-0.2460.0000.0000.0000.000
52A43LEU0-0.0240.00030.6630.2060.2060.0000.0000.0000.000
53A44ARG10.8640.92534.3077.7137.7130.0000.0000.0000.000
54A45LEU00.0010.00031.685-0.100-0.1000.0000.0000.0000.000
55A46ALA0-0.030-0.00535.0250.1740.1740.0000.0000.0000.000
56A47GLN00.004-0.01534.6870.3190.3190.0000.0000.0000.000
57A48ALA00.0180.01529.633-0.175-0.1750.0000.0000.0000.000
58A49ASN0-0.0210.00129.9050.3440.3440.0000.0000.0000.000
59A50LEU00.0390.01124.107-0.396-0.3960.0000.0000.0000.000
60A51SER00.0290.01826.5400.5430.5430.0000.0000.0000.000
61A52VAL0-0.0090.00724.106-0.476-0.4760.0000.0000.0000.000
62A53SER0-0.030-0.02225.2570.6950.6950.0000.0000.0000.000
63A54VAL00.0530.03024.927-0.574-0.5740.0000.0000.0000.000
64A55ARG10.8330.88518.92015.24815.2480.0000.0000.0000.000
65A56GLY0-0.0060.00225.3220.3750.3750.0000.0000.0000.000
66A57VAL0-0.0120.00728.1080.4430.4430.0000.0000.0000.000
67A58VAL0-0.018-0.01129.027-0.360-0.3600.0000.0000.0000.000
68A59ARG10.8040.90931.3159.9529.9520.0000.0000.0000.000
69A60GLY0-0.008-0.00432.684-0.264-0.2640.0000.0000.0000.000
70A61ILE00.0030.01935.0640.0450.0450.0000.0000.0000.000
71A62HIS0-0.033-0.04236.3070.0530.0530.0000.0000.0000.000
72A63PHE00.0270.01837.377-0.247-0.2470.0000.0000.0000.000
73A64VAL0-0.009-0.00639.6340.0660.0660.0000.0000.0000.000
74A65ASP-1-0.790-0.87142.011-6.886-6.8860.0000.0000.0000.000
75A66VAL0-0.0040.00043.647-0.100-0.1000.0000.0000.0000.000
76A67PRO0-0.003-0.00246.3730.1060.1060.0000.0000.0000.000
77A68PRO0-0.015-0.01344.7130.0620.0620.0000.0000.0000.000
78A69GLY00.0330.01043.019-0.037-0.0370.0000.0000.0000.000
79A70GLN0-0.055-0.02136.864-0.245-0.2450.0000.0000.0000.000
80A71ALA00.0150.03135.847-0.014-0.0140.0000.0000.0000.000
81A72LYS10.8790.91231.9349.2129.2120.0000.0000.0000.000
82A73TYR0-0.030-0.03325.0870.1140.1140.0000.0000.0000.000
83A74VAL00.0070.01326.042-0.139-0.1390.0000.0000.0000.000
84A75THR00.007-0.01721.115-0.424-0.4240.0000.0000.0000.000
85A76CYS0-0.0370.00319.6500.0880.0880.0000.0000.0000.000
86A77VAL0-0.009-0.00618.090-0.747-0.7470.0000.0000.0000.000
87A78ARG10.9550.96516.31215.65315.6530.0000.0000.0000.000
88A79GLY00.0150.01216.0081.1131.1130.0000.0000.0000.000
89A80ALA0-0.012-0.03217.063-0.479-0.4790.0000.0000.0000.000
90A81VAL00.0170.00719.0310.4020.4020.0000.0000.0000.000
91A82PHE00.0030.00022.375-0.506-0.5060.0000.0000.0000.000
92A83ASP-1-0.834-0.91825.031-10.934-10.9340.0000.0000.0000.000
93A84VAL00.0150.00826.976-0.026-0.0260.0000.0000.0000.000
94A85VAL0-0.0080.01130.4990.1790.1790.0000.0000.0000.000
95A86VAL00.0700.01033.0970.0190.0190.0000.0000.0000.000
96A87ASP-1-0.725-0.79636.717-7.627-7.6270.0000.0000.0000.000
97A88LEU00.0050.00539.6320.1660.1660.0000.0000.0000.000
98A89ARG10.8010.87739.6437.9827.9820.0000.0000.0000.000
99A90VAL00.0490.00644.5560.0360.0360.0000.0000.0000.000
100A91GLY0-0.024-0.01747.8300.0920.0920.0000.0000.0000.000
101A92SER0-0.014-0.01842.1930.0630.0630.0000.0000.0000.000
102A93PRO0-0.034-0.02143.4740.0370.0370.0000.0000.0000.000
103A94THR0-0.024-0.02738.906-0.036-0.0360.0000.0000.0000.000
104A95TYR0-0.015-0.00940.992-0.088-0.0880.0000.0000.0000.000
105A96GLY0-0.0010.00042.0460.0760.0760.0000.0000.0000.000
106A97CYS0-0.045-0.00737.958-0.097-0.0970.0000.0000.0000.000
107A98TRP0-0.026-0.01530.545-0.274-0.2740.0000.0000.0000.000
108A99GLU-1-0.846-0.93030.189-9.780-9.7800.0000.0000.0000.000
109A100GLY00.0240.01128.697-0.060-0.0600.0000.0000.0000.000
110A101THR0-0.028-0.01123.644-0.200-0.2000.0000.0000.0000.000
111A102ARG10.8510.91316.12016.68016.6800.0000.0000.0000.000
112A103LEU00.0000.01820.565-0.415-0.4150.0000.0000.0000.000
113A104ASP-1-0.762-0.88215.731-18.896-18.8960.0000.0000.0000.000
114A105ASP-1-0.856-0.90613.534-22.413-22.4130.0000.0000.0000.000
115A106VAL0-0.025-0.01410.127-2.014-2.0140.0000.0000.0000.000
116A107SER0-0.097-0.08412.431-0.153-0.1530.0000.0000.0000.000
117A108ARG10.8110.91112.69921.76921.7690.0000.0000.0000.000
118A109ARG10.8740.93117.00815.14715.1470.0000.0000.0000.000
119A110ALA00.0080.01520.341-0.152-0.1520.0000.0000.0000.000
120A111VAL00.0300.01723.6350.0640.0640.0000.0000.0000.000
121A112TYR00.0080.00027.1820.0410.0410.0000.0000.0000.000
122A113LEU00.0080.00330.4320.0360.0360.0000.0000.0000.000
123A114SER00.004-0.02333.6160.0670.0670.0000.0000.0000.000
124A115GLU-1-0.814-0.90937.080-8.039-8.0390.0000.0000.0000.000
125A116GLY00.0510.01040.1770.0970.0970.0000.0000.0000.000
126A117ILE0-0.095-0.02635.1820.0390.0390.0000.0000.0000.000
127A118GLY0-0.0080.00537.6490.0060.0060.0000.0000.0000.000
128A119HIS0-0.016-0.03529.0940.0750.0750.0000.0000.0000.000
129A120GLY00.0490.00732.3940.2500.2500.0000.0000.0000.000
130A121PHE0-0.072-0.02426.901-0.312-0.3120.0000.0000.0000.000
131A122CYS00.0420.03726.4320.3350.3350.0000.0000.0000.000
132A123ALA0-0.0290.00324.175-0.543-0.5430.0000.0000.0000.000
133A124ILE00.002-0.00119.6660.0610.0610.0000.0000.0000.000
134A125SER0-0.074-0.06518.006-0.297-0.2970.0000.0000.0000.000
135A126ASP-1-0.849-0.92719.781-14.863-14.8630.0000.0000.0000.000
136A127GLU-1-0.897-0.94220.655-12.891-12.8910.0000.0000.0000.000
137A128ALA0-0.0170.03420.184-1.061-1.0610.0000.0000.0000.000
138A129THR0-0.034-0.03620.8850.4470.4470.0000.0000.0000.000
139A130LEU00.0210.03221.531-0.702-0.7020.0000.0000.0000.000
140A131CYS0-0.052-0.02623.5280.3690.3690.0000.0000.0000.000
141A132TYR00.030-0.00225.1980.0280.0280.0000.0000.0000.000
142A133LEU0-0.030-0.00727.6070.1100.1100.0000.0000.0000.000
143A134SER00.0390.02030.5980.0300.0300.0000.0000.0000.000
144A135SER00.0460.03134.2580.0900.0900.0000.0000.0000.000
145A136GLY00.0330.01437.2220.2650.2650.0000.0000.0000.000
146A137THR0-0.007-0.01138.126-0.210-0.2100.0000.0000.0000.000
147A138TYR0-0.038-0.02238.4670.0730.0730.0000.0000.0000.000
148A139ASP-1-0.794-0.89740.168-6.807-6.8070.0000.0000.0000.000
149A140PRO0-0.052-0.01543.827-0.043-0.0430.0000.0000.0000.000
150A141ALA0-0.027-0.00945.1680.0820.0820.0000.0000.0000.000
151A142THR0-0.028-0.03045.0370.0030.0030.0000.0000.0000.000
152A143GLU-1-0.883-0.91238.592-8.444-8.4440.0000.0000.0000.000
153A144HIS10.8170.88942.4857.0277.0270.0000.0000.0000.000
154A145GLY0-0.003-0.03341.245-0.260-0.2600.0000.0000.0000.000
155A146VAL0-0.0070.01740.5510.2050.2050.0000.0000.0000.000
156A147HIS00.0270.01740.075-0.387-0.3870.0000.0000.0000.000
157A148PRO0-0.011-0.00235.399-0.043-0.0430.0000.0000.0000.000
158A149LEU0-0.063-0.03335.715-0.237-0.2370.0000.0000.0000.000
159A150ASP-1-0.723-0.85338.769-7.150-7.1500.0000.0000.0000.000
160A151PRO0-0.035-0.01940.601-0.147-0.1470.0000.0000.0000.000
161A152GLU-1-0.921-0.97043.030-6.749-6.7490.0000.0000.0000.000
162A153LEU0-0.061-0.02638.156-0.119-0.1190.0000.0000.0000.000
163A154ALA0-0.033-0.02338.169-0.163-0.1630.0000.0000.0000.000
164A155ILE0-0.0120.00232.423-0.168-0.1680.0000.0000.0000.000
165A156ASP-1-0.892-0.93931.260-9.279-9.2790.0000.0000.0000.000
166A157TRP0-0.043-0.04229.557-0.705-0.7050.0000.0000.0000.000
167A158PRO0-0.047-0.01925.2040.0520.0520.0000.0000.0000.000
168A159THR0-0.061-0.05226.691-0.392-0.3920.0000.0000.0000.000
169A160GLY00.0210.02329.3540.2710.2710.0000.0000.0000.000
170A161THR0-0.055-0.03231.7140.3110.3110.0000.0000.0000.000
171A162PRO00.0110.01432.157-0.293-0.2930.0000.0000.0000.000
172A163LEU0-0.024-0.01930.7430.3140.3140.0000.0000.0000.000
173A164LEU00.0590.03533.414-0.213-0.2130.0000.0000.0000.000
174A165SER0-0.049-0.02736.1360.1860.1860.0000.0000.0000.000
175A166PRO00.0510.00037.6690.0660.0660.0000.0000.0000.000
176A167ARG10.8240.90838.9778.2438.2430.0000.0000.0000.000
177A168ASP-1-0.757-0.87136.510-8.584-8.5840.0000.0000.0000.000
178A169GLN0-0.120-0.06639.0230.1780.1780.0000.0000.0000.000
179A170ASP-1-0.907-0.95441.734-6.990-6.9900.0000.0000.0000.000
180A171ALA0-0.060-0.01742.2570.1440.1440.0000.0000.0000.000
181A172LEU00.0190.01244.2310.0500.0500.0000.0000.0000.000
182A173LEU00.013-0.00544.526-0.233-0.2330.0000.0000.0000.000
183A174LEU0-0.033-0.01542.7740.0750.0750.0000.0000.0000.000
184A175ALA00.0230.00645.3750.1100.1100.0000.0000.0000.000
185A176GLU-1-0.874-0.93148.742-6.396-6.3960.0000.0000.0000.000
186A177ALA00.0140.00146.7370.1060.1060.0000.0000.0000.000
187A178ARG10.9000.95348.6566.3836.3830.0000.0000.0000.000
188A179ASP-1-0.979-0.98150.132-5.655-5.6550.0000.0000.0000.000
189A180ALA0-0.028-0.01352.0190.1130.1130.0000.0000.0000.000
190A181GLY0-0.032-0.01552.8960.0330.0330.0000.0000.0000.000
191A182LEU0-0.057-0.03048.969-0.023-0.0230.0000.0000.0000.000
192A183LEU0-0.037-0.00644.717-0.180-0.1800.0000.0000.0000.000
193A184PRO0-0.0050.00243.6100.1310.1310.0000.0000.0000.000
194A185THR0-0.008-0.01346.878-0.001-0.0010.0000.0000.0000.000
195A186TYR0-0.042-0.06143.5420.0040.0040.0000.0000.0000.000
196A187ALA00.0360.01346.942-0.055-0.0550.0000.0000.0000.000
197A188THR0-0.068-0.01948.6080.0630.0630.0000.0000.0000.000
198A189CYS0-0.092-0.05343.406-0.093-0.0930.0000.0000.0000.000
199A190GLN-1-0.963-0.94444.127-6.779-6.7790.0000.0000.0000.000