FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 9M282

Calculation Name: 1TS9-A-Xray540

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 1TS9

Chain ID: A

ChEMBL ID:

UniProt ID: O28362

Base Structure: X-ray

Registration Date: 2025-07-08

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 184
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -751335.586599
FMO2-HF: Nuclear repulsion 711617.169951
FMO2-HF: Total energy -39718.416648
FMO2-MP2: Total energy -39832.938403


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:5:LEU)


Summations of interaction energy for fragment #1(A:5:LEU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-7.047-3.140.245-1.849-2.3040.009
Interaction energy analysis for fragmet #1(A:5:LEU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.166 / q_NPA : 0.036
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4A6GLN0-0.0770.1003.822-0.465-0.111-0.001-0.089-0.2640.000
5A7GLY00.010-0.0913.388-3.409-0.9490.021-1.393-1.0880.009
6A8VAL00.114-0.0123.187-1.076-0.6870.010-0.105-0.2940.000
7A8VAL0-0.0780.1122.564-0.4470.0400.221-0.209-0.5000.000
8A9GLU00.114-0.0384.8290.0420.131-0.002-0.022-0.0660.000
9A9GLU-1-0.983-0.8955.842-1.039-1.0390.0000.0000.0000.000
10A10LEU0-0.030-0.1286.758-0.062-0.0620.0000.0000.0000.000
11A10LEU0-0.0360.1088.3380.0550.0550.0000.0000.0000.000
12A11ILE00.072-0.0958.304-0.005-0.0050.0000.0000.0000.000
13A11ILE0-0.0670.0987.6690.0070.0070.0000.0000.0000.000
14A12ALA00.097-0.1079.8840.0270.0270.0000.0000.0000.000
15A12ALA0-0.0850.11510.395-0.020-0.0200.0000.0000.0000.000
16A13ARG00.075-0.08411.150-0.016-0.0160.0000.0000.0000.000
17A13ARG10.8041.03811.5850.0880.0880.0000.0000.0000.000
18A14ASP00.002-0.10213.0120.0820.0820.0000.0000.0000.000
19A14ASP-1-0.864-0.80617.702-0.026-0.0260.0000.0000.0000.000
20A15TRP00.018-0.14415.340-0.030-0.0300.0000.0000.0000.000
21A15TRP0-0.1380.04611.9610.0490.0490.0000.0000.0000.000
22A16ILE00.148-0.12516.4620.0290.0290.0000.0000.0000.000
23A16ILE0-0.0860.14820.2120.0010.0010.0000.0000.0000.000
24A17GLY0-0.027-0.09918.659-0.028-0.0280.0000.0000.0000.000
25A18LEU0-0.007-0.02716.093-0.023-0.0230.0000.0000.0000.000
26A18LEU0-0.0870.08713.3660.0080.0080.0000.0000.0000.000
27A19MET00.194-0.05417.301-0.003-0.0030.0000.0000.0000.000
28A19MET0-0.1110.10818.0500.0010.0010.0000.0000.0000.000
29A20VAL0-0.003-0.14716.6640.0580.0580.0000.0000.0000.000
30A20VAL0-0.0350.11416.1420.0080.0080.0000.0000.0000.000
31A21GLU00.198-0.07917.821-0.048-0.0480.0000.0000.0000.000
32A21GLU-1-0.946-0.82318.9430.3120.3120.0000.0000.0000.000
33A22VAL0-0.015-0.14018.5790.0670.0670.0000.0000.0000.000
34A22VAL0-0.0620.13021.256-0.003-0.0030.0000.0000.0000.000
35A23VAL00.014-0.09819.269-0.035-0.0350.0000.0000.0000.000
36A23VAL0-0.1190.07017.2270.0130.0130.0000.0000.0000.000
37A24GLU00.089-0.13420.242-0.018-0.0180.0000.0000.0000.000
38A24GLU-1-0.885-0.75618.7140.4590.4590.0000.0000.0000.000
39A25SER00.049-0.09821.2350.0180.0180.0000.0000.0000.000
40A25SER0-0.0040.05223.305-0.005-0.0050.0000.0000.0000.000
41A26PRO0-0.058-0.08723.726-0.008-0.0080.0000.0000.0000.000
42A27ASN00.1540.06026.601-0.014-0.0140.0000.0000.0000.000
43A27ASN0-0.1490.04827.575-0.004-0.0040.0000.0000.0000.000
44A28HIS00.124-0.09227.7520.0100.0100.0000.0000.0000.000
45A28HIS0-0.0400.11029.001-0.006-0.0060.0000.0000.0000.000
46A29SER00.063-0.09228.5040.0110.0110.0000.0000.0000.000
47A29SER0-0.0420.08730.984-0.004-0.0040.0000.0000.0000.000
48A30GLU00.003-0.12326.284-0.009-0.0090.0000.0000.0000.000
49A30GLU-1-0.830-0.75325.4120.1890.1890.0000.0000.0000.000
50A31VAL00.083-0.12224.4340.0130.0130.0000.0000.0000.000
51A31VAL0-0.0540.13124.0240.0020.0020.0000.0000.0000.000
52A32GLY0-0.024-0.09724.010-0.018-0.0180.0000.0000.0000.000
53A33ILE00.081-0.00625.257-0.010-0.0100.0000.0000.0000.000
54A33ILE0-0.0990.10024.254-0.003-0.0030.0000.0000.0000.000
55A34LYS00.107-0.11022.4170.0290.0290.0000.0000.0000.000
56A34LYS10.8201.06820.755-0.226-0.2260.0000.0000.0000.000
57A35GLY0-0.015-0.11822.021-0.023-0.0230.0000.0000.0000.000
58A36GLU00.154-0.01121.3710.0350.0350.0000.0000.0000.000
59A36GLU-1-0.976-0.81621.2730.0470.0470.0000.0000.0000.000
60A37VAL00.037-0.14420.392-0.009-0.0090.0000.0000.0000.000
61A37VAL0-0.1350.10518.6070.0060.0060.0000.0000.0000.000
62A38VAL00.058-0.11621.722-0.015-0.0150.0000.0000.0000.000
63A38VAL0-0.0640.13525.440-0.001-0.0010.0000.0000.0000.000
64A39ASP00.145-0.11323.772-0.016-0.0160.0000.0000.0000.000
65A39ASP-1-0.987-0.82825.4050.0500.0500.0000.0000.0000.000
66A40GLU00.076-0.16121.0270.0220.0220.0000.0000.0000.000
67A40GLU-1-0.856-0.72917.8600.1510.1510.0000.0000.0000.000
68A41THR0-0.019-0.06722.495-0.019-0.0190.0000.0000.0000.000
69A41THR0-0.0350.06624.9210.0040.0040.0000.0000.0000.000
70A42GLN00.218-0.08821.4100.0170.0170.0000.0000.0000.000
71A42GLN0-0.1400.11121.936-0.016-0.0160.0000.0000.0000.000
72A43ASN0-0.020-0.09521.2710.0220.0220.0000.0000.0000.000
73A43ASN0-0.1040.06024.2730.0070.0070.0000.0000.0000.000
74A44THR00.044-0.08223.2750.0180.0180.0000.0000.0000.000
75A44THR0-0.0020.07325.103-0.007-0.0070.0000.0000.0000.000
76A45LEU00.064-0.08721.331-0.014-0.0140.0000.0000.0000.000
77A45LEU0-0.0250.13418.0440.0030.0030.0000.0000.0000.000
78A46LYS00.108-0.07222.4980.0090.0090.0000.0000.0000.000
79A46LYS10.8641.06525.809-0.072-0.0720.0000.0000.0000.000
80A47ILE00.065-0.11024.109-0.008-0.0080.0000.0000.0000.000
81A47ILE0-0.0850.10421.7450.0050.0050.0000.0000.0000.000
82A48MET00.169-0.07324.928-0.002-0.0020.0000.0000.0000.000
83A48MET0-0.0700.12726.240-0.004-0.0040.0000.0000.0000.000
84A49THR0-0.029-0.08526.0720.0090.0090.0000.0000.0000.000
85A49THR0-0.0790.01026.4200.0000.0000.0000.0000.0000.000
86A50GLU00.118-0.11727.807-0.010-0.0100.0000.0000.0000.000
87A50GLU-1-1.027-0.84527.8200.1080.1080.0000.0000.0000.000
88A51LYS00.017-0.08529.820-0.009-0.0090.0000.0000.0000.000
89A51LYS10.8751.07032.678-0.090-0.0900.0000.0000.0000.000
90A52GLY00.068-0.09731.297-0.005-0.0050.0000.0000.0000.000
91A53LEU00.049-0.03329.6010.0030.0030.0000.0000.0000.000
92A53LEU0-0.0310.14529.8030.0000.0000.0000.0000.0000.000
93A54LYS00.022-0.12628.058-0.005-0.0050.0000.0000.0000.000
94A54LYS10.9121.10227.159-0.112-0.1120.0000.0000.0000.000
95A55VAL00.092-0.08626.8480.0020.0020.0000.0000.0000.000
96A55VAL0-0.0550.11627.239-0.001-0.0010.0000.0000.0000.000
97A56VAL00.027-0.13824.073-0.008-0.0080.0000.0000.0000.000
98A56VAL0-0.0520.14022.7160.0030.0030.0000.0000.0000.000
99A57ALA00.164-0.08823.5800.0010.0010.0000.0000.0000.000
100A57ALA0-0.0790.10424.915-0.002-0.0020.0000.0000.0000.000
101A58LYS00.028-0.13120.0360.0140.0140.0000.0000.0000.000
102A58LYS10.6921.00018.304-0.179-0.1790.0000.0000.0000.000
103A59ARG00.108-0.07619.9050.0370.0370.0000.0000.0000.000
104A59ARG10.8641.07521.915-0.157-0.1570.0000.0000.0000.000
105A60GLY00.019-0.09320.648-0.020-0.0200.0000.0000.0000.000
106A61ARG00.024-0.01520.1740.0030.0030.0000.0000.0000.000
107A61ARG10.7451.00620.007-0.209-0.2090.0000.0000.0000.000
108A62THR00.010-0.07416.4180.0270.0270.0000.0000.0000.000
109A62THR0-0.123-0.01315.0810.0150.0150.0000.0000.0000.000
110A63PHE00.090-0.10215.384-0.044-0.0440.0000.0000.0000.000
111A63PHE0-0.0580.11115.190-0.015-0.0150.0000.0000.0000.000
112A64ARG00.071-0.05214.0280.1350.1350.0000.0000.0000.000
113A64ARG10.8321.00514.980-0.416-0.4160.0000.0000.0000.000
114A65VAL00.054-0.12912.927-0.117-0.1170.0000.0000.0000.000
115A65VAL0-0.0610.12911.8570.0060.0060.0000.0000.0000.000
116A66TRP00.114-0.09112.2450.1820.1820.0000.0000.0000.000
117A66TRP0-0.1540.09315.3790.0010.0010.0000.0000.0000.000
118A67TYR00.116-0.10810.491-0.110-0.1100.0000.0000.0000.000
119A67TYR0-0.0810.0877.468-0.007-0.0070.0000.0000.0000.000
120A68LYS0-0.002-0.1009.7010.1690.1690.0000.0000.0000.000
121A68LYS10.8481.0428.3350.6320.6320.0000.0000.0000.000
122A69GLY00.123-0.0729.928-0.073-0.0730.0000.0000.0000.000
123A70LYS00.0610.0259.150-0.062-0.0620.0000.0000.0000.000
124A70LYS10.8451.0434.799-0.396-0.353-0.001-0.008-0.0330.000
125A71ILE00.126-0.09410.670-0.082-0.0820.0000.0000.0000.000
126A71ILE0-0.0700.11613.082-0.011-0.0110.0000.0000.0000.000
127A72MET00.011-0.0928.5640.0240.0240.0000.0000.0000.000
128A72MET0-0.1130.1016.5860.0340.0340.0000.0000.0000.000
129A73ARG00.126-0.09910.009-0.204-0.2040.0000.0000.0000.000
130A73ARG10.8431.05511.980-0.648-0.6480.0000.0000.0000.000
131A74ILE00.043-0.12410.5230.2180.2180.0000.0000.0000.000
132A74ILE0-0.0510.1258.5800.0140.0140.0000.0000.0000.000
133A75LYS00.094-0.09611.732-0.100-0.1000.0000.0000.0000.000
134A75LYS10.8901.08213.834-0.532-0.5320.0000.0000.0000.000
135A76GLY00.042-0.09514.2590.0090.0090.0000.0000.0000.000
136A77ASP00.104-0.01716.801-0.032-0.0320.0000.0000.0000.000
137A77ASP-1-0.958-0.83016.9520.2970.2970.0000.0000.0000.000
138A78LEU0-0.014-0.13912.787-0.050-0.0500.0000.0000.0000.000
139A78LEU0-0.0880.10510.3200.0230.0230.0000.0000.0000.000
140A79ILE00.039-0.12614.013-0.022-0.0220.0000.0000.0000.000
141A79ILE0-0.0730.11512.8930.0030.0030.0000.0000.0000.000
142A80ASN00.155-0.02415.332-0.037-0.0370.0000.0000.0000.000
143A80ASN0-0.1250.04219.1050.0170.0170.0000.0000.0000.000
144A81PHE00.076-0.16018.491-0.011-0.0110.0000.0000.0000.000
145A81PHE0-0.0780.10816.303-0.005-0.0050.0000.0000.0000.000
146A82ARG00.070-0.10919.3150.0040.0040.0000.0000.0000.000
147A82ARG10.9341.11821.983-0.043-0.0430.0000.0000.0000.000
148A83PRO00.075-0.08217.8460.0100.0100.0000.0000.0000.000
149A84GLU00.1460.00817.149-0.010-0.0100.0000.0000.0000.000
150A84GLU-1-0.984-0.84320.7310.0020.0020.0000.0000.0000.000
151A85ASP00.094-0.10617.798-0.020-0.0200.0000.0000.0000.000
152A85ASP-1-0.966-0.82318.2530.1050.1050.0000.0000.0000.000
153A86ARG00.086-0.13514.9240.0110.0110.0000.0000.0000.000
154A86ARG10.7461.03213.074-0.173-0.1730.0000.0000.0000.000
155A87ILE00.082-0.10313.0170.0260.0260.0000.0000.0000.000
156A87ILE0-0.0550.14113.560-0.006-0.0060.0000.0000.0000.000
157A88LYS00.098-0.08912.660-0.032-0.0320.0000.0000.0000.000
158A88LYS10.8971.08415.981-0.006-0.0060.0000.0000.0000.000
159A89ARG00.001-0.16213.198-0.008-0.0080.0000.0000.0000.000
160A89ARG10.8351.08313.008-0.168-0.1680.0000.0000.0000.000
161A90GLY00.020-0.0849.4530.0860.0860.0000.0000.0000.000
162A91LEU00.1500.0058.3120.0350.0350.0000.0000.0000.000
163A91LEU0-0.0810.1169.5080.0010.0010.0000.0000.0000.000
164A92MET00.072-0.0959.625-0.011-0.0110.0000.0000.0000.000
165A92MET0-0.1130.07812.149-0.004-0.0040.0000.0000.0000.000
166A93MET00.088-0.1107.987-0.036-0.0360.0000.0000.0000.000
167A93MET0-0.0710.1097.102-0.019-0.0190.0000.0000.0000.000
168A94LEU00.140-0.0885.3410.2820.2820.0000.0000.0000.000
169A94LEU0-0.0990.1014.954-0.045-0.0450.0000.0000.0000.000
170A95LYS00.045-0.1256.3270.0160.0160.0000.0000.0000.000
171A95LYS10.8821.08210.4090.0240.0240.0000.0000.0000.000
172A96ARG00.100-0.0679.336-0.053-0.0530.0000.0000.0000.000
173A96ARG10.8281.0428.894-0.393-0.3930.0000.0000.0000.000
174A97ALA00.071-0.0794.779-0.133-0.108-0.002-0.004-0.0190.000
175A97ALA0-0.0810.0944.1260.0450.105-0.001-0.019-0.0400.000
176A98LYS0-0.022-0.1435.8270.0040.0040.0000.0000.0000.000
177A98LYS10.8221.0514.8910.6280.6280.0000.0000.0000.000
178A99GLY00.049-0.0617.781-0.094-0.0940.0000.0000.0000.000
179A100VAL00.099-0.00810.770-0.030-0.0300.0000.0000.0000.000
180A100VAL0-0.1240.09910.348-0.014-0.0140.0000.0000.0000.000
181A101TRP00.034-0.10912.3380.0400.0400.0000.0000.0000.000
182A101TRP00.0070.13116.6160.0040.0040.0000.0000.0000.000
183A102ILE0-0.134-0.16813.0370.0160.0160.0000.0000.0000.000
184A102ILE00.0930.05816.160-0.001-0.0010.0000.0000.0000.000