FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 9QRJ2

Calculation Name: 6HXX-A-Other547

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 6HXX

Chain ID: A

ChEMBL ID:

UniProt ID: A0A0A7

Base Structure: ElectronMicroscopy

Registration Date: 2025-10-06

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 224
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2216496.161562
FMO2-HF: Nuclear repulsion 2125291.107667
FMO2-HF: Total energy -91205.053896
FMO2-MP2: Total energy -91463.182094


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:44:VAL)


Summations of interaction energy for fragment #1(A:44:VAL)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
70.84373.5340.35-1.305-1.737-0.009
Interaction energy analysis for fragmet #1(A:44:VAL)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.890 / q_NPA : 0.933
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A46ARG10.9680.9842.79347.37350.0640.350-1.305-1.737-0.009
4A47ILE00.0330.0195.5010.8230.8230.0000.0000.0000.000
5A48LYS10.9600.9748.01821.10921.1090.0000.0000.0000.000
6A49ALA00.0400.01511.835-0.031-0.0310.0000.0000.0000.000
7A50ILE00.0200.01814.3040.4640.4640.0000.0000.0000.000
8A51THR00.0210.01113.120-0.106-0.1060.0000.0000.0000.000
9A52SER00.0480.01815.5051.0121.0120.0000.0000.0000.000
10A53LYS10.9140.94916.20416.86116.8610.0000.0000.0000.000
11A54MET00.0620.05118.857-0.208-0.2080.0000.0000.0000.000
12A55ARG10.8970.93720.58011.64911.6490.0000.0000.0000.000
13A56MET00.0460.03321.8590.2860.2860.0000.0000.0000.000
14A57PRO00.0240.01525.1160.2390.2390.0000.0000.0000.000
15A58LYS10.9470.96528.78510.11910.1190.0000.0000.0000.000
16A59SER00.0020.00431.2670.3350.3350.0000.0000.0000.000
17A60LYS10.9880.97734.7927.7387.7380.0000.0000.0000.000
18A61GLY00.0100.01733.4090.0220.0220.0000.0000.0000.000
19A62ALA00.0450.03231.387-0.360-0.3600.0000.0000.0000.000
20A63THR0-0.022-0.02825.7270.2080.2080.0000.0000.0000.000
21A64VAL0-0.013-0.00229.1340.1110.1110.0000.0000.0000.000
22A65LEU00.0040.00225.1670.1270.1270.0000.0000.0000.000
23A66ASN00.0380.01825.483-0.575-0.5750.0000.0000.0000.000
24A67LEU0-0.022-0.01918.1900.0120.0120.0000.0000.0000.000
25A68GLU-1-0.879-0.94720.393-15.628-15.6280.0000.0000.0000.000
26A69HIS00.0160.00722.180-0.228-0.2280.0000.0000.0000.000
27A70LEU0-0.057-0.02520.9510.1280.1280.0000.0000.0000.000
28A71LEU0-0.080-0.04216.332-0.643-0.6430.0000.0000.0000.000
29A72GLU-1-0.954-0.95920.158-13.796-13.7960.0000.0000.0000.000
30A73TYR0-0.001-0.00323.0690.7080.7080.0000.0000.0000.000
31A74ALA00.0250.00624.220-0.258-0.2580.0000.0000.0000.000
32A75PRO0-0.0030.00826.0130.2060.2060.0000.0000.0000.000
33A76GLN0-0.044-0.04728.2350.0550.0550.0000.0000.0000.000
34A77GLN0-0.0050.00628.6100.0820.0820.0000.0000.0000.000
35A78ILE00.0200.01830.3980.1520.1520.0000.0000.0000.000
36A79ASP-1-0.847-0.91633.891-8.477-8.4770.0000.0000.0000.000
37A80ILE0-0.040-0.02030.7290.0950.0950.0000.0000.0000.000
38A81SER0-0.029-0.00635.197-0.048-0.0480.0000.0000.0000.000
39A82ASN0-0.009-0.01136.9210.1950.1950.0000.0000.0000.000
40A83THR0-0.057-0.03039.3820.2070.2070.0000.0000.0000.000
41A84ARG10.8930.94238.4668.1198.1190.0000.0000.0000.000
42A85ALA00.0130.02041.477-0.056-0.0560.0000.0000.0000.000
43A86THR00.0240.00041.550-0.097-0.0970.0000.0000.0000.000
44A87GLN00.0590.01840.8170.0450.0450.0000.0000.0000.000
45A88SER00.0710.02742.8620.0530.0530.0000.0000.0000.000
46A89GLN0-0.0190.01545.8790.0800.0800.0000.0000.0000.000
47A90PHE0-0.023-0.01245.2450.1220.1220.0000.0000.0000.000
48A91ASP-1-0.915-0.95046.397-6.488-6.4880.0000.0000.0000.000
49A92THR00.014-0.00748.2680.1310.1310.0000.0000.0000.000
50A93TRP0-0.071-0.04150.1780.0790.0790.0000.0000.0000.000
51A94TYR00.009-0.00349.9420.1020.1020.0000.0000.0000.000
52A95GLU-1-0.895-0.94551.945-5.745-5.7450.0000.0000.0000.000
53A96ALA0-0.010-0.01054.1140.1200.1200.0000.0000.0000.000
54A97VAL0-0.052-0.03354.0990.1190.1190.0000.0000.0000.000
55A98GLN0-0.032-0.02555.010-0.019-0.0190.0000.0000.0000.000
56A99LEU0-0.031-0.01957.5090.1000.1000.0000.0000.0000.000
57A100ALA0-0.033-0.01759.8940.0990.0990.0000.0000.0000.000
58A101TYR0-0.075-0.06458.4000.0350.0350.0000.0000.0000.000
59A102ASP-1-0.917-0.93562.280-4.836-4.8360.0000.0000.0000.000
60A103ILE0-0.0230.00058.4010.0130.0130.0000.0000.0000.000
61A104GLY00.0470.02959.261-0.061-0.0610.0000.0000.0000.000
62A105GLU-1-0.939-0.98151.998-6.066-6.0660.0000.0000.0000.000
63A106THR0-0.053-0.04554.006-0.070-0.0700.0000.0000.0000.000
64A107GLU-1-0.920-0.95755.138-5.245-5.2450.0000.0000.0000.000
65A108MET00.0230.02753.8640.0230.0230.0000.0000.0000.000
66A109PRO00.008-0.00750.346-0.043-0.0430.0000.0000.0000.000
67A110THR00.0000.00252.225-0.103-0.1030.0000.0000.0000.000
68A111VAL00.0440.03254.6220.0080.0080.0000.0000.0000.000
69A112MET0-0.021-0.00750.535-0.039-0.0390.0000.0000.0000.000
70A113ASN0-0.021-0.01249.606-0.146-0.1460.0000.0000.0000.000
71A114GLY00.0280.01151.771-0.019-0.0190.0000.0000.0000.000
72A115LEU00.0180.00953.3110.0050.0050.0000.0000.0000.000
73A116MET0-0.011-0.00347.321-0.070-0.0700.0000.0000.0000.000
74A117VAL0-0.001-0.00250.991-0.038-0.0380.0000.0000.0000.000
75A118TRP00.0470.02352.7610.0100.0100.0000.0000.0000.000
76A119CYS0-0.070-0.04351.5370.0600.0600.0000.0000.0000.000
77A120ILE0-0.046-0.00748.166-0.112-0.1120.0000.0000.0000.000
78A121GLU-1-0.831-0.88851.301-5.713-5.7130.0000.0000.0000.000
79A122ASN0-0.020-0.01054.7110.0770.0770.0000.0000.0000.000
80A123GLY00.0260.01353.390-0.100-0.1000.0000.0000.0000.000
81A124THR0-0.005-0.02650.5460.0310.0310.0000.0000.0000.000
82A125SER0-0.031-0.02952.734-0.099-0.0990.0000.0000.0000.000
83A126PRO00.0330.00654.0150.0400.0400.0000.0000.0000.000
84A127ASN0-0.035-0.01956.4780.0670.0670.0000.0000.0000.000
85A128ILE0-0.0350.00656.7210.0920.0920.0000.0000.0000.000
86A129ASN0-0.003-0.00759.761-0.008-0.0080.0000.0000.0000.000
87A130GLY00.0330.02063.031-0.007-0.0070.0000.0000.0000.000
88A131VAL00.0130.00563.799-0.029-0.0290.0000.0000.0000.000
89A132TRP0-0.051-0.02457.409-0.036-0.0360.0000.0000.0000.000
90A133VAL00.0140.00260.7400.0380.0380.0000.0000.0000.000
91A134MET0-0.038-0.01056.692-0.122-0.1220.0000.0000.0000.000
92A135MET0-0.043-0.01759.9070.0850.0850.0000.0000.0000.000
93A136ASP-1-0.947-0.96860.464-5.132-5.1320.0000.0000.0000.000
94A137GLY00.004-0.00162.5870.0750.0750.0000.0000.0000.000
95A138ASP-1-1.019-1.00563.603-4.741-4.7410.0000.0000.0000.000
96A139GLU-1-0.890-0.93666.244-4.677-4.6770.0000.0000.0000.000
97A140GLN0-0.037-0.04264.646-0.069-0.0690.0000.0000.0000.000
98A141VAL00.0100.01162.7070.0680.0680.0000.0000.0000.000
99A142GLU-1-0.931-0.97563.641-4.699-4.6990.0000.0000.0000.000
100A143TYR00.0560.02960.5460.0500.0500.0000.0000.0000.000
101A144PRO00.0090.00262.706-0.023-0.0230.0000.0000.0000.000
102A145LEU00.0250.00058.438-0.093-0.0930.0000.0000.0000.000
103A146LYS10.9120.97359.8344.6774.6770.0000.0000.0000.000
104A147PRO00.0790.03659.683-0.056-0.0560.0000.0000.0000.000
105A148ILE00.0150.02754.604-0.108-0.1080.0000.0000.0000.000
106A149VAL0-0.029-0.03355.282-0.131-0.1310.0000.0000.0000.000
107A150GLU-1-0.953-0.97256.861-5.135-5.1350.0000.0000.0000.000
108A151ASN00.0110.00355.500-0.028-0.0280.0000.0000.0000.000
109A152ALA0-0.032-0.00152.274-0.142-0.1420.0000.0000.0000.000
110A153LYS10.9380.98050.8425.9585.9580.0000.0000.0000.000
111A154PRO0-0.087-0.04547.2770.0480.0480.0000.0000.0000.000
112A155THR00.033-0.00248.9330.0780.0780.0000.0000.0000.000
113A156LEU00.0790.04949.835-0.122-0.1220.0000.0000.0000.000
114A157ARG10.8020.89347.5136.0236.0230.0000.0000.0000.000
115A158GLN00.0300.00644.857-0.057-0.0570.0000.0000.0000.000
116A159ILE00.0150.02544.980-0.179-0.1790.0000.0000.0000.000
117A160MET00.0640.02446.164-0.157-0.1570.0000.0000.0000.000
118A161ALA0-0.0110.00342.151-0.093-0.0930.0000.0000.0000.000
119A162HIS10.7990.88541.6257.0787.0780.0000.0000.0000.000
120A163PHE00.0550.03042.359-0.095-0.0950.0000.0000.0000.000
121A164SER00.0160.02040.4570.0760.0760.0000.0000.0000.000
122A165ASP-1-0.869-0.93837.843-7.873-7.8730.0000.0000.0000.000
123A166VAL00.001-0.00640.0740.0270.0270.0000.0000.0000.000
124A167ALA00.0370.01342.9400.1110.1110.0000.0000.0000.000
125A168GLU-1-0.875-0.93438.548-7.911-7.9110.0000.0000.0000.000
126A169ALA00.001-0.00940.9470.0500.0500.0000.0000.0000.000
127A170TYR00.0350.02142.6530.0880.0880.0000.0000.0000.000
128A171ILE0-0.011-0.00545.4770.1230.1230.0000.0000.0000.000
129A172GLU-1-0.901-0.94340.428-7.497-7.4970.0000.0000.0000.000
130A173MET0-0.043-0.01344.7270.1050.1050.0000.0000.0000.000
131A174ARG10.8990.93846.7235.9025.9020.0000.0000.0000.000
132A175ASN0-0.049-0.03847.0160.1860.1860.0000.0000.0000.000
133A176LYS10.8000.90242.2497.1347.1340.0000.0000.0000.000
134A177LYS10.9040.96948.3635.6545.6540.0000.0000.0000.000
135A178GLU-1-0.874-0.92752.204-5.499-5.4990.0000.0000.0000.000
136A179PRO0-0.014-0.01052.065-0.117-0.1170.0000.0000.0000.000
137A180TYR0-0.017-0.02650.2260.0510.0510.0000.0000.0000.000
138A181MET0-0.039-0.01550.237-0.142-0.1420.0000.0000.0000.000
139A182PRO00.0320.03649.5680.1120.1120.0000.0000.0000.000
140A183ARG10.9360.93652.8375.3235.3230.0000.0000.0000.000
141A184TYR0-0.0130.00949.0280.0730.0730.0000.0000.0000.000
142A185GLY00.0700.01051.0280.0030.0030.0000.0000.0000.000
143A186LEU0-0.037-0.01151.6310.0210.0210.0000.0000.0000.000
144A187VAL0-0.023-0.01855.1420.0700.0700.0000.0000.0000.000
145A188ARG10.8300.92650.9015.8815.8810.0000.0000.0000.000
146A189ASN0-0.048-0.01352.898-0.072-0.0720.0000.0000.0000.000
147A190LEU00.0170.01046.474-0.041-0.0410.0000.0000.0000.000
148A191ARG10.9630.95250.7925.6205.6200.0000.0000.0000.000
149A192ASP-1-0.785-0.86145.160-6.840-6.8400.0000.0000.0000.000
150A193GLY00.0500.04248.025-0.023-0.0230.0000.0000.0000.000
151A194SER00.011-0.00443.520-0.051-0.0510.0000.0000.0000.000
152A195LEU0-0.082-0.05640.958-0.146-0.1460.0000.0000.0000.000
153A196ALA00.0140.01044.270-0.015-0.0150.0000.0000.0000.000
154A197ARG10.8990.95738.5907.6727.6720.0000.0000.0000.000
155A198TYR0-0.019-0.03137.945-0.090-0.0900.0000.0000.0000.000
156A199ALA0-0.065-0.01543.6340.0300.0300.0000.0000.0000.000
157A200PHE00.0540.01543.3080.1680.1680.0000.0000.0000.000
158A201ASP-1-0.803-0.88047.056-6.130-6.1300.0000.0000.0000.000
159A202PHE0-0.022-0.00945.442-0.028-0.0280.0000.0000.0000.000
160A203TYR0-0.034-0.00237.575-0.173-0.1730.0000.0000.0000.000
161A204GLU-1-0.796-0.91238.041-8.035-8.0350.0000.0000.0000.000
162A205VAL0-0.048-0.03136.029-0.159-0.1590.0000.0000.0000.000
163A206THR00.0180.02432.311-0.197-0.1970.0000.0000.0000.000
164A207SER0-0.045-0.04629.009-0.088-0.0880.0000.0000.0000.000
165A208ARG10.9210.95726.69610.31810.3180.0000.0000.0000.000
166A209THR00.0780.06230.8360.1980.1980.0000.0000.0000.000
167A210PRO00.007-0.00133.133-0.182-0.1820.0000.0000.0000.000
168A211VAL00.032-0.00232.1690.2000.2000.0000.0000.0000.000
169A212ARG10.8750.91134.9667.3597.3590.0000.0000.0000.000
170A213ALA00.0350.02537.7260.2040.2040.0000.0000.0000.000
171A214ARG10.9080.96930.5389.2719.2710.0000.0000.0000.000
172A215GLU-1-0.858-0.91138.660-7.120-7.1200.0000.0000.0000.000
173A216ALA00.0180.00840.8640.1830.1830.0000.0000.0000.000
174A217HIS00.0190.01241.8250.2230.2230.0000.0000.0000.000
175A218ILE0-0.015-0.01139.3060.1350.1350.0000.0000.0000.000
176A219GLN0-0.028-0.02343.7430.2990.2990.0000.0000.0000.000
177A220MET0-0.028-0.00445.7650.2260.2260.0000.0000.0000.000
178A221LYS10.9650.98843.8397.0167.0160.0000.0000.0000.000
179A222ALA00.004-0.00747.5560.1200.1200.0000.0000.0000.000
180A223ALA0-0.006-0.00949.2730.1390.1390.0000.0000.0000.000
181A224ALA0-0.067-0.02851.2110.1440.1440.0000.0000.0000.000
182A225LEU0-0.027-0.02049.0030.0950.0950.0000.0000.0000.000
183A226LYS10.9180.96653.0725.5095.5090.0000.0000.0000.000
184A227SER00.0040.00253.6260.0450.0450.0000.0000.0000.000
185A228ALA00.0050.01354.8990.0930.0930.0000.0000.0000.000
186A229GLN0-0.0050.00555.507-0.085-0.0850.0000.0000.0000.000
187A230SER0-0.007-0.00954.6860.0460.0460.0000.0000.0000.000
188A231ARG10.8890.94056.7484.8224.8220.0000.0000.0000.000
189A232LEU00.0000.00756.854-0.008-0.0080.0000.0000.0000.000
190A233PHE00.0530.02559.6700.0010.0010.0000.0000.0000.000
191A234GLY0-0.0040.00163.4220.0220.0220.0000.0000.0000.000
192A235LEU0-0.011-0.01466.385-0.009-0.0090.0000.0000.0000.000
193A236ASP-1-0.888-0.93768.684-4.506-4.5060.0000.0000.0000.000
194A237GLY00.006-0.01070.0170.0560.0560.0000.0000.0000.000
195A238GLY00.0080.01972.4230.0560.0560.0000.0000.0000.000
196A239ILE0-0.039-0.03174.4270.0350.0350.0000.0000.0000.000
197A240SER0-0.019-0.00277.1240.0620.0620.0000.0000.0000.000
198A241THR0-0.017-0.01377.4410.0050.0050.0000.0000.0000.000
199A242GLN0-0.067-0.03079.8830.0420.0420.0000.0000.0000.000
200A243GLU-1-0.891-0.94781.651-3.898-3.8980.0000.0000.0000.000
201A244GLU-1-0.942-0.96584.712-3.669-3.6690.0000.0000.0000.000
202A245ASN0-0.030-0.02187.3070.0240.0240.0000.0000.0000.000
203A246THR0-0.010-0.00989.2040.0370.0370.0000.0000.0000.000
204A247GLU-1-0.843-0.88592.006-3.262-3.2620.0000.0000.0000.000
205A248ARG10.8590.92995.5443.2163.2160.0000.0000.0000.000
206A249HIS00.0360.00698.6060.0040.0040.0000.0000.0000.000
207A250THR0-0.019-0.031101.177-0.001-0.0010.0000.0000.0000.000
208A251THR0-0.037-0.030104.820-0.003-0.0030.0000.0000.0000.000
209A252GLU-1-0.955-0.971107.938-2.928-2.9280.0000.0000.0000.000
210A253ASP-1-0.830-0.871103.506-3.099-3.0990.0000.0000.0000.000
211A254VAL0-0.005-0.012106.7000.0140.0140.0000.0000.0000.000
212A255SER0-0.053-0.040103.9730.0090.0090.0000.0000.0000.000
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