FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

tag_button

FMODB ID: 9R8N2

Calculation Name: 1WG7-A-Other547

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 1WG7

Chain ID: A

ChEMBL ID:

UniProt ID: Q9BZ29

Base Structure: SolutionNMR

Registration Date: 2025-10-05

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 150
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -1318773.645287
FMO2-HF: Nuclear repulsion 1259319.789978
FMO2-HF: Total energy -59453.85531
FMO2-MP2: Total energy -59624.148621


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:GLY)


Summations of interaction energy for fragment #1(A:1:GLY)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-41.833-40.466-0.017-0.682-0.668-0.004
Interaction energy analysis for fragmet #1(A:1:GLY)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.861 / q_NPA : 0.918
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3SER00.0280.0013.8467.7889.155-0.017-0.682-0.668-0.004
4A4GLY00.0450.0295.999-1.480-1.4800.0000.0000.0000.000
5A5SER0-0.041-0.0127.590-2.316-2.3160.0000.0000.0000.000
6A6SER0-0.023-0.0169.2451.5781.5780.0000.0000.0000.000
7A7GLY00.0010.01210.9531.5431.5430.0000.0000.0000.000
8A8ALA00.003-0.00313.010-0.389-0.3890.0000.0000.0000.000
9A9ALA0-0.002-0.01016.3710.1580.1580.0000.0000.0000.000
10A10SER0-0.026-0.02419.854-0.176-0.1760.0000.0000.0000.000
11A11LEU00.0630.07219.6860.1700.1700.0000.0000.0000.000
12A12GLY00.032-0.00323.7470.0040.0040.0000.0000.0000.000
13A13SER00.0090.00227.2740.3310.3310.0000.0000.0000.000
14A14GLN0-0.035-0.03131.0650.0210.0210.0000.0000.0000.000
15A15LYS10.8770.93734.4007.7677.7670.0000.0000.0000.000
16A16GLY00.0260.02236.691-0.122-0.1220.0000.0000.0000.000
17A17GLY00.0650.02837.886-0.147-0.1470.0000.0000.0000.000
18A18ILE0-0.059-0.01339.3590.2760.2760.0000.0000.0000.000
19A19THR00.0280.01439.799-0.188-0.1880.0000.0000.0000.000
20A20LYS10.8990.94341.6066.8546.8540.0000.0000.0000.000
21A21HIS00.0300.02642.133-0.295-0.2950.0000.0000.0000.000
22A22GLY00.0440.01744.2820.1860.1860.0000.0000.0000.000
23A23TRP0-0.066-0.03945.690-0.216-0.2160.0000.0000.0000.000
24A24LEU00.0250.02844.7010.1730.1730.0000.0000.0000.000
25A25TYR0-0.043-0.03847.219-0.051-0.0510.0000.0000.0000.000
26A26LYS10.9210.97639.8257.9157.9150.0000.0000.0000.000
27A27GLY0-0.011-0.01345.6840.1220.1220.0000.0000.0000.000
28A28ASN0-0.094-0.06243.825-0.275-0.2750.0000.0000.0000.000
29A29MET00.0310.03944.220-0.091-0.0910.0000.0000.0000.000
30A30ASN0-0.071-0.04245.245-0.041-0.0410.0000.0000.0000.000
31A31SER00.0450.03247.9400.0610.0610.0000.0000.0000.000
32A32ALA00.0420.02950.9890.1120.1120.0000.0000.0000.000
33A33ILE00.0660.01652.692-0.110-0.1100.0000.0000.0000.000
34A34SER00.0480.00253.518-0.080-0.0800.0000.0000.0000.000
35A35VAL0-0.017-0.00448.798-0.072-0.0720.0000.0000.0000.000
36A36THR00.0250.01649.017-0.197-0.1970.0000.0000.0000.000
37A37MET0-0.030-0.01748.804-0.110-0.1100.0000.0000.0000.000
38A38ARG10.9300.95946.9076.7786.7780.0000.0000.0000.000
39A39SER0-0.022-0.00749.324-0.045-0.0450.0000.0000.0000.000
40A40PHE00.0200.01549.551-0.085-0.0850.0000.0000.0000.000
41A41LYS10.9760.99846.8086.6346.6340.0000.0000.0000.000
42A42ARG10.7980.90447.3586.0726.0720.0000.0000.0000.000
43A43ARG10.8850.93342.0367.2417.2410.0000.0000.0000.000
44A44PHE00.0520.04741.7090.1150.1150.0000.0000.0000.000
45A45PHE0-0.020-0.02641.251-0.237-0.2370.0000.0000.0000.000
46A46HIS00.0290.00136.8820.0350.0350.0000.0000.0000.000
47A47LEU0-0.053-0.02037.387-0.163-0.1630.0000.0000.0000.000
48A48ILE0-0.027-0.01232.1430.1590.1590.0000.0000.0000.000
49A49GLN00.0210.02131.8370.1450.1450.0000.0000.0000.000
50A50LEU0-0.064-0.04327.683-0.029-0.0290.0000.0000.0000.000
51A51GLY00.0620.03326.2340.2410.2410.0000.0000.0000.000
52A52ASP-1-0.890-0.96125.298-12.588-12.5880.0000.0000.0000.000
53A53GLY00.0870.06127.1920.2220.2220.0000.0000.0000.000
54A54SER00.0360.02928.4220.4370.4370.0000.0000.0000.000
55A55TYR0-0.044-0.06131.3520.1090.1090.0000.0000.0000.000
56A56ASN00.0540.01829.9970.0340.0340.0000.0000.0000.000
57A57LEU0-0.051-0.00933.8950.2230.2230.0000.0000.0000.000
58A58ASN00.0560.02132.312-0.120-0.1200.0000.0000.0000.000
59A59PHE00.0060.01136.3130.3020.3020.0000.0000.0000.000
60A60TYR00.0570.02834.197-0.100-0.1000.0000.0000.0000.000
61A61LYS10.8280.90939.7237.9897.9890.0000.0000.0000.000
62A62ASP-1-0.839-0.94342.348-7.128-7.1280.0000.0000.0000.000
63A63GLU-1-0.826-0.90842.370-6.831-6.8310.0000.0000.0000.000
64A64LYS10.8670.94741.4617.1077.1070.0000.0000.0000.000
65A65ILE00.0500.01337.435-0.109-0.1090.0000.0000.0000.000
66A66SER0-0.0240.00334.446-0.072-0.0720.0000.0000.0000.000
67A67LYS10.9550.97532.8248.2398.2390.0000.0000.0000.000
68A68GLU-1-0.840-0.92229.467-10.679-10.6790.0000.0000.0000.000
69A69PRO0-0.076-0.02832.1600.3540.3540.0000.0000.0000.000
70A70LYS10.8110.89034.7148.3268.3260.0000.0000.0000.000
71A71GLY00.0360.01233.939-0.036-0.0360.0000.0000.0000.000
72A72SER0-0.0140.00231.3590.0630.0630.0000.0000.0000.000
73A73ILE0-0.035-0.01833.679-0.027-0.0270.0000.0000.0000.000
74A74PHE00.0800.03229.6870.0880.0880.0000.0000.0000.000
75A75LEU0-0.017-0.02232.7150.1590.1590.0000.0000.0000.000
76A76ASP-1-0.850-0.92429.625-10.152-10.1520.0000.0000.0000.000
77A77SER00.0080.01731.1300.0090.0090.0000.0000.0000.000
78A78CYS0-0.107-0.05233.5410.2650.2650.0000.0000.0000.000
79A79MET00.0020.00537.2400.0730.0730.0000.0000.0000.000
80A80GLY00.0320.00839.7150.1340.1340.0000.0000.0000.000
81A81VAL0-0.060-0.01943.031-0.040-0.0400.0000.0000.0000.000
82A82VAL0-0.0130.00245.4230.1510.1510.0000.0000.0000.000
83A83GLN00.0480.00848.4950.0530.0530.0000.0000.0000.000
84A84ASN0-0.047-0.03049.282-0.006-0.0060.0000.0000.0000.000
85A85ASN0-0.0180.00752.6900.1820.1820.0000.0000.0000.000
86A86LYS10.9440.94855.5745.5795.5790.0000.0000.0000.000
87A87VAL0-0.0220.00751.9280.0690.0690.0000.0000.0000.000
88A88ARG10.9870.97554.7525.7185.7180.0000.0000.0000.000
89A89ARG10.9860.99455.7215.1835.1830.0000.0000.0000.000
90A90PHE00.0500.03654.5740.0130.0130.0000.0000.0000.000
91A91ALA0-0.008-0.00951.457-0.118-0.1180.0000.0000.0000.000
92A92PHE00.021-0.00245.7100.1110.1110.0000.0000.0000.000
93A93GLU-1-0.781-0.86644.935-7.048-7.0480.0000.0000.0000.000
94A94LEU0-0.0200.00041.0100.0360.0360.0000.0000.0000.000
95A95LYS10.8730.92141.4916.9426.9420.0000.0000.0000.000
96A96MET00.0230.02534.297-0.109-0.1090.0000.0000.0000.000
97A97GLN00.0600.01831.2130.3630.3630.0000.0000.0000.000
98A98ASP-1-0.955-0.96131.445-10.205-10.2050.0000.0000.0000.000
99A99LYS10.8830.92833.9978.4418.4410.0000.0000.0000.000
100A100SER00.0230.01236.9650.1540.1540.0000.0000.0000.000
101A101SER0-0.027-0.04238.7980.0280.0280.0000.0000.0000.000
102A102TYR0-0.0110.00635.5940.0900.0900.0000.0000.0000.000
103A103LEU0-0.017-0.00942.4080.1170.1170.0000.0000.0000.000
104A104LEU00.0180.01642.777-0.073-0.0730.0000.0000.0000.000
105A105ALA0-0.001-0.00346.8390.1470.1470.0000.0000.0000.000
106A106ALA00.0260.02449.887-0.102-0.1020.0000.0000.0000.000
107A107ASP-1-0.792-0.89151.964-5.788-5.7880.0000.0000.0000.000
108A108SER0-0.051-0.03954.8330.1730.1730.0000.0000.0000.000
109A109GLU-1-0.942-0.96854.858-5.486-5.4860.0000.0000.0000.000
110A110VAL00.1130.06254.069-0.103-0.1030.0000.0000.0000.000
111A111GLU-1-0.904-0.96151.044-6.258-6.2580.0000.0000.0000.000
112A112MET0-0.066-0.02050.027-0.143-0.1430.0000.0000.0000.000
113A113GLU-1-0.924-0.96850.113-5.978-5.9780.0000.0000.0000.000
114A114GLU-1-0.864-0.91549.118-6.441-6.4410.0000.0000.0000.000
115A115TRP00.007-0.01041.971-0.191-0.1910.0000.0000.0000.000
116A116ILE0-0.026-0.01145.473-0.152-0.1520.0000.0000.0000.000
117A117THR0-0.013-0.01046.360-0.103-0.1030.0000.0000.0000.000
118A118ILE0-0.045-0.02842.254-0.105-0.1050.0000.0000.0000.000
119A119LEU00.0040.00840.243-0.174-0.1740.0000.0000.0000.000
120A120ASN00.0520.00941.518-0.250-0.2500.0000.0000.0000.000
121A121LYS10.9310.98142.7136.8226.8220.0000.0000.0000.000
122A122ILE00.0240.01736.671-0.071-0.0710.0000.0000.0000.000
123A123LEU0-0.049-0.02338.022-0.139-0.1390.0000.0000.0000.000
124A124GLN0-0.020-0.01238.796-0.049-0.0490.0000.0000.0000.000
125A125LEU00.000-0.01638.649-0.053-0.0530.0000.0000.0000.000
126A126ASN00.0380.03434.526-0.262-0.2620.0000.0000.0000.000
127A127PHE0-0.034-0.00234.694-0.221-0.2210.0000.0000.0000.000
128A128GLU-1-0.980-0.99836.319-7.661-7.6610.0000.0000.0000.000
129A129ALA00.0300.01733.417-0.063-0.0630.0000.0000.0000.000
130A130ALA00.0530.03431.405-0.247-0.2470.0000.0000.0000.000
131A131MET0-0.105-0.06631.801-0.251-0.2510.0000.0000.0000.000
132A132GLN0-0.053-0.03233.865-0.113-0.1130.0000.0000.0000.000
133A133GLU-1-0.845-0.92428.312-10.680-10.6800.0000.0000.0000.000
134A134LYS10.9000.96828.6269.7799.7790.0000.0000.0000.000
135A135ARG10.8080.89029.6458.9748.9740.0000.0000.0000.000
136A136ASN0-0.023-0.00729.8530.5350.5350.0000.0000.0000.000
137A137GLY00.0160.02126.547-0.205-0.2050.0000.0000.0000.000
138A138ASP-1-0.957-0.97926.399-10.886-10.8860.0000.0000.0000.000
139A139SER0-0.053-0.02425.7870.4220.4220.0000.0000.0000.000
140A140HIS0-0.030-0.01724.052-0.447-0.4470.0000.0000.0000.000
141A141GLU-1-0.861-0.93225.192-10.789-10.7890.0000.0000.0000.000
142A142ASP-1-1.019-1.00124.378-11.293-11.2930.0000.0000.0000.000
143A143ASP-1-0.941-0.95121.302-13.762-13.7620.0000.0000.0000.000
144A144GLU-1-0.929-0.97120.806-14.942-14.9420.0000.0000.0000.000
145A145SER0-0.070-0.05223.7360.7440.7440.0000.0000.0000.000
146A146GLY0-0.060-0.01624.381-0.262-0.2620.0000.0000.0000.000
147A147PRO00.0410.03720.697-0.163-0.1630.0000.0000.0000.000
148A148SER0-0.011-0.03020.342-0.627-0.6270.0000.0000.0000.000
149A149SER0-0.091-0.05422.4590.4300.4300.0000.0000.0000.000
150A150GLY-1-0.934-0.93923.982-12.885-12.8850.0000.0000.0000.000