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FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: 9YJ92

Calculation Name: 1HWG-A-Xray307

Preferred Name: Growth hormone receptor

Target Type: SINGLE PROTEIN

Ligand Name:

ligand 3-letter code:

PDB ID: 1HWG

Chain ID: A

ChEMBL ID: CHEMBL1976

UniProt ID: P10912

Base Structure: X-ray

Registration Date: 2021-09-06

Reference: C. Watanabe, S. Koyama, K. Kamisaka, D. Takaya, T. Honma et. al., Interaction energy analysis of Apo structure dataset on FMODB, To be pubulished.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 1.20200116
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 191
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -2176617.146731
FMO2-HF: Nuclear repulsion 2099188.402862
FMO2-HF: Total energy -77428.743869
FMO2-MP2: Total energy -77654.093253


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:PHE )


Summations of interaction energy for fragment #1(A:1:PHE )
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-4.342-0.3630.73-2.056-2.653-0.006
Interaction energy analysis for fragmet #1(A:1:PHE )
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.027 / q_NPA : 0.015
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3THR 00.0510.0162.615-4.995-1.1210.731-2.049-2.556-0.006
4A4ILE 0-0.025-0.0064.8710.4880.593-0.001-0.007-0.0970.000
5A5PRO 00.0050.0077.7880.0270.0270.0000.0000.0000.000
6A6LEU 00.0730.01310.8620.0240.0240.0000.0000.0000.000
7A7SER 00.0830.04012.8880.0220.0220.0000.0000.0000.000
8A8ARG 10.9610.9749.3971.0111.0110.0000.0000.0000.000
9A9LEU 0-0.048-0.0059.8060.0110.0110.0000.0000.0000.000
10A10PHE 00.0710.01213.6240.0570.0570.0000.0000.0000.000
11A11ASP -1-0.889-0.93517.147-0.364-0.3640.0000.0000.0000.000
12A12ASN 0-0.027-0.01513.8910.0900.0900.0000.0000.0000.000
13A13ALA 0-0.0030.00317.2240.0450.0450.0000.0000.0000.000
14A14MET 0-0.004-0.00618.7860.0370.0370.0000.0000.0000.000
15A15LEU 00.0000.00320.2270.0340.0340.0000.0000.0000.000
16A16ARG 10.7860.88918.7840.3100.3100.0000.0000.0000.000
17A17ALA 00.018-0.00122.6360.0230.0230.0000.0000.0000.000
18A18HIS 0-0.0010.02124.5880.0260.0260.0000.0000.0000.000
19A19ARG 10.8140.91425.7530.1590.1590.0000.0000.0000.000
20A20LEU 0-0.007-0.01524.8550.0160.0160.0000.0000.0000.000
21A21HIS 0-0.021-0.00428.2560.0240.0240.0000.0000.0000.000
22A22GLN 0-0.012-0.00330.4540.0040.0040.0000.0000.0000.000
23A23LEU 0-0.021-0.01929.6360.0110.0110.0000.0000.0000.000
24A24ALA 0-0.0010.01832.5720.0100.0100.0000.0000.0000.000
25A25PHE 0-0.028-0.01534.2980.0090.0090.0000.0000.0000.000
26A26ASP -1-0.822-0.91836.127-0.103-0.1030.0000.0000.0000.000
27A27THR 0-0.050-0.03536.2350.0070.0070.0000.0000.0000.000
28A28TYR 0-0.053-0.02538.3310.0050.0050.0000.0000.0000.000
29A29GLN 0-0.018-0.02740.1270.0040.0040.0000.0000.0000.000
30A30GLU -1-0.766-0.87641.522-0.070-0.0700.0000.0000.0000.000
31A31PHE 0-0.0090.00142.7190.0050.0050.0000.0000.0000.000
32A32GLU -1-0.867-0.95744.319-0.075-0.0750.0000.0000.0000.000
33A33GLU -1-0.989-0.99346.196-0.067-0.0670.0000.0000.0000.000
34A34ALA 0-0.029-0.00147.8120.0030.0030.0000.0000.0000.000
35A35TYR 0-0.085-0.03646.5360.0030.0030.0000.0000.0000.000
36A36ILE 0-0.064-0.02947.4510.0010.0010.0000.0000.0000.000
37A37PRO 00.0290.03250.160-0.002-0.0020.0000.0000.0000.000
38A38LYS 10.9340.93849.0340.0650.0650.0000.0000.0000.000
39A39GLU -1-0.901-0.93752.875-0.050-0.0500.0000.0000.0000.000
40A40GLN 00.0810.03551.7650.0000.0000.0000.0000.0000.000
41A41LYS 10.9461.00345.5760.0780.0780.0000.0000.0000.000
42A42TYR 0-0.064-0.04549.421-0.003-0.0030.0000.0000.0000.000
43A43SER 00.004-0.01651.6700.0000.0000.0000.0000.0000.000
44A44PHE 00.0140.01443.2990.0010.0010.0000.0000.0000.000
45A45LEU 00.021-0.00944.781-0.002-0.0020.0000.0000.0000.000
46A46GLN 0-0.073-0.02348.016-0.001-0.0010.0000.0000.0000.000
47A47ASN 0-0.062-0.02950.2430.0040.0040.0000.0000.0000.000
48A48PRO 0-0.002-0.00649.222-0.003-0.0030.0000.0000.0000.000
49A49GLN 00.0140.02243.3390.0040.0040.0000.0000.0000.000
50A50THR 0-0.028-0.03945.704-0.002-0.0020.0000.0000.0000.000
51A51SER 0-0.0680.00044.045-0.003-0.0030.0000.0000.0000.000
52A52LEU 0-0.090-0.02541.473-0.002-0.0020.0000.0000.0000.000
53A53CYS -1-0.684-0.84137.218-0.104-0.1040.0000.0000.0000.000
54A54PHE 0-0.049-0.04332.740-0.002-0.0020.0000.0000.0000.000
55A55SER 0-0.064-0.06332.6950.0000.0000.0000.0000.0000.000
56A56GLU -1-0.885-0.95033.843-0.112-0.1120.0000.0000.0000.000
57A57SER 0-0.070-0.02934.6420.0030.0030.0000.0000.0000.000
58A58ILE 0-0.076-0.02829.563-0.004-0.0040.0000.0000.0000.000
59A59PRO 0-0.0210.00531.8060.0020.0020.0000.0000.0000.000
60A60THR 0-0.017-0.01530.764-0.011-0.0110.0000.0000.0000.000
61A61PRO 0-0.012-0.00830.9270.0080.0080.0000.0000.0000.000
62A62SER 00.0230.02033.9270.0010.0010.0000.0000.0000.000
63A63ASN 00.0390.02536.303-0.001-0.0010.0000.0000.0000.000
64A64ARG 11.0001.00734.2900.1500.1500.0000.0000.0000.000
65A65GLU -1-0.959-0.98134.411-0.130-0.1300.0000.0000.0000.000
66A66GLU -1-0.828-0.93535.061-0.137-0.1370.0000.0000.0000.000
67A67THR 0-0.018-0.02529.893-0.008-0.0080.0000.0000.0000.000
68A68GLN 0-0.068-0.05030.295-0.008-0.0080.0000.0000.0000.000
69A69GLN 0-0.0190.00030.984-0.007-0.0070.0000.0000.0000.000
70A70LYS 10.9250.99228.0160.1700.1700.0000.0000.0000.000
71A71SER 00.0600.04024.726-0.011-0.0110.0000.0000.0000.000
72A72ASN 00.1010.03320.7090.0280.0280.0000.0000.0000.000
73A73LEU 00.0040.00918.302-0.002-0.0020.0000.0000.0000.000
74A74GLU -1-0.945-0.96821.488-0.201-0.2010.0000.0000.0000.000
75A75LEU 00.0440.02824.1960.0070.0070.0000.0000.0000.000
76A76LEU 00.0190.03617.7720.0040.0040.0000.0000.0000.000
77A77ARG 10.8800.92521.5770.2380.2380.0000.0000.0000.000
78A78ILE 00.004-0.01222.8340.0120.0120.0000.0000.0000.000
79A79SER 00.011-0.01522.7740.0170.0170.0000.0000.0000.000
80A80LEU 0-0.033-0.00519.2350.0070.0070.0000.0000.0000.000
81A81LEU 0-0.044-0.02122.6300.0150.0150.0000.0000.0000.000
82A82LEU 00.0280.02525.9580.0150.0150.0000.0000.0000.000
83A83ILE 00.0160.02322.5610.0120.0120.0000.0000.0000.000
84A84GLN 0-0.039-0.04621.4570.0240.0240.0000.0000.0000.000
85A85SER 0-0.041-0.03025.6660.0160.0160.0000.0000.0000.000
86A86TRP 0-0.004-0.02628.3880.0150.0150.0000.0000.0000.000
87A87LEU 0-0.062-0.01423.6490.0070.0070.0000.0000.0000.000
88A88GLU -1-0.940-0.97428.010-0.086-0.0860.0000.0000.0000.000
89A89PRO 0-0.0160.00331.3740.0070.0070.0000.0000.0000.000
90A90VAL 00.0610.04530.1340.0070.0070.0000.0000.0000.000
91A91GLN 0-0.069-0.02532.8850.0040.0040.0000.0000.0000.000
92A92PHE 0-0.039-0.03734.9070.0070.0070.0000.0000.0000.000
93A93LEU 00.0200.01834.9660.0040.0040.0000.0000.0000.000
94A94ARG 10.8700.94235.2240.0690.0690.0000.0000.0000.000
95A95SER 0-0.032-0.03337.9650.0020.0020.0000.0000.0000.000
96A96VAL 0-0.0070.00839.7660.0030.0030.0000.0000.0000.000
97A97PHE 0-0.003-0.02833.7800.0000.0000.0000.0000.0000.000
98A98ALA 0-0.035-0.00738.4270.0010.0010.0000.0000.0000.000
99A99ASN 0-0.057-0.03440.2820.0040.0040.0000.0000.0000.000
100A100SER 0-0.0290.00739.002-0.001-0.0010.0000.0000.0000.000
101A101LEU 0-0.069-0.02840.1960.0020.0020.0000.0000.0000.000
102A102VAL 00.0130.01035.135-0.002-0.0020.0000.0000.0000.000
103A103TYR 00.0270.00530.099-0.003-0.0030.0000.0000.0000.000
104A104GLY 0-0.016-0.01131.218-0.009-0.0090.0000.0000.0000.000
105A105ALA 00.0420.03031.422-0.008-0.0080.0000.0000.0000.000
106A106SER 00.0270.01532.0120.0050.0050.0000.0000.0000.000
107A107ASP -1-0.769-0.88431.870-0.084-0.0840.0000.0000.0000.000
108A108SER 0-0.019-0.01229.733-0.008-0.0080.0000.0000.0000.000
109A109ASN 0-0.003-0.00227.249-0.011-0.0110.0000.0000.0000.000
110A110VAL 00.0130.00426.911-0.015-0.0150.0000.0000.0000.000
111A111TYR 0-0.022-0.00424.972-0.016-0.0160.0000.0000.0000.000
112A112ASP -1-0.871-0.94623.439-0.138-0.1380.0000.0000.0000.000
113A113LEU 0-0.058-0.03322.244-0.026-0.0260.0000.0000.0000.000
114A114LEU 0-0.0180.00322.461-0.026-0.0260.0000.0000.0000.000
115A115LYS 10.8510.92220.3650.1780.1780.0000.0000.0000.000
116A116ASP -1-0.808-0.89017.016-0.370-0.3700.0000.0000.0000.000
117A117LEU 0-0.037-0.00917.455-0.052-0.0520.0000.0000.0000.000
118A118GLU -1-0.827-0.91918.483-0.271-0.2710.0000.0000.0000.000
119A119GLU -1-0.921-0.95312.413-0.479-0.4790.0000.0000.0000.000
120A120GLY 00.0280.02014.025-0.089-0.0890.0000.0000.0000.000
121A121ILE 0-0.006-0.01414.653-0.065-0.0650.0000.0000.0000.000
122A122GLN 0-0.032-0.01614.765-0.019-0.0190.0000.0000.0000.000
123A123THR 0-0.055-0.0339.300-0.093-0.0930.0000.0000.0000.000
124A124LEU 0-0.029-0.02311.559-0.098-0.0980.0000.0000.0000.000
125A125MET 0-0.054-0.01913.842-0.003-0.0030.0000.0000.0000.000
126A126GLY 0-0.0270.00011.5760.0330.0330.0000.0000.0000.000
127A127ARG 10.8080.9067.9131.3631.3630.0000.0000.0000.000
128A128LEU 00.0120.00411.9110.0230.0230.0000.0000.0000.000
129A129GLU -1-0.980-0.98715.243-0.327-0.3270.0000.0000.0000.000
130A130ASP -1-0.842-0.92916.936-0.455-0.4550.0000.0000.0000.000
131A131GLY 00.0120.01619.9220.0340.0340.0000.0000.0000.000
132A132SER 0-0.040-0.03922.8040.0200.0200.0000.0000.0000.000
133A133PRO 00.0320.03523.046-0.014-0.0140.0000.0000.0000.000
134A134ARG 10.9560.99316.2070.4060.4060.0000.0000.0000.000
135A135THR 0-0.080-0.05924.0070.0130.0130.0000.0000.0000.000
136A136GLY 00.0880.02827.7170.0000.0000.0000.0000.0000.000
137A137GLN 0-0.029-0.01829.336-0.003-0.0030.0000.0000.0000.000
138A138ILE 00.0860.05926.2490.0010.0010.0000.0000.0000.000
139A139PHE 00.0130.00121.671-0.010-0.0100.0000.0000.0000.000
140A140LYS 10.8490.94026.0480.1470.1470.0000.0000.0000.000
141A141GLN 00.021-0.00128.0510.0120.0120.0000.0000.0000.000
142A142THR 0-0.057-0.02127.004-0.009-0.0090.0000.0000.0000.000
143A143TYR 00.0910.04226.5020.0020.0020.0000.0000.0000.000
144A144SER 0-0.005-0.00729.2140.0100.0100.0000.0000.0000.000
145A145LYS 10.8400.92830.3730.1220.1220.0000.0000.0000.000
146A146PHE 00.0690.04934.7690.0010.0010.0000.0000.0000.000
147A147ASP -1-0.833-0.91637.324-0.076-0.0760.0000.0000.0000.000
148A148THR 0-0.033-0.02939.5500.0040.0040.0000.0000.0000.000
149A149ASN 00.0650.01240.6350.0010.0010.0000.0000.0000.000
150A150SER 0-0.021-0.00542.079-0.001-0.0010.0000.0000.0000.000
151A151HIS 0-0.090-0.03844.5950.0040.0040.0000.0000.0000.000
152A152ASN 00.014-0.02643.381-0.004-0.0040.0000.0000.0000.000
153A153ASP -1-0.923-0.94347.079-0.050-0.0500.0000.0000.0000.000
154A154ASP -1-0.848-0.93449.755-0.055-0.0550.0000.0000.0000.000
155A155ALA 00.0030.00347.086-0.002-0.0020.0000.0000.0000.000
156A156LEU 0-0.0110.00846.492-0.003-0.0030.0000.0000.0000.000
157A157LEU 00.0490.00946.402-0.004-0.0040.0000.0000.0000.000
158A158LYS 10.8690.97541.8870.0660.0660.0000.0000.0000.000
159A159ASN 0-0.047-0.03442.086-0.005-0.0050.0000.0000.0000.000
160A160TYR 0-0.039-0.02341.589-0.005-0.0050.0000.0000.0000.000
161A161GLY 00.002-0.00942.313-0.004-0.0040.0000.0000.0000.000
162A162LEU 00.0470.01737.666-0.004-0.0040.0000.0000.0000.000
163A163LEU 0-0.015-0.01937.404-0.007-0.0070.0000.0000.0000.000
164A164TYR 0-0.040-0.03037.907-0.007-0.0070.0000.0000.0000.000
165A165CYS -1-0.807-0.89836.677-0.107-0.1070.0000.0000.0000.000
166A166PHE 0-0.100-0.04030.166-0.009-0.0090.0000.0000.0000.000
167A167ARG 10.9560.97333.0270.0970.0970.0000.0000.0000.000
168A168LYS 10.9290.96933.9710.1020.1020.0000.0000.0000.000
169A169ASP -1-0.801-0.87830.852-0.147-0.1470.0000.0000.0000.000
170A170MET 0-0.056-0.03427.825-0.020-0.0200.0000.0000.0000.000
171A171ASP -1-0.872-0.92329.146-0.166-0.1660.0000.0000.0000.000
172A172LYS 10.9130.97330.4250.1330.1330.0000.0000.0000.000
173A173VAL 0-0.0090.00624.357-0.015-0.0150.0000.0000.0000.000
174A174GLU -1-0.828-0.92425.772-0.220-0.2200.0000.0000.0000.000
175A175THR 0-0.033-0.02926.485-0.013-0.0130.0000.0000.0000.000
176A176PHE 0-0.040-0.04525.958-0.004-0.0040.0000.0000.0000.000
177A177LEU 0-0.018-0.02020.325-0.021-0.0210.0000.0000.0000.000
178A178ARG 10.9530.99422.8940.2400.2400.0000.0000.0000.000
179A179ILE 00.0020.00724.742-0.007-0.0070.0000.0000.0000.000
180A180VAL 0-0.043-0.02820.108-0.005-0.0050.0000.0000.0000.000
181A181GLN 00.0210.00020.589-0.002-0.0020.0000.0000.0000.000
182A182CYS -1-0.765-0.87121.660-0.286-0.2860.0000.0000.0000.000
183A183ARG 10.6840.84023.2640.2630.2630.0000.0000.0000.000
184A184SER 0-0.055-0.02718.204-0.016-0.0160.0000.0000.0000.000
185A185VAL 0-0.113-0.05917.516-0.046-0.0460.0000.0000.0000.000
186A186GLU -1-0.864-0.93219.946-0.268-0.2680.0000.0000.0000.000
187A187GLY 0-0.041-0.02222.440-0.015-0.0150.0000.0000.0000.000
188A188SER 0-0.133-0.07021.8810.0110.0110.0000.0000.0000.000
189A189CYS -1-0.858-0.93423.939-0.257-0.2570.0000.0000.0000.000
190A190GLY 0-0.053-0.03927.4110.0220.0220.0000.0000.0000.000
191A0NME 0-0.031-0.00328.140-0.013-0.0130.0000.0000.0000.000