FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: G4Y51

Calculation Name: 4OWF-A-Xray549

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 4OWF

Chain ID: A

ChEMBL ID:

UniProt ID: O88522

Base Structure: X-ray

Registration Date: 2025-10-12

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement ac.sh, 23 2024 Oct
Water No
Procedure Manual calculation
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 83
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -397990.578687
FMO2-HF: Nuclear repulsion 363622.415056
FMO2-HF: Total energy -34368.163631
FMO2-MP2: Total energy -34469.765997


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:252:GLN)


Summations of interaction energy for fragment #1(A:252:GLN)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-142.673-137.69917.677-12.87-9.781-0.143
Interaction energy analysis for fragmet #1(A:252:GLN)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.799 / q_NPA : 0.881
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A254GLU-1-0.874-0.9263.492-29.456-27.193-0.003-0.924-1.336-0.001
4A255ASP-1-0.738-0.8611.782-133.042-131.21417.627-11.670-7.785-0.141
5A256LEU00.0030.0033.0859.66710.5500.053-0.276-0.660-0.001
6A257ARG10.8640.9276.03342.18442.1840.0000.0000.0000.000
7A258GLN00.0200.0167.0461.6131.6130.0000.0000.0000.000
8A259GLN0-0.016-0.0246.624-0.605-0.6050.0000.0000.0000.000
9A260LEU0-0.017-0.0039.7782.6062.6060.0000.0000.0000.000
10A261GLN0-0.019-0.01312.0271.3721.3720.0000.0000.0000.000
11A262GLN0-0.039-0.03112.6111.9481.9480.0000.0000.0000.000
12A263ALA0-0.040-0.01913.9661.4261.4260.0000.0000.0000.000
13A264GLU-1-0.946-0.96815.686-15.939-15.9390.0000.0000.0000.000
14A265GLU-1-0.810-0.89817.251-17.613-17.6130.0000.0000.0000.000
15A266ALA0-0.031-0.01218.2680.9960.9960.0000.0000.0000.000
16A267LEU0-0.046-0.03119.1900.9680.9680.0000.0000.0000.000
17A268VAL00.0180.01721.7670.7710.7710.0000.0000.0000.000
18A269ALA00.0400.02022.9660.6290.6290.0000.0000.0000.000
19A270LYS10.8610.92922.94413.82713.8270.0000.0000.0000.000
20A271GLN0-0.035-0.01325.7510.2840.2840.0000.0000.0000.000
21A272GLU-1-0.860-0.93727.767-11.245-11.2450.0000.0000.0000.000
22A273LEU0-0.062-0.02528.5660.4380.4380.0000.0000.0000.000
23A274ILE0-0.034-0.02928.4510.4540.4540.0000.0000.0000.000
24A275ASP-1-0.858-0.93431.790-9.729-9.7290.0000.0000.0000.000
25A276LYS10.8660.93433.3619.6499.6490.0000.0000.0000.000
26A277LEU0-0.022-0.01432.7390.2950.2950.0000.0000.0000.000
27A278LYS10.8840.95634.3309.5249.5240.0000.0000.0000.000
28A279GLU-1-0.863-0.92638.173-8.019-8.0190.0000.0000.0000.000
29A280GLU-1-0.878-0.94437.477-8.550-8.5500.0000.0000.0000.000
30A281ALA00.001-0.01140.1660.2420.2420.0000.0000.0000.000
31A282GLU-1-0.963-0.96741.942-7.440-7.4400.0000.0000.0000.000
32A283GLN0-0.014-0.00342.9570.2050.2050.0000.0000.0000.000
33A284HIS00.0260.00142.1890.3200.3200.0000.0000.0000.000
34A285LYS10.8670.93142.9737.5557.5550.0000.0000.0000.000
35A286ILE00.0420.02748.1970.1560.1560.0000.0000.0000.000
36A287VAL00.0090.01149.5480.1590.1590.0000.0000.0000.000
37A288MET0-0.034-0.01247.8670.0950.0950.0000.0000.0000.000
38A289GLU-1-0.929-0.96651.645-6.185-6.1850.0000.0000.0000.000
39A290THR0-0.054-0.03554.1530.1690.1690.0000.0000.0000.000
40A291VAL00.0010.00653.7830.1380.1380.0000.0000.0000.000
41A292PRO0-0.017-0.01656.1240.1150.1150.0000.0000.0000.000
42A293VAL00.0180.01459.3550.1170.1170.0000.0000.0000.000
43A294LEU00.0100.00457.5020.1100.1100.0000.0000.0000.000
44A295LYS10.8300.90960.2665.2725.2720.0000.0000.0000.000
45A296ALA00.0300.01562.1610.0880.0880.0000.0000.0000.000
46A297GLN0-0.008-0.00164.6790.0650.0650.0000.0000.0000.000
47A298ALA0-0.0010.00164.4200.0840.0840.0000.0000.0000.000
48A299ASP-1-0.866-0.93665.422-4.979-4.9790.0000.0000.0000.000
49A300ILE0-0.005-0.00167.8850.0820.0820.0000.0000.0000.000
50A301TYR00.0460.02168.4030.0510.0510.0000.0000.0000.000
51A302LYS10.8660.94268.8124.7214.7210.0000.0000.0000.000
52A303ALA0-0.029-0.01771.5940.0650.0650.0000.0000.0000.000
53A304ASP-1-0.854-0.92874.129-4.308-4.3080.0000.0000.0000.000
54A305PHE0-0.025-0.01574.4000.0740.0740.0000.0000.0000.000
55A306GLN0-0.010-0.01073.5220.0070.0070.0000.0000.0000.000
56A307ALA00.0090.01277.4690.0610.0610.0000.0000.0000.000
57A308GLU-1-0.897-0.95179.601-3.918-3.9180.0000.0000.0000.000
58A309ARG10.8190.91578.8884.1654.1650.0000.0000.0000.000
59A310HIS00.0280.00881.5440.0850.0850.0000.0000.0000.000
60A311ALA00.0270.01483.5000.0600.0600.0000.0000.0000.000
61A312ARG10.9540.97983.7633.9263.9260.0000.0000.0000.000
62A313GLU-1-0.915-0.96283.028-3.933-3.9330.0000.0000.0000.000
63A314LYS10.9760.98187.1153.7493.7490.0000.0000.0000.000
64A315LEU0-0.034-0.01289.3280.0560.0560.0000.0000.0000.000
65A316VAL0-0.040-0.01689.6330.0430.0430.0000.0000.0000.000
66A317GLU-1-0.879-0.93490.141-3.606-3.6060.0000.0000.0000.000
67A318LYS10.9190.95893.5063.4703.4700.0000.0000.0000.000
68A319LYS10.9470.97294.8823.4963.4960.0000.0000.0000.000
69A320GLU-1-0.937-0.96395.718-3.394-3.3940.0000.0000.0000.000
70A321TYR0-0.016-0.01197.6610.0410.0410.0000.0000.0000.000
71A322LEU0-0.028-0.02798.3610.0330.0330.0000.0000.0000.000
72A323GLN0-0.059-0.028100.9160.0200.0200.0000.0000.0000.000
73A324GLU-1-0.780-0.880102.395-3.078-3.0780.0000.0000.0000.000
74A325GLN0-0.044-0.028102.2680.0070.0070.0000.0000.0000.000
75A326LEU0-0.032-0.007105.3930.0360.0360.0000.0000.0000.000
76A327GLU-1-0.877-0.924105.876-3.069-3.0690.0000.0000.0000.000
77A328GLN00.0400.018108.1010.0210.0210.0000.0000.0000.000
78A329LEU0-0.044-0.016109.6010.0290.0290.0000.0000.0000.000
79A330GLN0-0.003-0.006111.2860.0500.0500.0000.0000.0000.000
80A331ARG10.7650.853108.1453.0393.0390.0000.0000.0000.000
81A332GLU-1-0.986-0.980114.037-2.814-2.8140.0000.0000.0000.000
82A333PHE0-0.121-0.054115.7640.0190.0190.0000.0000.0000.000
83A334ASN-1-0.974-0.975117.041-2.698-2.6980.0000.0000.0000.000