FMODB ID: G4Y51
Calculation Name: 4OWF-A-Xray549
Preferred Name:
Target Type:
Ligand Name:
Ligand 3-letter code:
Ligand of Interest (LOI):
Structure Source: PDB
PDB ID: 4OWF
Chain ID: A
UniProt ID: O88522
Base Structure: X-ray
Registration Date: 2025-10-12
Reference: Sci Data 11, 1164 (2024).
DOI: https://doi.org/10.1038/s41597-024-03999-2
Apendix: None
Modeling method
| Optimization | MOE:Amber10:EHT |
|---|---|
| Restraint | OptH |
| Protonation | MOE:Protonate 3D |
| Complement | ac.sh, 23 2024 Oct |
| Water | No |
| Procedure | Manual calculation |
| Remarks |
FMO calculation
| FMO method | FMO2-MP2/6-31G(d) |
|---|---|
| Fragmentation | Auto |
| Number of fragment | 83 |
| LigandResidueName | |
| LigandFragmentNumber | 0 |
| LigandCharge | |
| Software | ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922 |
Total energy (hartree)
| FMO2-HF: Electronic energy | -397990.578687 |
|---|---|
| FMO2-HF: Nuclear repulsion | 363622.415056 |
| FMO2-HF: Total energy | -34368.163631 |
| FMO2-MP2: Total energy | -34469.765997 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
| IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
|---|---|---|---|---|---|
| IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
| N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(A:252:GLN)
Summations of interaction energy for
fragment #1(A:252:GLN)
| IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
|---|---|---|---|---|---|
| IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
| -142.673 | -137.699 | 17.677 | -12.87 | -9.781 | -0.143 |
Interaction energy analysis for fragmet #1(A:252:GLN)
| frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3 | A | 254 | GLU | -1 | -0.874 | -0.926 | 3.492 | -29.456 | -27.193 | -0.003 | -0.924 | -1.336 | -0.001 |
| 4 | A | 255 | ASP | -1 | -0.738 | -0.861 | 1.782 | -133.042 | -131.214 | 17.627 | -11.670 | -7.785 | -0.141 |
| 5 | A | 256 | LEU | 0 | 0.003 | 0.003 | 3.085 | 9.667 | 10.550 | 0.053 | -0.276 | -0.660 | -0.001 |
| 6 | A | 257 | ARG | 1 | 0.864 | 0.927 | 6.033 | 42.184 | 42.184 | 0.000 | 0.000 | 0.000 | 0.000 |
| 7 | A | 258 | GLN | 0 | 0.020 | 0.016 | 7.046 | 1.613 | 1.613 | 0.000 | 0.000 | 0.000 | 0.000 |
| 8 | A | 259 | GLN | 0 | -0.016 | -0.024 | 6.624 | -0.605 | -0.605 | 0.000 | 0.000 | 0.000 | 0.000 |
| 9 | A | 260 | LEU | 0 | -0.017 | -0.003 | 9.778 | 2.606 | 2.606 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10 | A | 261 | GLN | 0 | -0.019 | -0.013 | 12.027 | 1.372 | 1.372 | 0.000 | 0.000 | 0.000 | 0.000 |
| 11 | A | 262 | GLN | 0 | -0.039 | -0.031 | 12.611 | 1.948 | 1.948 | 0.000 | 0.000 | 0.000 | 0.000 |
| 12 | A | 263 | ALA | 0 | -0.040 | -0.019 | 13.966 | 1.426 | 1.426 | 0.000 | 0.000 | 0.000 | 0.000 |
| 13 | A | 264 | GLU | -1 | -0.946 | -0.968 | 15.686 | -15.939 | -15.939 | 0.000 | 0.000 | 0.000 | 0.000 |
| 14 | A | 265 | GLU | -1 | -0.810 | -0.898 | 17.251 | -17.613 | -17.613 | 0.000 | 0.000 | 0.000 | 0.000 |
| 15 | A | 266 | ALA | 0 | -0.031 | -0.012 | 18.268 | 0.996 | 0.996 | 0.000 | 0.000 | 0.000 | 0.000 |
| 16 | A | 267 | LEU | 0 | -0.046 | -0.031 | 19.190 | 0.968 | 0.968 | 0.000 | 0.000 | 0.000 | 0.000 |
| 17 | A | 268 | VAL | 0 | 0.018 | 0.017 | 21.767 | 0.771 | 0.771 | 0.000 | 0.000 | 0.000 | 0.000 |
| 18 | A | 269 | ALA | 0 | 0.040 | 0.020 | 22.966 | 0.629 | 0.629 | 0.000 | 0.000 | 0.000 | 0.000 |
| 19 | A | 270 | LYS | 1 | 0.861 | 0.929 | 22.944 | 13.827 | 13.827 | 0.000 | 0.000 | 0.000 | 0.000 |
| 20 | A | 271 | GLN | 0 | -0.035 | -0.013 | 25.751 | 0.284 | 0.284 | 0.000 | 0.000 | 0.000 | 0.000 |
| 21 | A | 272 | GLU | -1 | -0.860 | -0.937 | 27.767 | -11.245 | -11.245 | 0.000 | 0.000 | 0.000 | 0.000 |
| 22 | A | 273 | LEU | 0 | -0.062 | -0.025 | 28.566 | 0.438 | 0.438 | 0.000 | 0.000 | 0.000 | 0.000 |
| 23 | A | 274 | ILE | 0 | -0.034 | -0.029 | 28.451 | 0.454 | 0.454 | 0.000 | 0.000 | 0.000 | 0.000 |
| 24 | A | 275 | ASP | -1 | -0.858 | -0.934 | 31.790 | -9.729 | -9.729 | 0.000 | 0.000 | 0.000 | 0.000 |
| 25 | A | 276 | LYS | 1 | 0.866 | 0.934 | 33.361 | 9.649 | 9.649 | 0.000 | 0.000 | 0.000 | 0.000 |
| 26 | A | 277 | LEU | 0 | -0.022 | -0.014 | 32.739 | 0.295 | 0.295 | 0.000 | 0.000 | 0.000 | 0.000 |
| 27 | A | 278 | LYS | 1 | 0.884 | 0.956 | 34.330 | 9.524 | 9.524 | 0.000 | 0.000 | 0.000 | 0.000 |
| 28 | A | 279 | GLU | -1 | -0.863 | -0.926 | 38.173 | -8.019 | -8.019 | 0.000 | 0.000 | 0.000 | 0.000 |
| 29 | A | 280 | GLU | -1 | -0.878 | -0.944 | 37.477 | -8.550 | -8.550 | 0.000 | 0.000 | 0.000 | 0.000 |
| 30 | A | 281 | ALA | 0 | 0.001 | -0.011 | 40.166 | 0.242 | 0.242 | 0.000 | 0.000 | 0.000 | 0.000 |
| 31 | A | 282 | GLU | -1 | -0.963 | -0.967 | 41.942 | -7.440 | -7.440 | 0.000 | 0.000 | 0.000 | 0.000 |
| 32 | A | 283 | GLN | 0 | -0.014 | -0.003 | 42.957 | 0.205 | 0.205 | 0.000 | 0.000 | 0.000 | 0.000 |
| 33 | A | 284 | HIS | 0 | 0.026 | 0.001 | 42.189 | 0.320 | 0.320 | 0.000 | 0.000 | 0.000 | 0.000 |
| 34 | A | 285 | LYS | 1 | 0.867 | 0.931 | 42.973 | 7.555 | 7.555 | 0.000 | 0.000 | 0.000 | 0.000 |
| 35 | A | 286 | ILE | 0 | 0.042 | 0.027 | 48.197 | 0.156 | 0.156 | 0.000 | 0.000 | 0.000 | 0.000 |
| 36 | A | 287 | VAL | 0 | 0.009 | 0.011 | 49.548 | 0.159 | 0.159 | 0.000 | 0.000 | 0.000 | 0.000 |
| 37 | A | 288 | MET | 0 | -0.034 | -0.012 | 47.867 | 0.095 | 0.095 | 0.000 | 0.000 | 0.000 | 0.000 |
| 38 | A | 289 | GLU | -1 | -0.929 | -0.966 | 51.645 | -6.185 | -6.185 | 0.000 | 0.000 | 0.000 | 0.000 |
| 39 | A | 290 | THR | 0 | -0.054 | -0.035 | 54.153 | 0.169 | 0.169 | 0.000 | 0.000 | 0.000 | 0.000 |
| 40 | A | 291 | VAL | 0 | 0.001 | 0.006 | 53.783 | 0.138 | 0.138 | 0.000 | 0.000 | 0.000 | 0.000 |
| 41 | A | 292 | PRO | 0 | -0.017 | -0.016 | 56.124 | 0.115 | 0.115 | 0.000 | 0.000 | 0.000 | 0.000 |
| 42 | A | 293 | VAL | 0 | 0.018 | 0.014 | 59.355 | 0.117 | 0.117 | 0.000 | 0.000 | 0.000 | 0.000 |
| 43 | A | 294 | LEU | 0 | 0.010 | 0.004 | 57.502 | 0.110 | 0.110 | 0.000 | 0.000 | 0.000 | 0.000 |
| 44 | A | 295 | LYS | 1 | 0.830 | 0.909 | 60.266 | 5.272 | 5.272 | 0.000 | 0.000 | 0.000 | 0.000 |
| 45 | A | 296 | ALA | 0 | 0.030 | 0.015 | 62.161 | 0.088 | 0.088 | 0.000 | 0.000 | 0.000 | 0.000 |
| 46 | A | 297 | GLN | 0 | -0.008 | -0.001 | 64.679 | 0.065 | 0.065 | 0.000 | 0.000 | 0.000 | 0.000 |
| 47 | A | 298 | ALA | 0 | -0.001 | 0.001 | 64.420 | 0.084 | 0.084 | 0.000 | 0.000 | 0.000 | 0.000 |
| 48 | A | 299 | ASP | -1 | -0.866 | -0.936 | 65.422 | -4.979 | -4.979 | 0.000 | 0.000 | 0.000 | 0.000 |
| 49 | A | 300 | ILE | 0 | -0.005 | -0.001 | 67.885 | 0.082 | 0.082 | 0.000 | 0.000 | 0.000 | 0.000 |
| 50 | A | 301 | TYR | 0 | 0.046 | 0.021 | 68.403 | 0.051 | 0.051 | 0.000 | 0.000 | 0.000 | 0.000 |
| 51 | A | 302 | LYS | 1 | 0.866 | 0.942 | 68.812 | 4.721 | 4.721 | 0.000 | 0.000 | 0.000 | 0.000 |
| 52 | A | 303 | ALA | 0 | -0.029 | -0.017 | 71.594 | 0.065 | 0.065 | 0.000 | 0.000 | 0.000 | 0.000 |
| 53 | A | 304 | ASP | -1 | -0.854 | -0.928 | 74.129 | -4.308 | -4.308 | 0.000 | 0.000 | 0.000 | 0.000 |
| 54 | A | 305 | PHE | 0 | -0.025 | -0.015 | 74.400 | 0.074 | 0.074 | 0.000 | 0.000 | 0.000 | 0.000 |
| 55 | A | 306 | GLN | 0 | -0.010 | -0.010 | 73.522 | 0.007 | 0.007 | 0.000 | 0.000 | 0.000 | 0.000 |
| 56 | A | 307 | ALA | 0 | 0.009 | 0.012 | 77.469 | 0.061 | 0.061 | 0.000 | 0.000 | 0.000 | 0.000 |
| 57 | A | 308 | GLU | -1 | -0.897 | -0.951 | 79.601 | -3.918 | -3.918 | 0.000 | 0.000 | 0.000 | 0.000 |
| 58 | A | 309 | ARG | 1 | 0.819 | 0.915 | 78.888 | 4.165 | 4.165 | 0.000 | 0.000 | 0.000 | 0.000 |
| 59 | A | 310 | HIS | 0 | 0.028 | 0.008 | 81.544 | 0.085 | 0.085 | 0.000 | 0.000 | 0.000 | 0.000 |
| 60 | A | 311 | ALA | 0 | 0.027 | 0.014 | 83.500 | 0.060 | 0.060 | 0.000 | 0.000 | 0.000 | 0.000 |
| 61 | A | 312 | ARG | 1 | 0.954 | 0.979 | 83.763 | 3.926 | 3.926 | 0.000 | 0.000 | 0.000 | 0.000 |
| 62 | A | 313 | GLU | -1 | -0.915 | -0.962 | 83.028 | -3.933 | -3.933 | 0.000 | 0.000 | 0.000 | 0.000 |
| 63 | A | 314 | LYS | 1 | 0.976 | 0.981 | 87.115 | 3.749 | 3.749 | 0.000 | 0.000 | 0.000 | 0.000 |
| 64 | A | 315 | LEU | 0 | -0.034 | -0.012 | 89.328 | 0.056 | 0.056 | 0.000 | 0.000 | 0.000 | 0.000 |
| 65 | A | 316 | VAL | 0 | -0.040 | -0.016 | 89.633 | 0.043 | 0.043 | 0.000 | 0.000 | 0.000 | 0.000 |
| 66 | A | 317 | GLU | -1 | -0.879 | -0.934 | 90.141 | -3.606 | -3.606 | 0.000 | 0.000 | 0.000 | 0.000 |
| 67 | A | 318 | LYS | 1 | 0.919 | 0.958 | 93.506 | 3.470 | 3.470 | 0.000 | 0.000 | 0.000 | 0.000 |
| 68 | A | 319 | LYS | 1 | 0.947 | 0.972 | 94.882 | 3.496 | 3.496 | 0.000 | 0.000 | 0.000 | 0.000 |
| 69 | A | 320 | GLU | -1 | -0.937 | -0.963 | 95.718 | -3.394 | -3.394 | 0.000 | 0.000 | 0.000 | 0.000 |
| 70 | A | 321 | TYR | 0 | -0.016 | -0.011 | 97.661 | 0.041 | 0.041 | 0.000 | 0.000 | 0.000 | 0.000 |
| 71 | A | 322 | LEU | 0 | -0.028 | -0.027 | 98.361 | 0.033 | 0.033 | 0.000 | 0.000 | 0.000 | 0.000 |
| 72 | A | 323 | GLN | 0 | -0.059 | -0.028 | 100.916 | 0.020 | 0.020 | 0.000 | 0.000 | 0.000 | 0.000 |
| 73 | A | 324 | GLU | -1 | -0.780 | -0.880 | 102.395 | -3.078 | -3.078 | 0.000 | 0.000 | 0.000 | 0.000 |
| 74 | A | 325 | GLN | 0 | -0.044 | -0.028 | 102.268 | 0.007 | 0.007 | 0.000 | 0.000 | 0.000 | 0.000 |
| 75 | A | 326 | LEU | 0 | -0.032 | -0.007 | 105.393 | 0.036 | 0.036 | 0.000 | 0.000 | 0.000 | 0.000 |
| 76 | A | 327 | GLU | -1 | -0.877 | -0.924 | 105.876 | -3.069 | -3.069 | 0.000 | 0.000 | 0.000 | 0.000 |
| 77 | A | 328 | GLN | 0 | 0.040 | 0.018 | 108.101 | 0.021 | 0.021 | 0.000 | 0.000 | 0.000 | 0.000 |
| 78 | A | 329 | LEU | 0 | -0.044 | -0.016 | 109.601 | 0.029 | 0.029 | 0.000 | 0.000 | 0.000 | 0.000 |
| 79 | A | 330 | GLN | 0 | -0.003 | -0.006 | 111.286 | 0.050 | 0.050 | 0.000 | 0.000 | 0.000 | 0.000 |
| 80 | A | 331 | ARG | 1 | 0.765 | 0.853 | 108.145 | 3.039 | 3.039 | 0.000 | 0.000 | 0.000 | 0.000 |
| 81 | A | 332 | GLU | -1 | -0.986 | -0.980 | 114.037 | -2.814 | -2.814 | 0.000 | 0.000 | 0.000 | 0.000 |
| 82 | A | 333 | PHE | 0 | -0.121 | -0.054 | 115.764 | 0.019 | 0.019 | 0.000 | 0.000 | 0.000 | 0.000 |
| 83 | A | 334 | ASN | -1 | -0.974 | -0.975 | 117.041 | -2.698 | -2.698 | 0.000 | 0.000 | 0.000 | 0.000 |