FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: G5R11

Calculation Name: 1ZTP-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1ZTP

Chain ID: A

ChEMBL ID:

UniProt ID: Q9H3H3

Base Structure: X-ray

Registration Date: 2023-09-23

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 234
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2664193.287961
FMO2-HF: Nuclear repulsion 2574806.539262
FMO2-HF: Total energy -89386.748699
FMO2-MP2: Total energy -89649.406728


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:17:GLU)


Summations of interaction energy for fragment #1(A:17:GLU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
19.04720.2155.108-2.259-4.0180.001
Interaction energy analysis for fragmet #1(A:17:GLU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : -1 / q_Mulliken : -0.968 / q_NPA : -1.001
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A19GLY00.0320.0313.526-5.369-3.5640.001-0.809-0.9990.002
4A20PHE0-0.050-0.0291.870-2.423-3.2265.108-1.432-2.873-0.001
5A21THR0-0.059-0.0284.592-2.123-1.957-0.001-0.018-0.1460.000
6A22ALA00.015-0.0016.870-1.512-1.5120.0000.0000.0000.000
7A23GLU-1-0.912-0.96310.52521.91021.9100.0000.0000.0000.000
8A24HIS00.0110.0118.166-1.082-1.0820.0000.0000.0000.000
9A25LEU00.008-0.0128.151-1.466-1.4660.0000.0000.0000.000
10A26ALA0-0.057-0.01010.783-1.393-1.3930.0000.0000.0000.000
11A27ALA0-0.056-0.03813.760-1.020-1.0200.0000.0000.0000.000
12A28GLU-1-0.942-0.96011.18119.09219.0920.0000.0000.0000.000
13A29ALA0-0.035-0.00913.902-0.614-0.6140.0000.0000.0000.000
14A30MET0-0.054-0.02016.189-0.981-0.9810.0000.0000.0000.000
15A31ALA00.010-0.00619.412-0.081-0.0810.0000.0000.0000.000
16A32ALA0-0.046-0.04122.621-0.193-0.1930.0000.0000.0000.000
17A33ASP-1-0.892-0.94526.1249.7189.7180.0000.0000.0000.000
18A34MET0-0.0040.01720.1430.1390.1390.0000.0000.0000.000
19A35ASP-1-0.787-0.86225.55910.22510.2250.0000.0000.0000.000
20A36PRO00.0300.01828.858-0.013-0.0130.0000.0000.0000.000
21A37TRP0-0.074-0.06330.571-0.342-0.3420.0000.0000.0000.000
22A38LEU0-0.0070.00533.698-0.014-0.0140.0000.0000.0000.000
23A39VAL0-0.024-0.02635.002-0.092-0.0920.0000.0000.0000.000
24A40PHE00.0020.02438.157-0.057-0.0570.0000.0000.0000.000
25A41ASP-1-0.783-0.90437.4088.2568.2560.0000.0000.0000.000
26A42ALA00.0530.01140.309-0.089-0.0890.0000.0000.0000.000
27A43ARG10.7060.84235.518-8.498-8.4980.0000.0000.0000.000
28A44THR0-0.0180.00238.4560.0140.0140.0000.0000.0000.000
29A45THR0-0.0310.00541.6670.0050.0050.0000.0000.0000.000
30A46PRO00.0210.02444.200-0.064-0.0640.0000.0000.0000.000
31A47ALA00.0600.00848.0010.0040.0040.0000.0000.0000.000
32A48THR0-0.023-0.01549.446-0.010-0.0100.0000.0000.0000.000
33A49GLU-1-0.904-0.96247.3006.6256.6250.0000.0000.0000.000
34A50LEU0-0.0220.00546.4170.0580.0580.0000.0000.0000.000
35A51ASP-1-0.897-0.96048.5206.0156.0150.0000.0000.0000.000
36A52ALA00.0220.00749.504-0.017-0.0170.0000.0000.0000.000
37A53TRP0-0.0070.00540.568-0.010-0.0100.0000.0000.0000.000
38A54LEU0-0.048-0.04146.2610.0630.0630.0000.0000.0000.000
39A55ALA0-0.029-0.00247.956-0.004-0.0040.0000.0000.0000.000
40A56LYS10.9110.96843.388-7.114-7.1140.0000.0000.0000.000
41A57TYR0-0.007-0.01341.5470.0900.0900.0000.0000.0000.000
42A58PRO00.0540.04544.5660.0810.0810.0000.0000.0000.000
43A59PRO00.0470.00943.5350.0870.0870.0000.0000.0000.000
44A60SER0-0.106-0.07644.3350.0530.0530.0000.0000.0000.000
45A61GLN0-0.012-0.01645.993-0.013-0.0130.0000.0000.0000.000
46A62VAL00.0500.03839.8220.0600.0600.0000.0000.0000.000
47A63THR0-0.008-0.00140.0920.0780.0780.0000.0000.0000.000
48A64ARG10.7540.86330.540-9.235-9.2350.0000.0000.0000.000
49A65TYR00.005-0.02831.9640.2720.2720.0000.0000.0000.000
50A66GLY00.0510.04535.9810.1130.1130.0000.0000.0000.000
51A67ASP-1-0.877-0.93637.9567.7037.7030.0000.0000.0000.000
52A68PRO00.022-0.00140.512-0.094-0.0940.0000.0000.0000.000
53A69GLY0-0.020-0.00743.164-0.097-0.0970.0000.0000.0000.000
54A70SER0-0.030-0.00241.638-0.140-0.1400.0000.0000.0000.000
55A71PRO0-0.053-0.02143.0030.0370.0370.0000.0000.0000.000
56A72ASN0-0.071-0.04837.140-0.145-0.1450.0000.0000.0000.000
57A73SER00.0460.01136.821-0.111-0.1110.0000.0000.0000.000
58A74GLU-1-0.935-0.95131.7739.6409.6400.0000.0000.0000.000
59A75PRO0-0.0020.00231.644-0.272-0.2720.0000.0000.0000.000
60A76VAL0-0.0020.01232.9340.1240.1240.0000.0000.0000.000
61A77GLY00.0090.00432.230-0.159-0.1590.0000.0000.0000.000
62A78TRP0-0.074-0.05132.828-0.401-0.4010.0000.0000.0000.000
63A79ILE00.0280.03235.8510.0670.0670.0000.0000.0000.000
64A80ALA0-0.041-0.04036.843-0.052-0.0520.0000.0000.0000.000
65A81VAL0-0.002-0.00438.884-0.060-0.0600.0000.0000.0000.000
66A82TYR0-0.0020.00433.9900.0500.0500.0000.0000.0000.000
67A83GLY00.0900.03340.442-0.109-0.1090.0000.0000.0000.000
68A84GLN00.004-0.02541.7930.2240.2240.0000.0000.0000.000
69A85GLY00.0210.01442.064-0.079-0.0790.0000.0000.0000.000
70A86TYR0-0.025-0.00233.8600.0780.0780.0000.0000.0000.000
71A87SER0-0.009-0.00835.8060.1200.1200.0000.0000.0000.000
72A88PRO0-0.0190.00431.176-0.096-0.0960.0000.0000.0000.000
73A89ASN00.031-0.00532.8850.2430.2430.0000.0000.0000.000
74A90SER0-0.050-0.01029.791-0.105-0.1050.0000.0000.0000.000
75A91GLY00.0390.02031.936-0.039-0.0390.0000.0000.0000.000
76A92ASP-1-0.871-0.94127.76511.00211.0020.0000.0000.0000.000
77A93VAL00.005-0.02426.090-0.150-0.1500.0000.0000.0000.000
78A94GLN00.0220.02021.6380.4370.4370.0000.0000.0000.000
79A95GLY00.0290.01625.2360.0170.0170.0000.0000.0000.000
80A96LEU0-0.050-0.02227.905-0.211-0.2110.0000.0000.0000.000
81A97GLN00.015-0.01125.237-0.062-0.0620.0000.0000.0000.000
82A98ALA00.0250.03425.429-0.021-0.0210.0000.0000.0000.000
83A99ALA0-0.022-0.03226.649-0.226-0.2260.0000.0000.0000.000
84A100TRP0-0.018-0.02529.025-0.475-0.4750.0000.0000.0000.000
85A101GLU-1-0.908-0.94324.67911.14811.1480.0000.0000.0000.000
86A102ALA00.0300.02228.810-0.122-0.1220.0000.0000.0000.000
87A103LEU0-0.048-0.02630.426-0.342-0.3420.0000.0000.0000.000
88A104GLN0-0.085-0.05430.685-0.106-0.1060.0000.0000.0000.000
89A105THR00.0300.01529.403-0.181-0.1810.0000.0000.0000.000
90A106SER0-0.046-0.01832.436-0.237-0.2370.0000.0000.0000.000
91A107GLY0-0.0210.01735.541-0.206-0.2060.0000.0000.0000.000
92A108ARG10.9090.92637.931-7.369-7.3690.0000.0000.0000.000
93A109PRO0-0.0030.01639.1750.0610.0610.0000.0000.0000.000
94A110ILE00.0500.02535.8470.0210.0210.0000.0000.0000.000
95A111THR00.0030.00039.847-0.100-0.1000.0000.0000.0000.000
96A112PRO00.0550.01441.0110.1540.1540.0000.0000.0000.000
97A113GLY00.0190.01342.3200.0430.0430.0000.0000.0000.000
98A114THR00.011-0.00539.1550.0550.0550.0000.0000.0000.000
99A115LEU0-0.0010.00235.9210.1620.1620.0000.0000.0000.000
100A116ARG10.9600.98838.162-6.643-6.6430.0000.0000.0000.000
101A117GLN00.0050.00339.8020.1120.1120.0000.0000.0000.000
102A118LEU00.0190.01433.4980.0620.0620.0000.0000.0000.000
103A119ALA00.0310.00935.5390.1820.1820.0000.0000.0000.000
104A120ILE00.0000.00536.7430.0320.0320.0000.0000.0000.000
105A121THR0-0.049-0.02235.153-0.019-0.0190.0000.0000.0000.000
106A122HIS00.0230.01131.1930.1260.1260.0000.0000.0000.000
107A123HIS0-0.0090.01033.2680.1310.1310.0000.0000.0000.000
108A124VAL0-0.046-0.00831.5500.0910.0910.0000.0000.0000.000
109A125LEU00.004-0.01034.737-0.094-0.0940.0000.0000.0000.000
110A126SER00.0280.01936.019-0.173-0.1730.0000.0000.0000.000
111A127GLY00.008-0.01237.8230.1030.1030.0000.0000.0000.000
112A128LYS10.7660.89935.731-8.324-8.3240.0000.0000.0000.000
113A129TRP0-0.0100.00141.016-0.056-0.0560.0000.0000.0000.000
114A130LEU0-0.030-0.01239.5410.1150.1150.0000.0000.0000.000
115A131MET00.0150.01343.695-0.234-0.2340.0000.0000.0000.000
116A132HIS00.013-0.00144.7570.1620.1620.0000.0000.0000.000
117A133LEU0-0.050-0.03546.456-0.202-0.2020.0000.0000.0000.000
118A134ALA0-0.0210.00047.3010.1290.1290.0000.0000.0000.000
119A135PRO00.0600.03846.807-0.095-0.0950.0000.0000.0000.000
120A136GLY00.0300.01248.675-0.122-0.1220.0000.0000.0000.000
121A137PHE00.0480.02151.2860.0670.0670.0000.0000.0000.000
122A138LYS10.9460.96453.385-5.445-5.4450.0000.0000.0000.000
123A139LEU00.0130.01945.639-0.012-0.0120.0000.0000.0000.000
124A140ASP-1-0.765-0.85148.7196.4366.4360.0000.0000.0000.000
125A141HIS0-0.031-0.01550.1320.0390.0390.0000.0000.0000.000
126A142ALA00.011-0.00350.277-0.019-0.0190.0000.0000.0000.000
127A143TRP00.0400.01342.1580.0110.0110.0000.0000.0000.000
128A144ALA00.0060.01048.0380.0350.0350.0000.0000.0000.000
129A145GLY0-0.002-0.00150.119-0.002-0.0020.0000.0000.0000.000
130A146ILE00.014-0.00745.958-0.001-0.0010.0000.0000.0000.000
131A147ALA00.0080.01046.0310.0670.0670.0000.0000.0000.000
132A148ARG10.9650.97147.003-5.869-5.8690.0000.0000.0000.000
133A149ALA0-0.007-0.00849.706-0.041-0.0410.0000.0000.0000.000
134A150VAL0-0.079-0.02943.2250.0080.0080.0000.0000.0000.000
135A151VAL0-0.023-0.01345.9220.0250.0250.0000.0000.0000.000
136A152GLU-1-0.889-0.93347.6125.8235.8230.0000.0000.0000.000
137A153GLY0-0.0060.01147.778-0.064-0.0640.0000.0000.0000.000
138A154ARG10.8120.90048.866-5.936-5.9360.0000.0000.0000.000
139A155LEU0-0.029-0.01245.8450.0180.0180.0000.0000.0000.000
140A156GLN00.0190.00941.3040.1520.1520.0000.0000.0000.000
141A157VAL00.0090.00337.7900.1220.1220.0000.0000.0000.000
142A158ALA0-0.014-0.00841.256-0.116-0.1160.0000.0000.0000.000
143A159LYS10.9280.98233.617-8.795-8.7950.0000.0000.0000.000
144A160VAL00.0060.00639.919-0.184-0.1840.0000.0000.0000.000
145A161SER00.0120.00938.4270.0960.0960.0000.0000.0000.000
146A162PRO00.0130.02537.053-0.256-0.2560.0000.0000.0000.000
147A163ARG10.8880.93840.077-6.616-6.6160.0000.0000.0000.000
148A164ALA00.0170.00839.6900.1760.1760.0000.0000.0000.000
149A165LYS10.9170.96437.116-8.198-8.1980.0000.0000.0000.000
150A166GLU-1-0.924-0.96041.2787.2237.2230.0000.0000.0000.000
151A167GLY0-0.013-0.01244.2520.0080.0080.0000.0000.0000.000
152A168GLY00.0520.04443.9390.0940.0940.0000.0000.0000.000
153A169ARG10.8380.89943.877-6.462-6.4620.0000.0000.0000.000
154A170GLN0-0.043-0.03942.2570.0380.0380.0000.0000.0000.000
155A171VAL0-0.008-0.00839.638-0.188-0.1880.0000.0000.0000.000
156A172ILE00.0400.01542.2690.0720.0720.0000.0000.0000.000
157A173CYS0-0.071-0.04038.186-0.071-0.0710.0000.0000.0000.000
158A174VAL00.0420.01941.7060.0350.0350.0000.0000.0000.000
159A175TYR0-0.014-0.01735.9570.0000.0000.0000.0000.0000.000
160A176THR00.0270.02441.289-0.157-0.1570.0000.0000.0000.000
161A177ASP-1-0.799-0.91539.9627.4607.4600.0000.0000.0000.000
162A178ASP-1-0.750-0.83740.0197.3257.3250.0000.0000.0000.000
163A179PHE0-0.072-0.03839.048-0.213-0.2130.0000.0000.0000.000
164A180THR0-0.163-0.12642.664-0.196-0.1960.0000.0000.0000.000
165A181ASP-1-0.802-0.89545.2766.2196.2190.0000.0000.0000.000
166A182ARG10.9390.94647.582-5.705-5.7050.0000.0000.0000.000
167A183LEU0-0.017-0.00750.267-0.067-0.0670.0000.0000.0000.000
168A184GLY00.1280.07948.142-0.053-0.0530.0000.0000.0000.000
169A185VAL0-0.059-0.02546.0590.0430.0430.0000.0000.0000.000
170A186LEU0-0.015-0.02848.329-0.027-0.0270.0000.0000.0000.000
171A187GLU-1-0.880-0.92751.0465.9285.9280.0000.0000.0000.000
172A188ALA00.0320.01847.443-0.020-0.0200.0000.0000.0000.000
173A189ASP-1-0.825-0.87549.4425.8345.8340.0000.0000.0000.000
174A190SER0-0.013-0.02051.459-0.110-0.1100.0000.0000.0000.000
175A191ALA0-0.0030.00450.874-0.093-0.0930.0000.0000.0000.000
176A192ILE0-0.0100.00147.511-0.036-0.0360.0000.0000.0000.000
177A193ARG10.7380.83451.756-5.897-5.8970.0000.0000.0000.000
178A194ALA0-0.0040.00755.300-0.091-0.0910.0000.0000.0000.000
179A195ALA0-0.0140.01352.927-0.060-0.0600.0000.0000.0000.000
180A196GLY0-0.040-0.02254.961-0.011-0.0110.0000.0000.0000.000
181A197ILE0-0.0160.00551.002-0.045-0.0450.0000.0000.0000.000
182A198LYS10.9310.95654.353-5.241-5.2410.0000.0000.0000.000
183A199CYS0-0.063-0.01950.815-0.046-0.0460.0000.0000.0000.000
184A200LEU0-0.0120.00349.383-0.041-0.0410.0000.0000.0000.000
185A201LEU00.0190.02748.1320.1060.1060.0000.0000.0000.000
186A202THR0-0.041-0.03045.186-0.051-0.0510.0000.0000.0000.000
187A203TYR00.0620.01141.9540.1560.1560.0000.0000.0000.000
188A204LYS10.8860.95436.423-8.049-8.0490.0000.0000.0000.000
189A205PRO00.0440.01738.6970.1100.1100.0000.0000.0000.000
190A206ASP-1-0.796-0.86833.7908.6288.6280.0000.0000.0000.000
191A207VAL00.0690.04933.5810.2310.2310.0000.0000.0000.000
192A208TYR0-0.016-0.00733.3920.1730.1730.0000.0000.0000.000
193A209THR0-0.047-0.02631.479-0.024-0.0240.0000.0000.0000.000
194A210TYR00.0430.01228.1800.2620.2620.0000.0000.0000.000
195A211LEU0-0.026-0.00828.8140.3100.3100.0000.0000.0000.000
196A212GLY00.0170.01330.549-0.070-0.0700.0000.0000.0000.000
197A213ILE0-0.032-0.00231.321-0.196-0.1960.0000.0000.0000.000
198A214TYR0-0.030-0.03029.765-0.259-0.2590.0000.0000.0000.000
199A215ARG10.9510.96435.164-8.283-8.2830.0000.0000.0000.000
200A216ALA00.0270.01037.598-0.139-0.1390.0000.0000.0000.000
201A217ASN00.0210.03036.3800.1660.1660.0000.0000.0000.000
202A218ARG11.0151.01232.179-9.041-9.0410.0000.0000.0000.000
203A219TRP00.0130.00331.577-0.180-0.1800.0000.0000.0000.000
204A220HIS0-0.069-0.03638.393-0.260-0.2600.0000.0000.0000.000
205A221LEU00.0310.02238.293-0.207-0.2070.0000.0000.0000.000
206A222CYS0-0.044-0.01540.8830.0410.0410.0000.0000.0000.000
207A223PRO0-0.010-0.01139.1200.0470.0470.0000.0000.0000.000
208A224THR0-0.044-0.03140.6450.1520.1520.0000.0000.0000.000
209A225LEU00.0410.02842.631-0.078-0.0780.0000.0000.0000.000
210A226TYR00.0200.01645.130-0.195-0.1950.0000.0000.0000.000
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