FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: G6161

Calculation Name: 4ELO-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4ELO

Chain ID: A

ChEMBL ID:

UniProt ID: Q5SHV2

Base Structure: X-ray

Registration Date: 2023-09-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 308
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -4507913.960297
FMO2-HF: Nuclear repulsion 4391174.532536
FMO2-HF: Total energy -116739.42776
FMO2-MP2: Total energy -117086.690124


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:23:THR)


Summations of interaction energy for fragment #1(A:23:THR)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-31.458-23.64211.49-8.174-11.131-0.003
Interaction energy analysis for fragmet #1(A:23:THR)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.029 / q_NPA : -0.013
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A25THR00.0110.0153.106-0.5132.0280.124-1.308-1.357-0.003
4A26ILE00.0110.0075.0250.3250.345-0.001-0.001-0.0180.000
5A27TYR00.0140.0018.5290.3630.3630.0000.0000.0000.000
6A28SER00.008-0.01711.744-0.068-0.0680.0000.0000.0000.000
7A29GLY00.0100.00214.1580.0980.0980.0000.0000.0000.000
8A30ARG10.7400.85617.0800.5460.5460.0000.0000.0000.000
9A31GLY00.0510.01916.887-0.031-0.0310.0000.0000.0000.000
10A32GLN00.013-0.01415.034-0.036-0.0360.0000.0000.0000.000
11A33SER0-0.018-0.01216.952-0.027-0.0270.0000.0000.0000.000
12A34LEU0-0.0270.00418.6390.0140.0140.0000.0000.0000.000
13A35VAL00.0030.01513.137-0.027-0.0270.0000.0000.0000.000
14A36GLU-1-0.797-0.87012.863-0.262-0.2620.0000.0000.0000.000
15A37PRO00.0070.00013.753-0.003-0.0030.0000.0000.0000.000
16A38LEU00.0490.03614.869-0.002-0.0020.0000.0000.0000.000
17A39VAL0-0.037-0.0148.911-0.117-0.1170.0000.0000.0000.000
18A40LYS10.8550.9018.551-0.040-0.0400.0000.0000.0000.000
19A41GLN0-0.015-0.01211.8590.1100.1100.0000.0000.0000.000
20A42PHE00.0260.0036.6910.0040.0040.0000.0000.0000.000
21A43GLU-1-0.790-0.8636.440-0.040-0.0400.0000.0000.0000.000
22A44ALA0-0.020-0.0068.4870.2130.2130.0000.0000.0000.000
23A45GLU-1-0.911-0.93911.804-0.472-0.4720.0000.0000.0000.000
24A46THR0-0.098-0.0688.038-0.276-0.2760.0000.0000.0000.000
25A47GLY00.0110.0227.771-0.082-0.0820.0000.0000.0000.000
26A48ILE0-0.095-0.0492.8830.1280.8360.093-0.190-0.611-0.001
27A49ARG10.9590.9761.951-25.994-25.4398.890-3.826-5.6200.030
28A50VAL0-0.016-0.0272.519-6.934-4.5282.175-2.327-2.253-0.026
29A51GLN0-0.0290.0012.9121.2262.0690.204-0.249-0.799-0.001
30A52VAL00.017-0.0055.242-0.587-0.592-0.0010.0000.0070.000
31A53ARG10.9330.9868.7300.7110.7110.0000.0000.0000.000
32A54TYR00.007-0.03411.444-0.134-0.1340.0000.0000.0000.000
33A55SER0-0.038-0.02814.6830.0750.0750.0000.0000.0000.000
34A56THR00.018-0.00117.612-0.019-0.0190.0000.0000.0000.000
35A57ASP-1-0.711-0.87019.480-0.510-0.5100.0000.0000.0000.000
36A58ALA00.0170.01420.505-0.022-0.0220.0000.0000.0000.000
37A59GLN00.0550.04619.612-0.015-0.0150.0000.0000.0000.000
38A60ILE0-0.0110.01115.0600.0010.0010.0000.0000.0000.000
39A61LEU0-0.019-0.00217.595-0.025-0.0250.0000.0000.0000.000
40A62ALA00.006-0.00220.1840.0020.0020.0000.0000.0000.000
41A63ALA0-0.015-0.01016.3790.0160.0160.0000.0000.0000.000
42A64LEU0-0.012-0.01113.826-0.016-0.0160.0000.0000.0000.000
43A65GLN0-0.042-0.01917.5750.0240.0240.0000.0000.0000.000
44A66GLU-1-0.839-0.88219.496-0.178-0.1780.0000.0000.0000.000
45A67GLU-1-0.841-0.92914.054-0.350-0.3500.0000.0000.0000.000
46A68GLY00.0220.01817.5900.0120.0120.0000.0000.0000.000
47A69SER0-0.053-0.05216.600-0.080-0.0800.0000.0000.0000.000
48A70ARG10.7760.86615.2220.1870.1870.0000.0000.0000.000
49A71SER0-0.0190.01112.556-0.026-0.0260.0000.0000.0000.000
50A72PRO00.0130.0077.718-0.156-0.1560.0000.0000.0000.000
51A73ALA0-0.038-0.0137.295-0.591-0.5910.0000.0000.0000.000
52A74ASP-1-0.695-0.8355.898-5.295-5.2950.0000.0000.0000.000
53A75LEU0-0.015-0.0079.1160.2450.2450.0000.0000.0000.000
54A76PHE0-0.0090.00611.1820.1030.1030.0000.0000.0000.000
55A77TRP00.0240.00113.491-0.016-0.0160.0000.0000.0000.000
56A78ALA00.0020.01115.5880.0580.0580.0000.0000.0000.000
57A79ASN0-0.022-0.04119.019-0.003-0.0030.0000.0000.0000.000
58A80THR0-0.011-0.02721.9410.0350.0350.0000.0000.0000.000
59A81ALA00.0600.02523.251-0.034-0.0340.0000.0000.0000.000
60A82GLY00.0420.03425.166-0.011-0.0110.0000.0000.0000.000
61A83ALA0-0.005-0.00121.8340.0010.0010.0000.0000.0000.000
62A84LEU0-0.0080.00418.709-0.028-0.0280.0000.0000.0000.000
63A85GLY00.0290.02322.007-0.019-0.0190.0000.0000.0000.000
64A86GLN00.013-0.00324.279-0.002-0.0020.0000.0000.0000.000
65A87ALA00.009-0.00519.5090.0040.0040.0000.0000.0000.000
66A88SER0-0.047-0.01321.626-0.023-0.0230.0000.0000.0000.000
67A89ALA00.0180.01123.4000.0100.0100.0000.0000.0000.000
68A90LYS10.8400.92522.9960.3600.3600.0000.0000.0000.000
69A91GLY00.0080.01823.268-0.003-0.0030.0000.0000.0000.000
70A92LEU00.0160.00318.072-0.034-0.0340.0000.0000.0000.000
71A93LEU0-0.0250.00516.697-0.115-0.1150.0000.0000.0000.000
72A94ARG10.9370.96515.5011.1641.1640.0000.0000.0000.000
73A95PRO00.009-0.00218.834-0.035-0.0350.0000.0000.0000.000
74A96LEU0-0.0230.00016.953-0.104-0.1040.0000.0000.0000.000
75A97GLY00.0260.01219.2390.0740.0740.0000.0000.0000.000
76A98GLU-1-0.895-0.95921.072-0.476-0.4760.0000.0000.0000.000
77A99THR00.0420.02220.641-0.006-0.0060.0000.0000.0000.000
78A100LEU0-0.050-0.01816.564-0.017-0.0170.0000.0000.0000.000
79A101LEU0-0.041-0.03420.4120.0260.0260.0000.0000.0000.000
80A102GLU-1-0.836-0.90623.538-0.470-0.4700.0000.0000.0000.000
81A103LYS10.7820.88420.9430.6320.6320.0000.0000.0000.000
82A104PRO0-0.046-0.02023.3090.0250.0250.0000.0000.0000.000
83A105ILE0-0.004-0.00826.0110.0170.0170.0000.0000.0000.000
84A106ALA00.0100.00729.0040.0250.0250.0000.0000.0000.000
85A107PHE00.010-0.02328.128-0.028-0.0280.0000.0000.0000.000
86A108VAL00.0030.01325.455-0.029-0.0290.0000.0000.0000.000
87A109PRO0-0.0400.00523.9690.0360.0360.0000.0000.0000.000
88A110ALA00.0420.01127.300-0.008-0.0080.0000.0000.0000.000
89A111SER0-0.074-0.06925.454-0.018-0.0180.0000.0000.0000.000
90A112ARG10.9460.98124.8090.4750.4750.0000.0000.0000.000
91A113THR0-0.012-0.01721.119-0.062-0.0620.0000.0000.0000.000
92A114TRP0-0.032-0.03719.483-0.097-0.0970.0000.0000.0000.000
93A115VAL00.0250.01118.3660.0570.0570.0000.0000.0000.000
94A116PRO0-0.0140.00320.439-0.040-0.0400.0000.0000.0000.000
95A117VAL0-0.017-0.02118.165-0.022-0.0220.0000.0000.0000.000
96A118THR0-0.004-0.00321.5390.0210.0210.0000.0000.0000.000
97A119VAL00.0030.01824.469-0.007-0.0070.0000.0000.0000.000
98A120ARG10.8080.88525.6410.3620.3620.0000.0000.0000.000
99A121LEU00.0370.04130.032-0.006-0.0060.0000.0000.0000.000
100A122ARG10.7600.86833.4550.1920.1920.0000.0000.0000.000
101A123VAL00.0610.03135.4760.0010.0010.0000.0000.0000.000
102A124LEU0-0.020-0.01138.5740.0020.0020.0000.0000.0000.000
103A125ALA00.0230.02339.7420.0020.0020.0000.0000.0000.000
104A126TYR00.0290.00541.7390.0020.0020.0000.0000.0000.000
105A127ASN00.0700.01845.2920.0000.0000.0000.0000.0000.000
106A128PRO0-0.010-0.01646.3120.0020.0020.0000.0000.0000.000
107A129ASP-1-0.777-0.83549.278-0.069-0.0690.0000.0000.0000.000
108A130ARG10.8020.90350.9190.0650.0650.0000.0000.0000.000
109A131ILE0-0.035-0.01549.3770.0010.0010.0000.0000.0000.000
110A132LYS10.8370.92451.6710.0750.0750.0000.0000.0000.000
111A133ALA00.0060.00549.224-0.002-0.0020.0000.0000.0000.000
112A134GLU-1-0.865-0.95150.496-0.092-0.0920.0000.0000.0000.000
113A135GLU-1-0.841-0.90253.246-0.075-0.0750.0000.0000.0000.000
114A136LEU0-0.047-0.00646.9480.0000.0000.0000.0000.0000.000
115A137PRO00.0040.01548.444-0.002-0.0020.0000.0000.0000.000
116A138GLU-1-0.747-0.86548.126-0.121-0.1210.0000.0000.0000.000
117A139SER0-0.068-0.05046.138-0.006-0.0060.0000.0000.0000.000
118A140LEU00.0410.00940.8430.0060.0060.0000.0000.0000.000
119A141LEU0-0.025-0.02044.9780.0050.0050.0000.0000.0000.000
120A142ASP-1-0.807-0.89847.564-0.099-0.0990.0000.0000.0000.000
121A143LEU0-0.0310.00144.9710.0050.0050.0000.0000.0000.000
122A144PRO0-0.001-0.01447.7410.0050.0050.0000.0000.0000.000
123A145ARG10.7500.86150.2000.0940.0940.0000.0000.0000.000
124A146PHE00.0990.04550.4510.0030.0030.0000.0000.0000.000
125A147ALA00.004-0.00649.9850.0030.0030.0000.0000.0000.000
126A148ARG10.9150.96152.1160.0850.0850.0000.0000.0000.000
127A149GLU-1-0.858-0.91755.442-0.078-0.0780.0000.0000.0000.000
128A150LYS10.8250.90153.4520.0760.0760.0000.0000.0000.000
129A151GLY00.0170.01456.1050.0020.0020.0000.0000.0000.000
130A152LEU0-0.061-0.03850.3650.0010.0010.0000.0000.0000.000
131A153VAL00.0280.00951.459-0.003-0.0030.0000.0000.0000.000
132A154GLY00.0080.01350.6120.0030.0030.0000.0000.0000.000
133A155ARG10.7540.84849.5010.0660.0660.0000.0000.0000.000
134A156VAL00.0420.02945.399-0.003-0.0030.0000.0000.0000.000
135A157GLY00.0050.00842.9400.0030.0030.0000.0000.0000.000
136A158TRP00.000-0.02939.766-0.009-0.0090.0000.0000.0000.000
137A159THR00.0110.00034.7630.0040.0040.0000.0000.0000.000
138A160PRO00.0260.02135.409-0.012-0.0120.0000.0000.0000.000
139A161THR00.0570.02432.862-0.009-0.0090.0000.0000.0000.000
140A162TYR0-0.0130.00827.139-0.011-0.0110.0000.0000.0000.000
141A163SER00.0560.02327.5540.0000.0000.0000.0000.0000.000
142A164SER00.0210.01429.0620.0020.0020.0000.0000.0000.000
143A165PHE0-0.0260.00231.0960.0040.0040.0000.0000.0000.000
144A166GLN0-0.013-0.02131.317-0.007-0.0070.0000.0000.0000.000
145A167ASP-1-0.828-0.93029.135-0.280-0.2800.0000.0000.0000.000
146A168MET0-0.0020.02632.3300.0000.0000.0000.0000.0000.000
147A169VAL00.0140.00935.6480.0050.0050.0000.0000.0000.000
148A170ALA0-0.010-0.00733.8750.0060.0060.0000.0000.0000.000
149A171GLY00.0390.01035.659-0.001-0.0010.0000.0000.0000.000
150A172MET0-0.023-0.01336.8860.0050.0050.0000.0000.0000.000
151A173ILE0-0.046-0.01538.3020.0060.0060.0000.0000.0000.000
152A174ALA0-0.041-0.02537.2470.0030.0030.0000.0000.0000.000
153A175LEU0-0.031-0.00239.3860.0000.0000.0000.0000.0000.000
154A176TYR0-0.012-0.02041.8730.0030.0030.0000.0000.0000.000
155A177GLY00.0530.04443.3470.0080.0080.0000.0000.0000.000
156A178GLU-1-0.773-0.86641.896-0.140-0.1400.0000.0000.0000.000
157A179GLU-1-0.766-0.85344.016-0.107-0.1070.0000.0000.0000.000
158A180LYS10.8450.90646.7220.1110.1110.0000.0000.0000.000
159A181THR0-0.003-0.00641.109-0.001-0.0010.0000.0000.0000.000
160A182ARG10.7670.83144.5550.1090.1090.0000.0000.0000.000
161A183GLU-1-0.827-0.88946.360-0.098-0.0980.0000.0000.0000.000
162A184TRP00.0210.00241.4010.0020.0020.0000.0000.0000.000
163A185LEU00.008-0.00641.1400.0020.0020.0000.0000.0000.000
164A186LEU0-0.010-0.00645.2590.0040.0040.0000.0000.0000.000
165A187ALA0-0.019-0.00548.6690.0050.0050.0000.0000.0000.000
166A188MET00.0050.00343.8150.0030.0030.0000.0000.0000.000
167A189LYS10.8380.90845.4400.0900.0900.0000.0000.0000.000
168A190ALA0-0.026-0.00948.1050.0040.0040.0000.0000.0000.000
169A191LEU0-0.043-0.01048.0620.0030.0030.0000.0000.0000.000
170A192ALA00.0030.00949.5910.0020.0020.0000.0000.0000.000
171A193PRO0-0.0360.00344.9170.0020.0020.0000.0000.0000.000
172A194LYS10.8750.93444.1500.0680.0680.0000.0000.0000.000
173A195ALA0-0.025-0.01640.162-0.007-0.0070.0000.0000.0000.000
174A196TYR0-0.019-0.03737.9690.0030.0030.0000.0000.0000.000
175A197PRO00.0090.00034.443-0.009-0.0090.0000.0000.0000.000
176A198SER0-0.009-0.01632.048-0.010-0.0100.0000.0000.0000.000
177A199ASN00.0550.03831.6570.0080.0080.0000.0000.0000.000
178A200PRO00.0230.00131.7920.0050.0050.0000.0000.0000.000
179A201ALA00.0170.02534.9740.0070.0070.0000.0000.0000.000
180A202MET0-0.0050.03537.4230.0050.0050.0000.0000.0000.000
181A203LEU0-0.030-0.01836.1750.0030.0030.0000.0000.0000.000
182A204ASP-1-0.816-0.88039.020-0.066-0.0660.0000.0000.0000.000
183A205ALA00.0380.02940.7530.0060.0060.0000.0000.0000.000
184A206ILE0-0.028-0.01241.5030.0030.0030.0000.0000.0000.000
185A207ARG10.8000.88042.0900.0690.0690.0000.0000.0000.000
186A208ALA0-0.058-0.02744.6900.0040.0040.0000.0000.0000.000
187A209GLY00.0190.02346.7730.0040.0040.0000.0000.0000.000
188A210GLU-1-0.845-0.90545.083-0.064-0.0640.0000.0000.0000.000
189A211VAL0-0.039-0.01344.1150.0010.0010.0000.0000.0000.000
190A212ASP-1-0.759-0.86147.333-0.070-0.0700.0000.0000.0000.000
191A213LEU00.0050.00245.096-0.003-0.0030.0000.0000.0000.000
192A214GLY00.0660.02542.1170.0040.0040.0000.0000.0000.000
193A215SER0-0.0350.00138.954-0.007-0.0070.0000.0000.0000.000
194A216THR0-0.006-0.03135.060-0.002-0.0020.0000.0000.0000.000
195A217ASN00.0300.00229.4530.0050.0050.0000.0000.0000.000
196A218HIS00.0940.02930.1370.0080.0080.0000.0000.0000.000
197A219TYR00.0110.01027.8210.0060.0060.0000.0000.0000.000
198A220TYR0-0.040-0.02629.1080.0070.0070.0000.0000.0000.000
199A221VAL00.0630.02333.2050.0120.0120.0000.0000.0000.000
200A222VAL0-0.0160.00632.9490.0090.0090.0000.0000.0000.000
201A223ARG10.8390.91226.1270.2230.2230.0000.0000.0000.000
202A224PHE00.0320.00633.7440.0090.0090.0000.0000.0000.000
203A225ARG10.8400.91937.2020.1370.1370.0000.0000.0000.000
204A226ARG10.7370.84729.9150.1920.1920.0000.0000.0000.000
205A227ALA0-0.031-0.00236.1370.0060.0060.0000.0000.0000.000
206A228GLY00.0250.02137.6770.0080.0080.0000.0000.0000.000
207A229TYR0-0.050-0.03239.3280.0050.0050.0000.0000.0000.000
208A230ARG10.8250.85942.0450.0670.0670.0000.0000.0000.000
209A231LEU0-0.0010.01339.4330.0030.0030.0000.0000.0000.000
210A232GLY00.0490.02742.747-0.005-0.0050.0000.0000.0000.000
211A233MET0-0.068-0.04937.434-0.007-0.0070.0000.0000.0000.000
212A234HIS0-0.0120.00141.900-0.002-0.0020.0000.0000.0000.000
213A235HIS00.011-0.00738.080-0.012-0.0120.0000.0000.0000.000
214A236PHE00.0060.01141.4670.0070.0070.0000.0000.0000.000
215A237ARG10.8810.92043.8650.1160.1160.0000.0000.0000.000
216A238ASP-1-0.844-0.93942.999-0.171-0.1710.0000.0000.0000.000
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