FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37478

Number of unique PDB entries: 7783

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FMODB ID: G6G51

Calculation Name: 4QLO-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4QLO

Chain ID: A

ChEMBL ID:

UniProt ID:

Base Structure: X-ray

Registration Date: 2023-09-19

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 327
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -5301787.453809
FMO2-HF: Nuclear repulsion 5172002.107013
FMO2-HF: Total energy -129785.346795
FMO2-MP2: Total energy -130171.487869


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:3:ASN)


Summations of interaction energy for fragment #1(A:3:ASN)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-14.219-12.8713.631-6.204-8.776-0.042
Interaction energy analysis for fragmet #1(A:3:ASN)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.061 / q_NPA : -0.050
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A5THR0-0.017-0.0063.723-0.4241.745-0.035-0.939-1.195-0.001
4A6VAL00.0150.0135.838-0.058-0.0580.0000.0000.0000.000
5A7ASP-1-0.877-0.9359.562-0.306-0.3060.0000.0000.0000.000
6A8THR0-0.093-0.05311.784-0.082-0.0820.0000.0000.0000.000
7A9LEU0-0.0060.02413.2660.0880.0880.0000.0000.0000.000
8A10ASN0-0.021-0.02216.1980.0400.0400.0000.0000.0000.000
9A11LEU0-0.007-0.00717.6550.0030.0030.0000.0000.0000.000
10A12GLY00.0070.01621.4410.0100.0100.0000.0000.0000.000
11A13GLU-1-0.870-0.93025.126-0.251-0.2510.0000.0000.0000.000
12A14PHE0-0.054-0.02926.123-0.032-0.0320.0000.0000.0000.000
13A15ILE00.0100.01028.1550.0170.0170.0000.0000.0000.000
14A16THR0-0.0170.00030.273-0.014-0.0140.0000.0000.0000.000
15A17GLU-1-0.779-0.91631.961-0.276-0.2760.0000.0000.0000.000
16A18SER0-0.136-0.05734.5300.0110.0110.0000.0000.0000.000
17A19GLY00.0020.00735.8210.0140.0140.0000.0000.0000.000
18A20GLU-1-0.833-0.91134.369-0.201-0.2010.0000.0000.0000.000
19A21VAL00.0310.00331.730-0.017-0.0170.0000.0000.0000.000
20A22ILE0-0.040-0.00126.6130.0020.0020.0000.0000.0000.000
21A23ASP-1-0.867-0.93828.638-0.213-0.2130.0000.0000.0000.000
22A24ASN0-0.050-0.04824.409-0.012-0.0120.0000.0000.0000.000
23A25LEU0-0.0150.00521.812-0.004-0.0040.0000.0000.0000.000
24A26ARG10.9370.96820.0810.3000.3000.0000.0000.0000.000
25A27LEU00.0050.01017.0980.0140.0140.0000.0000.0000.000
26A28ARG10.9400.98413.7640.5930.5930.0000.0000.0000.000
27A29TYR00.009-0.0128.7550.1080.1080.0000.0000.0000.000
28A30GLU-1-0.718-0.8478.419-1.794-1.7940.0000.0000.0000.000
29A31HIS0-0.008-0.0043.7131.2911.6400.000-0.034-0.3150.000
30A32VAL00.0320.0073.990-1.005-0.753-0.001-0.089-0.1620.000
31A33GLY00.0200.0372.5263.0224.1670.106-0.440-0.811-0.001
32A34TYR0-0.057-0.0331.844-16.050-18.78813.559-4.682-6.139-0.040
33A35HIS00.0470.0083.9391.5551.7270.002-0.020-0.1540.000
34A36GLY00.0190.0066.2660.3570.3570.0000.0000.0000.000
35A37GLN0-0.0210.0186.202-0.877-0.8770.0000.0000.0000.000
36A38PRO00.006-0.0069.5710.0040.0040.0000.0000.0000.000
37A39LEU00.0260.02910.342-0.238-0.2380.0000.0000.0000.000
38A40VAL0-0.013-0.01611.5100.4040.4040.0000.0000.0000.000
39A41VAL00.0110.01112.466-0.259-0.2590.0000.0000.0000.000
40A42VAL00.0150.00313.8940.1930.1930.0000.0000.0000.000
41A43CYS0-0.051-0.00116.412-0.010-0.0100.0000.0000.0000.000
42A44HIS0-0.0020.00918.5440.0460.0460.0000.0000.0000.000
43A45ALA00.020-0.01020.3240.0430.0430.0000.0000.0000.000
44A46LEU0-0.002-0.00423.770-0.010-0.0100.0000.0000.0000.000
45A47THR0-0.005-0.01825.0760.0170.0170.0000.0000.0000.000
46A48GLY0-0.0070.00821.4370.0210.0210.0000.0000.0000.000
47A49ASN00.0310.03017.598-0.041-0.0410.0000.0000.0000.000
48A50HIS00.048-0.00312.6380.0090.0090.0000.0000.0000.000
49A51LEU0-0.0280.00612.628-0.233-0.2330.0000.0000.0000.000
50A52THR00.0020.00212.1960.2030.2030.0000.0000.0000.000
51A53TYR0-0.016-0.0127.3670.2230.2230.0000.0000.0000.000
52A54GLY0-0.001-0.01310.7740.2870.2870.0000.0000.0000.000
53A55THR0-0.065-0.0259.516-0.045-0.0450.0000.0000.0000.000
54A56ASP-1-0.919-0.9639.8620.5760.5760.0000.0000.0000.000
55A57ASP-1-0.870-0.95112.4320.2160.2160.0000.0000.0000.000
56A58TYR0-0.111-0.06914.008-0.040-0.0400.0000.0000.0000.000
57A59PRO0-0.0040.02913.914-0.108-0.1080.0000.0000.0000.000
58A60GLY00.0500.01913.691-0.009-0.0090.0000.0000.0000.000
59A61TRP0-0.063-0.05014.7280.1080.1080.0000.0000.0000.000
60A62TRP00.007-0.02414.2980.0710.0710.0000.0000.0000.000
61A63ARG10.8760.9629.9500.1600.1600.0000.0000.0000.000
62A64GLU-1-0.901-0.94914.051-0.273-0.2730.0000.0000.0000.000
63A65ILE0-0.047-0.01816.6020.0250.0250.0000.0000.0000.000
64A66ILE0-0.047-0.02910.199-0.013-0.0130.0000.0000.0000.000
65A67ASP-1-0.838-0.92112.446-0.288-0.2880.0000.0000.0000.000
66A68GLY0-0.070-0.03214.2050.0640.0640.0000.0000.0000.000
67A69GLY0-0.025-0.00815.1300.0300.0300.0000.0000.0000.000
68A70TYR0-0.062-0.03616.1820.0000.0000.0000.0000.0000.000
69A71ILE00.007-0.01312.9630.0040.0040.0000.0000.0000.000
70A72PRO00.0140.02312.607-0.096-0.0960.0000.0000.0000.000
71A73ILE00.0680.0015.778-0.163-0.1630.0000.0000.0000.000
72A74HIS0-0.029-0.0137.816-0.527-0.5270.0000.0000.0000.000
73A75ASP-1-0.940-0.9569.573-0.987-0.9870.0000.0000.0000.000
74A76TYR0-0.086-0.0519.7000.1160.1160.0000.0000.0000.000
75A77GLN00.0040.0235.873-0.965-0.9650.0000.0000.0000.000
76A78PHE00.007-0.0127.3491.0411.0410.0000.0000.0000.000
77A79LEU0-0.009-0.0038.528-0.661-0.6610.0000.0000.0000.000
78A80THR0-0.035-0.00910.9800.2900.2900.0000.0000.0000.000
79A81PHE00.0160.00413.227-0.080-0.0800.0000.0000.0000.000
80A82ASP-1-0.785-0.88715.817-0.555-0.5550.0000.0000.0000.000
81A83VAL0-0.0300.03518.2900.0300.0300.0000.0000.0000.000
82A84ILE00.0480.01621.5170.0270.0270.0000.0000.0000.000
83A85GLY0-0.004-0.01823.7450.0130.0130.0000.0000.0000.000
84A86SER0-0.061-0.04021.6240.0550.0550.0000.0000.0000.000
85A87PRO00.003-0.00923.8390.0000.0000.0000.0000.0000.000
86A88PHE0-0.034-0.01819.3780.0290.0290.0000.0000.0000.000
87A89GLY00.020-0.00618.633-0.059-0.0590.0000.0000.0000.000
88A90SER0-0.029-0.05419.274-0.004-0.0040.0000.0000.0000.000
89A91SER0-0.019-0.00320.5660.0500.0500.0000.0000.0000.000
90A92SER00.0630.02024.032-0.008-0.0080.0000.0000.0000.000
91A93PRO00.0050.00126.6090.0160.0160.0000.0000.0000.000
92A94LEU0-0.0030.02425.1610.0200.0200.0000.0000.0000.000
93A95ASN0-0.091-0.04122.5530.0380.0380.0000.0000.0000.000
94A96ASP-1-0.914-0.97826.834-0.233-0.2330.0000.0000.0000.000
95A97PRO0-0.019-0.00929.0580.0000.0000.0000.0000.0000.000
96A98HIS0-0.058-0.03031.9560.0110.0110.0000.0000.0000.000
97A99PHE0-0.0110.00826.661-0.016-0.0160.0000.0000.0000.000
98A100PRO0-0.0030.00030.3070.0140.0140.0000.0000.0000.000
99A101LYS10.8950.93433.3800.1750.1750.0000.0000.0000.000
100A102LYS10.8720.93835.6530.1930.1930.0000.0000.0000.000
101A103LEU00.0280.04227.749-0.003-0.0030.0000.0000.0000.000
102A104THR0-0.026-0.02531.3590.0030.0030.0000.0000.0000.000
103A105LEU0-0.007-0.02026.842-0.020-0.0200.0000.0000.0000.000
104A106ARG10.8080.89527.6970.2790.2790.0000.0000.0000.000
105A107ASP-1-0.720-0.86028.035-0.348-0.3480.0000.0000.0000.000
106A108ILE0-0.018-0.01023.331-0.030-0.0300.0000.0000.0000.000
107A109VAL0-0.015-0.00523.347-0.051-0.0510.0000.0000.0000.000
108A110ARG10.9831.00023.1810.3550.3550.0000.0000.0000.000
109A111ALA0-0.024-0.01522.537-0.010-0.0100.0000.0000.0000.000
110A112ASN00.0490.01119.135-0.045-0.0450.0000.0000.0000.000
111A113GLU-1-0.879-0.91218.652-0.639-0.6390.0000.0000.0000.000
112A114ARG10.8490.90919.7190.4100.4100.0000.0000.0000.000
113A115GLY00.0320.01217.2280.0040.0040.0000.0000.0000.000
114A116ILE0-0.067-0.04014.979-0.130-0.1300.0000.0000.0000.000
115A117GLN00.0300.00015.298-0.053-0.0530.0000.0000.0000.000
116A118ALA0-0.071-0.01316.0150.0290.0290.0000.0000.0000.000
117A119LEU0-0.037-0.00810.1650.0120.0120.0000.0000.0000.000
118A120GLY00.0390.03112.9390.0100.0100.0000.0000.0000.000
119A121TYR0-0.115-0.0557.8240.1780.1780.0000.0000.0000.000
120A122ASP-1-0.850-0.93314.588-0.608-0.6080.0000.0000.0000.000
121A123LYS10.8320.91516.4440.7550.7550.0000.0000.0000.000
122A124ILE00.0320.02315.585-0.164-0.1640.0000.0000.0000.000
123A125ASN0-0.016-0.00615.3190.1240.1240.0000.0000.0000.000
124A126ILE00.001-0.00515.5760.1550.1550.0000.0000.0000.000
125A127LEU00.0320.03316.635-0.130-0.1300.0000.0000.0000.000
126A128ILE0-0.013-0.01017.1370.1100.1100.0000.0000.0000.000
127A129GLY00.0510.02519.350-0.065-0.0650.0000.0000.0000.000
128A130GLY00.0550.04721.7950.0520.0520.0000.0000.0000.000
129A131SER00.0100.00323.835-0.026-0.0260.0000.0000.0000.000
130A132LEU00.0350.00225.1300.0070.0070.0000.0000.0000.000
131A133GLY00.0670.03622.868-0.016-0.0160.0000.0000.0000.000
132A134GLY00.003-0.00323.492-0.027-0.0270.0000.0000.0000.000
133A135MET0-0.054-0.02625.7020.0100.0100.0000.0000.0000.000
134A136GLN00.0290.00321.435-0.035-0.0350.0000.0000.0000.000
135A137ALA00.0100.01123.063-0.005-0.0050.0000.0000.0000.000
136A138MET0-0.045-0.01024.1100.0160.0160.0000.0000.0000.000
137A139GLU-1-0.778-0.87827.228-0.358-0.3580.0000.0000.0000.000
138A140LEU00.0320.02720.2850.0110.0110.0000.0000.0000.000
139A141LEU0-0.048-0.04124.0920.0050.0050.0000.0000.0000.000
140A142TYR0-0.096-0.08026.1760.0240.0240.0000.0000.0000.000
141A143ASN0-0.049-0.05226.2870.0510.0510.0000.0000.0000.000
142A144GLN0-0.045-0.01525.9560.0130.0130.0000.0000.0000.000
143A145GLN00.0070.01623.1940.0410.0410.0000.0000.0000.000
144A146PHE0-0.023-0.00918.268-0.031-0.0310.0000.0000.0000.000
145A147GLU-1-0.912-0.94021.348-0.547-0.5470.0000.0000.0000.000
146A148VAL00.023-0.00920.326-0.082-0.0820.0000.0000.0000.000
147A149ASP-1-0.934-0.95420.240-0.567-0.5670.0000.0000.0000.000
148A150LYS10.8260.91418.4490.9110.9110.0000.0000.0000.000
149A151ALA00.0470.02420.898-0.071-0.0710.0000.0000.0000.000
150A152ILE0-0.027-0.00921.0240.0620.0620.0000.0000.0000.000
151A153ILE00.0280.00823.113-0.035-0.0350.0000.0000.0000.000
152A154LEU0-0.017-0.01422.9160.0420.0420.0000.0000.0000.000
153A155ALA0-0.014-0.00226.827-0.006-0.0060.0000.0000.0000.000
154A156ALA00.0380.00328.965-0.006-0.0060.0000.0000.0000.000
155A157THR00.0270.01730.7890.0000.0000.0000.0000.0000.000
156A158SER00.0560.00833.030-0.010-0.0100.0000.0000.0000.000
157A159ARG10.8510.93735.2430.2380.2380.0000.0000.0000.000
158A160THR00.0280.00435.021-0.001-0.0010.0000.0000.0000.000
159A161SER00.0170.01536.9270.0120.0120.0000.0000.0000.000
160A162SER00.012-0.01839.917-0.003-0.0030.0000.0000.0000.000
161A163TYR00.0690.03839.1310.0030.0030.0000.0000.0000.000
162A164SER00.0370.01136.466-0.003-0.0030.0000.0000.0000.000
163A165ARG10.9680.99638.5230.1980.1980.0000.0000.0000.000
164A166ALA0-0.0170.00640.4220.0040.0040.0000.0000.0000.000
165A167PHE0-0.0020.00735.4290.0060.0060.0000.0000.0000.000
166A168ASN00.013-0.02435.4980.0050.0050.0000.0000.0000.000
167A169GLU-1-0.933-0.96738.417-0.161-0.1610.0000.0000.0000.000
168A170ILE0-0.022-0.00941.7550.0070.0070.0000.0000.0000.000
169A171ALA00.006-0.00737.5940.0060.0060.0000.0000.0000.000
170A172ARG10.8370.92137.1980.2090.2090.0000.0000.0000.000
171A173GLN0-0.041-0.02940.0580.0110.0110.0000.0000.0000.000
172A174ALA00.0110.00941.1130.0080.0080.0000.0000.0000.000
173A175ILE0-0.019-0.00336.1950.0050.0050.0000.0000.0000.000
174A176HIS0-0.044-0.00740.4290.0020.0020.0000.0000.0000.000
175A177LEU0-0.028-0.02343.1150.0060.0060.0000.0000.0000.000
176A178GLY00.0100.01543.3760.0070.0070.0000.0000.0000.000
177A179GLY00.0020.00039.9660.0030.0030.0000.0000.0000.000
178A180LYS10.9480.95034.9820.1150.1150.0000.0000.0000.000
179A181GLU-1-0.871-0.94337.790-0.116-0.1160.0000.0000.0000.000
180A182GLY00.0290.01540.191-0.001-0.0010.0000.0000.0000.000
181A183LEU0-0.002-0.00532.896-0.008-0.0080.0000.0000.0000.000
182A184SER00.0040.00635.760-0.013-0.0130.0000.0000.0000.000
183A185ILE00.0260.03337.329-0.005-0.0050.0000.0000.0000.000
184A186ALA00.0250.00435.866-0.004-0.0040.0000.0000.0000.000
185A187ARG10.9060.96928.1550.2440.2440.0000.0000.0000.000
186A188GLN0-0.043-0.04334.800-0.003-0.0030.0000.0000.0000.000
187A189LEU00.003-0.00837.5640.0040.0040.0000.0000.0000.000
188A190GLY00.0270.02134.7950.0000.0000.0000.0000.0000.000
189A191PHE0-0.023-0.00335.844-0.004-0.0040.0000.0000.0000.000
190A192LEU0-0.028-0.01037.4920.0060.0060.0000.0000.0000.000
191A193THR0-0.061-0.03736.2120.0000.0000.0000.0000.0000.000
192A194TYR0-0.0090.00334.940-0.008-0.0080.0000.0000.0000.000
193A195ARG10.9410.98338.1980.1440.1440.0000.0000.0000.000
194A196SER00.0380.02837.514-0.009-0.0090.0000.0000.0000.000
195A197SER00.0480.01637.7140.0130.0130.0000.0000.0000.000
196A198LYS10.8200.89738.7300.1020.1020.0000.0000.0000.000
197A199SER00.0540.03536.3510.0080.0080.0000.0000.0000.000
198A200TYR0-0.027-0.03238.1970.0050.0050.0000.0000.0000.000
199A201ASP-1-0.896-0.93741.124-0.086-0.0860.0000.0000.0000.000
200A202GLU-1-0.933-0.95735.658-0.112-0.1120.0000.0000.0000.000
201A203ARG10.8820.94735.0510.1230.1230.0000.0000.0000.000
202A204PHE00.0660.02740.132-0.002-0.0020.0000.0000.0000.000
203A205THR0-0.176-0.17341.735-0.003-0.0030.0000.0000.0000.000
204A206PRO0-0.0130.02543.145-0.005-0.0050.0000.0000.0000.000
205A207ASP-1-0.876-0.93444.898-0.069-0.0690.0000.0000.0000.000
206A208GLU-1-0.724-0.84041.415-0.071-0.0710.0000.0000.0000.000
207A209VAL0-0.083-0.01638.911-0.006-0.0060.0000.0000.0000.000
208A210VAL0-0.003-0.00239.547-0.007-0.0070.0000.0000.0000.000
209A211ALA00.0570.02740.990-0.004-0.0040.0000.0000.0000.000
210A212TYR00.0060.00431.117-0.003-0.0030.0000.0000.0000.000
211A213GLN0-0.011-0.02236.122-0.015-0.0150.0000.0000.0000.000
212A214GLN0-0.010-0.00236.874-0.010-0.0100.0000.0000.0000.000
213A215HIS0-0.0200.00333.387-0.005-0.0050.0000.0000.0000.000
214A216GLN00.017-0.01430.5360.0100.0100.0000.0000.0000.000
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