FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-07-23

All entries: 44592

Number of unique PDB entries: 7794

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FMODB ID: G8631

Calculation Name: 2HZE-A-Xray540

Preferred Name:

Target Type:

Ligand Name: s-(dimethylarsenic)cysteine

Ligand 3-letter code: CAS

Ligand of Interest (LOI):

PDB ID: 2HZE

Chain ID: A

ChEMBL ID:

UniProt ID: Q8JLF5

Base Structure: X-ray

Registration Date: 2025-07-14

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 209
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -898387.794004
FMO2-HF: Nuclear repulsion 854123.844213
FMO2-HF: Total energy -44263.949791
FMO2-MP2: Total energy -44392.480467


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:-2:HIS)


Summations of interaction energy for fragment #1(A:-2:HIS)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-0.2442.302-0.023-1.402-1.122-0.001
Interaction energy analysis for fragmet #1(A:-2:HIS)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.111 / q_NPA : 0.029
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4A-1HIS0-0.1470.0533.803-1.384-0.8520.002-0.271-0.2640.000
5A0GLN00.258-0.0383.8070.1192.133-0.025-1.131-0.858-0.001
6A0GLN0-0.1660.1147.251-0.079-0.0790.0000.0000.0000.000
7A1MET00.067-0.1497.082-0.697-0.6970.0000.0000.0000.000
8A1MET0-0.1000.1276.414-0.242-0.2420.0000.0000.0000.000
9A2ALA00.136-0.1129.4270.1010.1010.0000.0000.0000.000
10A2ALA0-0.0560.13313.237-0.031-0.0310.0000.0000.0000.000
11A3GLU00.047-0.13712.810-0.014-0.0140.0000.0000.0000.000
12A3GLU-1-0.975-0.85113.5710.4970.4970.0000.0000.0000.000
13A4GLU00.032-0.14511.874-0.162-0.1620.0000.0000.0000.000
14A4GLU-1-0.920-0.7919.0202.1632.1630.0000.0000.0000.000
15A5PHE00.115-0.09612.6370.0130.0130.0000.0000.0000.000
16A5PHE0-0.1320.06912.191-0.024-0.0240.0000.0000.0000.000
17A6VAL00.027-0.11813.759-0.037-0.0370.0000.0000.0000.000
18A6VAL0-0.0930.10616.544-0.013-0.0130.0000.0000.0000.000
19A7GLN00.106-0.10316.785-0.044-0.0440.0000.0000.0000.000
20A7GLN0-0.0600.10816.8520.0040.0040.0000.0000.0000.000
21A8GLN00.047-0.12916.035-0.061-0.0610.0000.0000.0000.000
22A8GLN0-0.0830.11012.6630.1450.1450.0000.0000.0000.000
23A9ARG00.053-0.15017.316-0.002-0.0020.0000.0000.0000.000
24A9ARG10.7971.09514.146-0.556-0.5560.0000.0000.0000.000
25A10LEU00.097-0.11519.903-0.052-0.0520.0000.0000.0000.000
26A10LEU0-0.1260.14220.953-0.005-0.0050.0000.0000.0000.000
27A11ALA00.086-0.12822.6610.0350.0350.0000.0000.0000.000
28A11ALA0-0.0650.11724.739-0.001-0.0010.0000.0000.0000.000
29A12ASN00.136-0.08825.448-0.016-0.0160.0000.0000.0000.000
30A12ASN0-0.1480.08728.1720.0040.0040.0000.0000.0000.000
31A13ASN00.066-0.06128.828-0.013-0.0130.0000.0000.0000.000
32A13ASN0-0.1580.03931.4300.0090.0090.0000.0000.0000.000
33A14LYS00.193-0.11127.714-0.007-0.0070.0000.0000.0000.000
34A14LYS10.6720.99322.835-0.317-0.3170.0000.0000.0000.000
35A15VAL00.027-0.08328.8810.0040.0040.0000.0000.0000.000
36A15VAL0-0.0570.09629.119-0.003-0.0030.0000.0000.0000.000
37A16THR0-0.006-0.09024.4520.0010.0010.0000.0000.0000.000
38A16THR0-0.0150.07122.288-0.001-0.0010.0000.0000.0000.000
39A17ILE00.105-0.07725.320-0.005-0.0050.0000.0000.0000.000
40A17ILE0-0.0950.10226.384-0.004-0.0040.0000.0000.0000.000
41A18PHE00.090-0.07921.8500.0120.0120.0000.0000.0000.000
42A18PHE0-0.1000.08818.427-0.007-0.0070.0000.0000.0000.000
43A19VAL00.069-0.13722.498-0.023-0.0230.0000.0000.0000.000
44A19VAL0-0.0190.11223.728-0.004-0.0040.0000.0000.0000.000
45A20LYS00.114-0.09321.9060.0080.0080.0000.0000.0000.000
46A20LYS10.8241.04320.6340.1000.1000.0000.0000.0000.000
47A21TYR00.111-0.09423.582-0.002-0.0020.0000.0000.0000.000
48A21TYR0-0.0480.13123.452-0.001-0.0010.0000.0000.0000.000
49A22THR00.029-0.07125.7030.0050.0050.0000.0000.0000.000
50A22THR0-0.0510.06125.3550.0020.0020.0000.0000.0000.000
51A23CYS00.134-0.12727.466-0.011-0.0110.0000.0000.0000.000
52A23CYS0-0.1780.14327.0030.0040.0040.0000.0000.0000.000
53A24PRO00.040-0.10828.8230.0110.0110.0000.0000.0000.000
54A25PHE00.1240.00931.7040.0060.0060.0000.0000.0000.000
55A25PHE0-0.0180.11931.1100.0000.0000.0000.0000.0000.000
56A26CYS00.127-0.08328.2530.0070.0070.0000.0000.0000.000
57A26CYS0-0.1550.09126.9270.0000.0000.0000.0000.0000.000
58A27ARG00.130-0.04129.5670.0130.0130.0000.0000.0000.000
59A27ARG10.8511.04330.277-0.001-0.0010.0000.0000.0000.000
60A28ASN00.167-0.08531.8960.0060.0060.0000.0000.0000.000
61A28ASN0-0.1340.08734.522-0.001-0.0010.0000.0000.0000.000
62A29ALA00.072-0.05131.6950.0010.0010.0000.0000.0000.000
63A29ALA0-0.0440.07130.8500.0010.0010.0000.0000.0000.000
64A30LEU00.036-0.13631.1780.0080.0080.0000.0000.0000.000
65A30LEU0-0.1000.10227.9520.0010.0010.0000.0000.0000.000
66A31ASP00.106-0.10532.0180.0100.0100.0000.0000.0000.000
67A31ASP-1-1.024-0.85335.6040.0420.0420.0000.0000.0000.000
68A32ILE00.104-0.10335.5160.0010.0010.0000.0000.0000.000
69A32ILE0-0.1080.10935.6540.0000.0000.0000.0000.0000.000
70A33LEU00.089-0.09533.124-0.001-0.0010.0000.0000.0000.000
71A33LEU0-0.1000.09130.7940.0030.0030.0000.0000.0000.000
72A34ASN00.061-0.08234.6310.0080.0080.0000.0000.0000.000
73A34ASN0-0.0920.05034.3520.0050.0050.0000.0000.0000.000
74A35LYS00.051-0.11535.536-0.001-0.0010.0000.0000.0000.000
75A35LYS10.7871.05439.253-0.058-0.0580.0000.0000.0000.000
76A36PHE00.002-0.08737.306-0.004-0.0040.0000.0000.0000.000
77A36PHE0-0.0520.08636.7010.0010.0010.0000.0000.0000.000
78A37SER00.042-0.06036.7420.0040.0040.0000.0000.0000.000
79A37SER0-0.0480.06438.456-0.002-0.0020.0000.0000.0000.000
80A38PHE00.078-0.12333.491-0.004-0.0040.0000.0000.0000.000
81A38PHE0-0.0320.14532.8380.0040.0040.0000.0000.0000.000
82A39LYS00.050-0.15034.475-0.004-0.0040.0000.0000.0000.000
83A39LYS10.8601.09533.878-0.137-0.1370.0000.0000.0000.000
84A40ARG00.137-0.08031.7330.0040.0040.0000.0000.0000.000
85A40ARG10.8611.06029.429-0.216-0.2160.0000.0000.0000.000
86A41GLY0-0.044-0.11527.6120.0050.0050.0000.0000.0000.000
87A42ALA00.1330.02227.5390.0230.0230.0000.0000.0000.000
88A42ALA0-0.0870.11431.478-0.003-0.0030.0000.0000.0000.000
89A43TYR00.099-0.10328.686-0.004-0.0040.0000.0000.0000.000
90A43TYR0-0.0970.10429.038-0.005-0.0050.0000.0000.0000.000
91A44GLU00.020-0.11724.161-0.007-0.0070.0000.0000.0000.000
92A44GLU-1-0.896-0.80620.7580.3560.3560.0000.0000.0000.000
93A45ILE00.060-0.10524.7850.0000.0000.0000.0000.0000.000
94A45ILE0-0.0930.09324.590-0.005-0.0050.0000.0000.0000.000
95A46VAL00.110-0.12220.4750.0040.0040.0000.0000.0000.000
96A46VAL0-0.0750.12418.4920.0040.0040.0000.0000.0000.000
97A47ASP00.140-0.08120.026-0.025-0.0250.0000.0000.0000.000
98A47ASP-1-0.929-0.82419.4750.0420.0420.0000.0000.0000.000
99A48ILE00.107-0.06417.3240.0340.0340.0000.0000.0000.000
100A48ILE0-0.0950.06117.735-0.006-0.0060.0000.0000.0000.000
101A49LYS00.063-0.07116.275-0.026-0.0260.0000.0000.0000.000
102A49LYS10.7610.96917.859-0.005-0.0050.0000.0000.0000.000
103A50GLU00.035-0.17214.301-0.094-0.0940.0000.0000.0000.000
104A50GLU-1-0.977-0.80613.7580.3470.3470.0000.0000.0000.000
105A51PHE00.018-0.08611.7270.0330.0330.0000.0000.0000.000
106A51PHE0-0.0850.10710.130-0.014-0.0140.0000.0000.0000.000
107A52LYS0-0.052-0.14410.550-0.014-0.0140.0000.0000.0000.000
108A52LYS10.9191.08210.0830.5320.5320.0000.0000.0000.000
109A53PRO00.064-0.0449.200-0.048-0.0480.0000.0000.0000.000
110A54GLU00.190-0.00112.1020.1070.1070.0000.0000.0000.000
111A54GLU-1-0.935-0.83116.425-0.176-0.1760.0000.0000.0000.000
112A55ASN0-0.050-0.10415.5250.0870.0870.0000.0000.0000.000
113A55ASN0-0.0020.08815.097-0.036-0.0360.0000.0000.0000.000
114A56GLU00.132-0.09612.9850.0430.0430.0000.0000.0000.000
115A56GLU-1-0.892-0.79610.268-0.588-0.5880.0000.0000.0000.000
116A57LEU00.182-0.10114.4850.0820.0820.0000.0000.0000.000
117A57LEU0-0.1500.11714.654-0.001-0.0010.0000.0000.0000.000
118A58ARG00.009-0.08515.8550.0510.0510.0000.0000.0000.000
119A58ARG10.8131.00119.0620.1190.1190.0000.0000.0000.000
120A59ASP00.173-0.10818.0610.0340.0340.0000.0000.0000.000
121A59ASP-1-1.026-0.83017.133-0.168-0.1680.0000.0000.0000.000
122A60TYR00.069-0.07216.9590.0040.0040.0000.0000.0000.000
123A60TYR0-0.0490.11116.0960.0200.0200.0000.0000.0000.000
124A61PHE00.068-0.10418.1700.0270.0270.0000.0000.0000.000
125A61PHE0-0.0620.05719.7400.0030.0030.0000.0000.0000.000
126A62GLU00.070-0.03221.1330.0200.0200.0000.0000.0000.000
127A62GLU-1-0.961-0.87222.341-0.050-0.0500.0000.0000.0000.000
128A63GLN00.035-0.09121.429-0.007-0.0070.0000.0000.0000.000
129A63GLN0-0.0480.07620.0040.0160.0160.0000.0000.0000.000
130A64ILE00.026-0.09922.075-0.005-0.0050.0000.0000.0000.000
131A64ILE0-0.1080.10520.7800.0070.0070.0000.0000.0000.000
132A65THR0-0.043-0.10723.4590.0100.0100.0000.0000.0000.000
133A65THR0-0.0440.02523.498-0.006-0.0060.0000.0000.0000.000
134A66GLY00.028-0.05625.607-0.006-0.0060.0000.0000.0000.000
135A67GLY0-0.019-0.02026.084-0.015-0.0150.0000.0000.0000.000
136A68LYS00.122-0.01822.9860.0210.0210.0000.0000.0000.000
137A68LYS10.8321.07822.0790.0930.0930.0000.0000.0000.000
138A69THR0-0.048-0.07422.6390.0000.0000.0000.0000.0000.000
139A69THR0-0.0790.05224.607-0.006-0.0060.0000.0000.0000.000
140A70VAL00.068-0.08624.2190.0130.0130.0000.0000.0000.000
141A70VAL0-0.0550.09122.374-0.002-0.0020.0000.0000.0000.000
142A71PRO0-0.014-0.13525.056-0.017-0.0170.0000.0000.0000.000
143A72ARG00.034-0.00224.260-0.016-0.0160.0000.0000.0000.000
144A72ARG10.8271.04323.000-0.056-0.0560.0000.0000.0000.000
145A73ILE00.144-0.09125.2790.0200.0200.0000.0000.0000.000
146A73ILE0-0.0930.10428.429-0.001-0.0010.0000.0000.0000.000
147A74PHE00.074-0.10426.049-0.014-0.0140.0000.0000.0000.000
148A74PHE0-0.0500.10922.7480.0060.0060.0000.0000.0000.000
149A75PHE00.072-0.10027.3900.0060.0060.0000.0000.0000.000
150A75PHE0-0.0690.11230.732-0.002-0.0020.0000.0000.0000.000
151A76GLY00.057-0.08928.660-0.006-0.0060.0000.0000.0000.000
152A77LYS00.038-0.02125.4050.0070.0070.0000.0000.0000.000
153A77LYS10.8761.07422.722-0.354-0.3540.0000.0000.0000.000
154A78THR00.037-0.10125.7400.0090.0090.0000.0000.0000.000
155A78THR0-0.0550.08229.8000.0050.0050.0000.0000.0000.000
156A79SER00.056-0.07627.1850.0010.0010.0000.0000.0000.000
157A79SER00.0270.09926.115-0.002-0.0020.0000.0000.0000.000
158A80ILE0-0.034-0.11127.943-0.006-0.0060.0000.0000.0000.000
159A80ILE0-0.0910.11030.7460.0000.0000.0000.0000.0000.000
160A81GLY00.067-0.06329.076-0.011-0.0110.0000.0000.0000.000
161A82GLY0-0.048-0.06228.8280.0070.0070.0000.0000.0000.000
162A83TYR00.0850.02930.4120.0060.0060.0000.0000.0000.000
163A83TYR0-0.0500.08432.161-0.001-0.0010.0000.0000.0000.000
164A84SER00.002-0.10832.8900.0040.0040.0000.0000.0000.000
165A84SER0-0.0370.07435.156-0.002-0.0020.0000.0000.0000.000
166A85ASP00.151-0.06334.163-0.003-0.0030.0000.0000.0000.000
167A85ASP-1-0.895-0.79132.9390.0510.0510.0000.0000.0000.000
168A86LEU00.136-0.10234.2720.0030.0030.0000.0000.0000.000
169A86LEU0-0.1420.09232.6600.0010.0010.0000.0000.0000.000
170A87LEU00.137-0.07635.4550.0040.0040.0000.0000.0000.000
171A87LEU0-0.1610.07337.650-0.001-0.0010.0000.0000.0000.000
172A88GLU00.093-0.13938.446-0.002-0.0020.0000.0000.0000.000
173A88GLU-1-1.020-0.82338.9490.0410.0410.0000.0000.0000.000
174A89ILE00.069-0.08038.664-0.003-0.0030.0000.0000.0000.000
175A89ILE0-0.1000.07436.0870.0020.0020.0000.0000.0000.000
176A90ASP00.071-0.12239.4120.0020.0020.0000.0000.0000.000
177A90ASP-1-0.938-0.83439.1070.0560.0560.0000.0000.0000.000
178A91ASN00.056-0.07640.8820.0000.0000.0000.0000.0000.000
179A91ASN0-0.1380.04442.7420.0000.0000.0000.0000.0000.000
180A92MET00.039-0.11743.452-0.003-0.0030.0000.0000.0000.000
181A92MET0-0.1720.08841.8930.0010.0010.0000.0000.0000.000
182A93ASP00.096-0.10944.5330.0010.0010.0000.0000.0000.000
183A93ASP-1-1.015-0.85845.8280.0550.0550.0000.0000.0000.000
184A94ALA00.196-0.11042.6080.0010.0010.0000.0000.0000.000
185A94ALA0-0.1090.14342.0250.0000.0000.0000.0000.0000.000
186A95LEU00.062-0.11939.1450.0060.0060.0000.0000.0000.000
187A95LEU0-0.1040.11136.1060.0010.0010.0000.0000.0000.000
188A96GLY00.028-0.11139.3690.0070.0070.0000.0000.0000.000
189A97ASP00.160-0.02541.2380.0070.0070.0000.0000.0000.000
190A97ASP-1-0.964-0.79643.0740.0710.0710.0000.0000.0000.000
191A98ILE00.035-0.11938.3230.0050.0050.0000.0000.0000.000
192A98ILE0-0.0620.10336.2960.0010.0010.0000.0000.0000.000
193A99LEU00.072-0.11636.4270.0100.0100.0000.0000.0000.000
194A99LEU0-0.0840.10134.6200.0020.0020.0000.0000.0000.000
195A100SER00.003-0.13037.4410.0100.0100.0000.0000.0000.000
196A100SER0-0.0090.09441.674-0.001-0.0010.0000.0000.0000.000
197A101SER00.034-0.07639.3210.0060.0060.0000.0000.0000.000
198A101SER0-0.0680.09438.976-0.001-0.0010.0000.0000.0000.000
199A102ILE0-0.005-0.13334.5440.0030.0030.0000.0000.0000.000
200A102ILE0-0.1130.12432.4420.0020.0020.0000.0000.0000.000
201A103GLY00.025-0.10234.2480.0140.0140.0000.0000.0000.000
202A104VAL00.042-0.05633.6330.0080.0080.0000.0000.0000.000
203A104VAL0-0.0650.14432.0070.0000.0000.0000.0000.0000.000
204A105LEU00.116-0.14034.5970.0050.0050.0000.0000.0000.000
205A105LEU0-0.0380.17536.7880.0000.0000.0000.0000.0000.000
206A106ARG0-0.006-0.13737.6190.0050.0050.0000.0000.0000.000
207A106ARG10.7921.05035.478-0.119-0.1190.0000.0000.0000.000
208A107THR0-0.051-0.13938.912-0.006-0.0060.0000.0000.0000.000
209A107THR00.0620.05342.8110.0010.0010.0000.0000.0000.000