FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: G8MJ1

Calculation Name: 2JXP-A-Other547

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 2JXP

Chain ID: A

ChEMBL ID:

UniProt ID: Q82VF2

Base Structure: SolutionNMR

Registration Date: 2025-10-04

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 155
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -1397722.428774
FMO2-HF: Nuclear repulsion 1336772.200867
FMO2-HF: Total energy -60950.227907
FMO2-MP2: Total energy -61130.317485


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:MET)


Summations of interaction energy for fragment #1(A:1:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
34.18335.913-0.014-0.711-1.0050
Interaction energy analysis for fragmet #1(A:1:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.883 / q_NPA : 0.925
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3PHE00.015-0.0013.859-1.2680.462-0.014-0.711-1.0050.000
4A4LYS10.9660.9815.36040.18240.1820.0000.0000.0000.000
5A5LEU00.0370.0249.1021.7771.7770.0000.0000.0000.000
6A6ARG10.9600.97312.06115.72315.7230.0000.0000.0000.000
7A7GLY00.0070.00215.2720.7860.7860.0000.0000.0000.000
8A8GLN0-0.048-0.01116.894-0.070-0.0700.0000.0000.0000.000
9A9VAL0-0.003-0.00219.540-0.023-0.0230.0000.0000.0000.000
10A10SER0-0.058-0.05023.0010.4430.4430.0000.0000.0000.000
11A11GLU-1-0.826-0.87620.392-14.589-14.5890.0000.0000.0000.000
12A12LEU00.0140.01320.161-0.419-0.4190.0000.0000.0000.000
13A13PRO0-0.009-0.00117.1330.1890.1890.0000.0000.0000.000
14A14PHE00.0370.01919.201-0.024-0.0240.0000.0000.0000.000
15A15GLU-1-0.884-0.95422.298-12.680-12.6800.0000.0000.0000.000
16A16ARG10.8880.96923.97411.75611.7560.0000.0000.0000.000
17A17VAL00.0460.02927.167-0.078-0.0780.0000.0000.0000.000
18A18TYR00.0170.01429.5770.2640.2640.0000.0000.0000.000
19A19ILE00.0050.01433.216-0.124-0.1240.0000.0000.0000.000
20A20THR0-0.013-0.00735.6700.2690.2690.0000.0000.0000.000
21A21ALA00.044-0.00638.795-0.100-0.1000.0000.0000.0000.000
22A22PRO0-0.0270.00441.6550.1160.1160.0000.0000.0000.000
23A23ALA00.010-0.00244.9310.1490.1490.0000.0000.0000.000
24A24GLY0-0.0100.01144.7640.0810.0810.0000.0000.0000.000
25A25LEU00.0130.00743.3680.0610.0610.0000.0000.0000.000
26A26THR00.0430.00943.176-0.181-0.1810.0000.0000.0000.000
27A27ILE00.0260.01438.335-0.117-0.1170.0000.0000.0000.000
28A28GLY00.0210.01338.699-0.263-0.2630.0000.0000.0000.000
29A29SER00.0260.00738.165-0.130-0.1300.0000.0000.0000.000
30A30ASP-1-0.981-0.98538.255-8.024-8.0240.0000.0000.0000.000
31A31LEU00.023-0.00132.583-0.262-0.2620.0000.0000.0000.000
32A32GLU-1-0.913-0.95933.658-8.764-8.7640.0000.0000.0000.000
33A33ARG10.9250.96733.6297.6797.6790.0000.0000.0000.000
34A34VAL00.0160.02531.457-0.259-0.2590.0000.0000.0000.000
35A35ILE00.0260.00928.530-0.373-0.3730.0000.0000.0000.000
36A36SER0-0.052-0.01028.778-0.534-0.5340.0000.0000.0000.000
37A37THR0-0.055-0.03729.770-0.170-0.1700.0000.0000.0000.000
38A38HIS0-0.036-0.00527.437-0.219-0.2190.0000.0000.0000.000
39A39THR0-0.025-0.04824.532-0.686-0.6860.0000.0000.0000.000
40A40ARG10.9010.93319.90415.44515.4450.0000.0000.0000.000
41A41ALA00.0080.01823.7540.2130.2130.0000.0000.0000.000
42A42LYS10.8380.91225.82911.76811.7680.0000.0000.0000.000
43A43VAL00.0340.02629.253-0.088-0.0880.0000.0000.0000.000
44A44VAL0-0.048-0.02031.1650.1420.1420.0000.0000.0000.000
45A45ASN0-0.007-0.01833.7730.1560.1560.0000.0000.0000.000
46A46LYS10.8620.91036.0658.6838.6830.0000.0000.0000.000
47A47ALA00.0630.02634.083-0.221-0.2210.0000.0000.0000.000
48A48GLU-1-0.845-0.89533.179-8.833-8.8330.0000.0000.0000.000
49A49LYS10.8540.92426.20611.37111.3710.0000.0000.0000.000
50A50SER0-0.051-0.03529.567-0.131-0.1310.0000.0000.0000.000
51A51GLU-1-0.845-0.93224.067-12.308-12.3080.0000.0000.0000.000
52A52ALA0-0.0090.00326.167-0.216-0.2160.0000.0000.0000.000
53A53ILE0-0.043-0.01328.1080.2790.2790.0000.0000.0000.000
54A54ILE0-0.0140.00129.591-0.129-0.1290.0000.0000.0000.000
55A55GLN00.0370.00933.0060.1290.1290.0000.0000.0000.000
56A56ILE0-0.015-0.00436.469-0.113-0.1130.0000.0000.0000.000
57A57VAL0-0.051-0.02739.0550.1560.1560.0000.0000.0000.000
58A58HIS00.0330.00341.7620.2010.2010.0000.0000.0000.000
59A59ALA00.015-0.00442.083-0.215-0.2150.0000.0000.0000.000
60A60ILE00.0320.03543.9490.0860.0860.0000.0000.0000.000
61A61ARG10.7630.86246.8166.3086.3080.0000.0000.0000.000
62A62GLU-1-0.893-0.94348.320-5.995-5.9950.0000.0000.0000.000
63A63LYS10.8450.91450.8915.7405.7400.0000.0000.0000.000
64A64ARG10.8530.92850.0876.3686.3680.0000.0000.0000.000
65A65ILE0-0.0010.00455.154-0.058-0.0580.0000.0000.0000.000
66A66LEU0-0.031-0.00451.382-0.060-0.0600.0000.0000.0000.000
67A67SER00.0080.00055.2890.0480.0480.0000.0000.0000.000
68A68LEU00.0320.00857.7090.0310.0310.0000.0000.0000.000
69A69SER0-0.011-0.01361.463-0.045-0.0450.0000.0000.0000.000
70A70GLU-1-0.876-0.94764.238-4.682-4.6820.0000.0000.0000.000
71A71SER0-0.049-0.02265.9830.0480.0480.0000.0000.0000.000
72A72GLY00.0090.00566.1960.0090.0090.0000.0000.0000.000
73A73ARG10.7580.86562.5555.0145.0140.0000.0000.0000.000
74A74VAL00.0320.00259.704-0.063-0.0630.0000.0000.0000.000
75A75ARG10.8280.91955.9115.6035.6030.0000.0000.0000.000
76A76GLU-1-0.818-0.90153.744-5.778-5.7780.0000.0000.0000.000
77A77PHE00.013-0.00854.4610.0620.0620.0000.0000.0000.000
78A78GLU-1-0.826-0.88649.395-6.539-6.5390.0000.0000.0000.000
79A79LEU0-0.067-0.03448.7610.0720.0720.0000.0000.0000.000
80A80VAL00.0480.02046.252-0.175-0.1750.0000.0000.0000.000
81A81TYR00.000-0.00941.2540.0060.0060.0000.0000.0000.000
82A82ARG10.8120.88041.3767.3027.3020.0000.0000.0000.000
83A83VAL0-0.0010.00638.6970.0700.0700.0000.0000.0000.000
84A84ALA00.0320.00938.805-0.087-0.0870.0000.0000.0000.000
85A85ALA0-0.0020.00335.6190.1290.1290.0000.0000.0000.000
86A86ARG10.7830.87434.3778.4278.4270.0000.0000.0000.000
87A87LEU00.0110.01427.3060.0080.0080.0000.0000.0000.000
88A88LEU0-0.058-0.03031.0410.0230.0230.0000.0000.0000.000
89A89ASP-1-0.784-0.89928.531-10.988-10.9880.0000.0000.0000.000
90A90ALA00.0020.00528.5880.3410.3410.0000.0000.0000.000
91A91HIS0-0.090-0.05030.4730.3140.3140.0000.0000.0000.000
92A92ASN0-0.031-0.02433.4180.2230.2230.0000.0000.0000.000
93A93ALA00.0730.05232.1410.2120.2120.0000.0000.0000.000
94A94GLU-1-0.831-0.91132.449-8.691-8.6910.0000.0000.0000.000
95A95LEU0-0.006-0.00528.1270.0290.0290.0000.0000.0000.000
96A96ALA00.0150.01428.636-0.161-0.1610.0000.0000.0000.000
97A97SER0-0.014-0.00430.7720.3070.3070.0000.0000.0000.000
98A98LEU0-0.0070.00630.607-0.133-0.1330.0000.0000.0000.000
99A99GLN00.0080.01532.0990.0610.0610.0000.0000.0000.000
100A100GLU-1-0.803-0.87935.112-7.723-7.7230.0000.0000.0000.000
101A101ILE0-0.004-0.00735.924-0.200-0.2000.0000.0000.0000.000
102A102ARG10.9200.96436.5038.5788.5780.0000.0000.0000.000
103A103LEU0-0.0020.00738.739-0.074-0.0740.0000.0000.0000.000
104A104THR00.0550.02842.2270.1250.1250.0000.0000.0000.000
105A105ARG10.7930.88041.6437.3187.3180.0000.0000.0000.000
106A106ILE00.0450.02447.0270.1140.1140.0000.0000.0000.000
107A107LEU0-0.0120.00150.007-0.024-0.0240.0000.0000.0000.000
108A108PRO00.0260.01952.5750.0960.0960.0000.0000.0000.000
109A109PHE0-0.008-0.01555.5270.0100.0100.0000.0000.0000.000
110A110LEU0-0.003-0.01457.5590.0700.0700.0000.0000.0000.000
111A111ASP-1-0.794-0.86761.007-5.002-5.0020.0000.0000.0000.000
112A112ALA00.0190.00364.2430.0040.0040.0000.0000.0000.000
113A113GLN0-0.0140.00359.441-0.040-0.0400.0000.0000.0000.000
114A114GLU-1-0.880-0.94559.867-5.106-5.1060.0000.0000.0000.000
115A115LEU00.0170.00357.791-0.087-0.0870.0000.0000.0000.000
116A116ALA00.0390.01655.546-0.100-0.1000.0000.0000.0000.000
117A117LYS10.7320.87155.3545.5895.5890.0000.0000.0000.000
118A118ALA00.0100.01256.437-0.053-0.0530.0000.0000.0000.000
119A119ALA00.0120.03052.312-0.102-0.1020.0000.0000.0000.000
120A120GLU-1-0.814-0.92150.715-6.084-6.0840.0000.0000.0000.000
121A121GLU-1-0.745-0.87050.175-6.274-6.2740.0000.0000.0000.000
122A122GLU-1-0.826-0.88048.851-6.613-6.6130.0000.0000.0000.000
123A123MET0-0.025-0.03147.010-0.200-0.2000.0000.0000.0000.000
124A124LEU00.005-0.00745.544-0.213-0.2130.0000.0000.0000.000
125A125TYR00.0080.01745.160-0.112-0.1120.0000.0000.0000.000
126A126LYS10.8540.89843.9576.7176.7170.0000.0000.0000.000
127A127ASP-1-0.873-0.90840.708-8.025-8.0250.0000.0000.0000.000
128A128MET0-0.0190.00340.236-0.234-0.2340.0000.0000.0000.000
129A129GLN0-0.009-0.02240.578-0.054-0.0540.0000.0000.0000.000
130A130LYS10.9310.97236.8158.0148.0140.0000.0000.0000.000
131A131ASP-1-0.815-0.90235.575-9.162-9.1620.0000.0000.0000.000
132A132ALA00.0330.01235.465-0.272-0.2720.0000.0000.0000.000
133A133VAL00.0070.00734.705-0.211-0.2110.0000.0000.0000.000
134A134GLN0-0.019-0.02431.099-0.193-0.1930.0000.0000.0000.000
135A135GLN0-0.054-0.03331.000-0.758-0.7580.0000.0000.0000.000
136A136ILE00.0280.02030.989-0.304-0.3040.0000.0000.0000.000
137A137LEU0-0.0110.00327.658-0.351-0.3510.0000.0000.0000.000
138A138ARG10.9090.96826.8779.9879.9870.0000.0000.0000.000
139A139GLN0-0.022-0.02126.349-0.343-0.3430.0000.0000.0000.000
140A140VAL00.014-0.00226.486-0.378-0.3780.0000.0000.0000.000
141A141SER0-0.040-0.04122.920-0.482-0.4820.0000.0000.0000.000
142A142ALA00.0120.00922.028-0.704-0.7040.0000.0000.0000.000
143A143PHE00.034-0.01022.246-0.419-0.4190.0000.0000.0000.000
144A144THR0-0.078-0.01918.522-0.126-0.1260.0000.0000.0000.000
145A145SER0-0.085-0.03418.090-1.353-1.3530.0000.0000.0000.000
146A146ALA00.011-0.00719.047-0.243-0.2430.0000.0000.0000.000
147A147GLY00.0140.02822.0600.4510.4510.0000.0000.0000.000
148A148LEU0-0.036-0.03424.5260.4740.4740.0000.0000.0000.000
149A149GLU-1-0.878-0.93922.441-13.185-13.1850.0000.0000.0000.000
150A150HIS0-0.087-0.04626.7090.4120.4120.0000.0000.0000.000
151A151HIS0-0.0010.00329.9890.2350.2350.0000.0000.0000.000
152A152HIS0-0.042-0.02631.8990.0490.0490.0000.0000.0000.000
153A153HIS10.8560.90534.7278.3408.3400.0000.0000.0000.000
154A154HIS00.0230.02437.2250.0370.0370.0000.0000.0000.000
155A155HIS-1-0.899-0.92840.335-7.426-7.4260.0000.0000.0000.000