FMODB ID: GQVG1
Calculation Name: 1L2Y-A-MD57-90200ps
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-13
Reference:
Modeling method
Optimization | BaseStructure_original |
---|---|
Restraint | BaseStructure_original |
Protonation | BaseStructure_original |
Complement | No |
Water | No |
Procedure | Manual calculation |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 10 |
LigandCharge | |
Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
FMO2-HF: Electronic energy | -23929.649285 |
---|---|
FMO2-HF: Nuclear repulsion | 19327.377569 |
FMO2-HF: Total energy | -4602.271716 |
FMO2-MP2: Total energy | -4615.697376 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-106.308 | -98.237 | 26.891 | -14.557 | -20.406 | -0.149 |
Interaction energy analysis for fragmet #1(:1:GLN )
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | 3 | GLN | 0 | 0.037 | 0.020 | 1.770 | -10.673 | -15.059 | 14.254 | -5.296 | -4.572 | -0.039 | |
4 | 4 | GLN | 0 | -0.008 | -0.009 | 3.434 | 3.762 | 3.865 | -0.002 | 0.136 | -0.237 | 0.000 | |
5 | 5 | GLN | 0 | 0.022 | 0.002 | 5.412 | -3.473 | -3.473 | 0.000 | 0.000 | 0.000 | 0.000 | |
6 | 6 | GLN | 0 | -0.009 | -0.005 | 2.395 | -7.754 | -5.693 | 3.804 | -2.215 | -3.651 | -0.006 | |
7 | 7 | GLN | 0 | 0.050 | 0.053 | 2.671 | -4.180 | -3.066 | 1.695 | -0.284 | -2.525 | -0.013 | |
8 | 8 | GLN | 0 | -0.020 | -0.044 | 2.550 | -31.499 | -25.946 | 3.725 | -4.111 | -5.167 | -0.049 | |
9 | 9 | GLN | 0 | -0.015 | -0.010 | 2.201 | -21.029 | -17.478 | 3.415 | -2.746 | -4.221 | -0.042 | |
10 | 10 | GLN | -1 | -0.899 | -0.941 | 4.246 | -31.462 | -31.387 | 0.000 | -0.041 | -0.033 | 0.000 |