FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-07-23

All entries: 44592

Number of unique PDB entries: 7794

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FMODB ID: J2GZ9

Calculation Name: 3FC7-A-Xray540

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

PDB ID: 3FC7

Chain ID: A

ChEMBL ID:

UniProt ID: Q5V4P0

Base Structure: X-ray

Registration Date: 2025-07-10

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 187
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -685643.774109
FMO2-HF: Nuclear repulsion 648219.319833
FMO2-HF: Total energy -37424.454276
FMO2-MP2: Total energy -37533.340637


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:142:SER)


Summations of interaction energy for fragment #1(A:142:SER)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-5.224-2.711-0.004-1.226-1.2850.001
Interaction energy analysis for fragmet #1(A:142:SER)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.077 / q_NPA : 0.064
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4A143ASP-1-0.942-0.8393.843-4.336-3.4900.008-0.347-0.508-0.002
5A144SER0-0.065-0.1033.7960.3741.896-0.010-0.818-0.6930.003
6A144SER00.0030.0755.1580.1690.215-0.001-0.002-0.0440.000
7A145PRO0-0.006-0.0854.062-1.043-0.944-0.001-0.059-0.0400.000
8A146ASP00.071-0.0025.476-0.378-0.3780.0000.0000.0000.000
9A146ASP-1-0.859-0.8046.1080.0240.0240.0000.0000.0000.000
10A147GLY0-0.021-0.0927.0200.0100.0100.0000.0000.0000.000
11A148ILE00.068-0.01210.4910.1340.1340.0000.0000.0000.000
12A148ILE0-0.0940.08910.9210.0120.0120.0000.0000.0000.000
13A149VAL00.144-0.08013.244-0.057-0.0570.0000.0000.0000.000
14A149VAL0-0.1000.10816.201-0.005-0.0050.0000.0000.0000.000
15A150HIS00.108-0.07516.8850.0370.0370.0000.0000.0000.000
16A150HIS0-0.1550.05317.375-0.017-0.0170.0000.0000.0000.000
17A151LEU00.045-0.14020.019-0.017-0.0170.0000.0000.0000.000
18A151LEU0-0.0420.14519.800-0.003-0.0030.0000.0000.0000.000
19A152THR00.077-0.03422.5680.0180.0180.0000.0000.0000.000
20A152THR0-0.0910.06227.019-0.003-0.0030.0000.0000.0000.000
21A153THR00.112-0.07225.616-0.012-0.0120.0000.0000.0000.000
22A153THR0-0.0280.08027.7670.0010.0010.0000.0000.0000.000
23A154ASN0-0.006-0.09827.3750.0030.0030.0000.0000.0000.000
24A154ASN0-0.0970.07130.4640.0050.0050.0000.0000.0000.000
25A155GLY00.078-0.09625.490-0.001-0.0010.0000.0000.0000.000
26A156THR00.0660.02825.306-0.021-0.0210.0000.0000.0000.000
27A156THR0-0.0150.07827.0680.0090.0090.0000.0000.0000.000
28A157ILE00.069-0.11322.6560.0160.0160.0000.0000.0000.000
29A157ILE0-0.1120.11020.843-0.010-0.0100.0000.0000.0000.000
30A158LEU00.108-0.09323.1040.0000.0000.0000.0000.0000.000
31A158LEU0-0.1200.09123.2500.0020.0020.0000.0000.0000.000
32A159SER00.019-0.08420.484-0.001-0.0010.0000.0000.0000.000
33A159SER0-0.0620.05619.456-0.001-0.0010.0000.0000.0000.000
34A160VAL00.092-0.13217.0830.0140.0140.0000.0000.0000.000
35A160VAL0-0.0910.14516.268-0.003-0.0030.0000.0000.0000.000
36A161ASN00.140-0.04013.2250.0300.0300.0000.0000.0000.000
37A161ASN0-0.1460.06511.258-0.152-0.1520.0000.0000.0000.000
38A162PRO00.044-0.11312.9360.0070.0070.0000.0000.0000.000
39A163SER0-0.0010.0169.6920.0500.0500.0000.0000.0000.000
40A163SER0-0.0140.0657.959-0.016-0.0160.0000.0000.0000.000
41A164MET00.193-0.04211.069-0.090-0.0900.0000.0000.0000.000
42A164MET0-0.1480.07712.984-0.025-0.0250.0000.0000.0000.000
43A165ALA00.068-0.12613.3020.0360.0360.0000.0000.0000.000
44A165ALA0-0.0870.11316.0690.0080.0080.0000.0000.0000.000
45A166GLY0-0.001-0.10413.5240.0480.0480.0000.0000.0000.000
46A167ARG00.1170.06012.1960.0270.0270.0000.0000.0000.000
47A167ARG10.7290.9739.0461.0841.0840.0000.0000.0000.000
48A168LEU0-0.057-0.13912.9520.0330.0330.0000.0000.0000.000
49A168LEU0-0.0780.08715.3020.0050.0050.0000.0000.0000.000
50A169GLY00.010-0.09115.9800.0670.0670.0000.0000.0000.000
51A170ALA00.065-0.01417.7350.0520.0520.0000.0000.0000.000
52A170ALA0-0.0650.11420.3770.0090.0090.0000.0000.0000.000
53A171ASP00.036-0.13418.535-0.077-0.0770.0000.0000.0000.000
54A171ASP-1-0.874-0.79721.203-0.366-0.3660.0000.0000.0000.000
55A172PRO00.010-0.13318.4050.0230.0230.0000.0000.0000.000
56A173ASP00.112-0.00421.0120.0190.0190.0000.0000.0000.000
57A173ASP-1-0.985-0.83124.040-0.308-0.3080.0000.0000.0000.000
58A174THR0-0.019-0.09523.9680.0310.0310.0000.0000.0000.000
59A174THR0-0.0640.05923.697-0.005-0.0050.0000.0000.0000.000
60A175LEU00.070-0.07921.5380.0340.0340.0000.0000.0000.000
61A175LEU0-0.1090.09718.870-0.009-0.0090.0000.0000.0000.000
62A176VAL00.012-0.13823.0580.0140.0140.0000.0000.0000.000
63A176VAL0-0.0700.11922.5030.0010.0010.0000.0000.0000.000
64A177GLY00.023-0.09524.3760.0190.0190.0000.0000.0000.000
65A178GLN0-0.016-0.01325.9000.0250.0250.0000.0000.0000.000
66A178GLN0-0.1030.07824.9860.0060.0060.0000.0000.0000.000
67A179GLN00.219-0.07025.601-0.005-0.0050.0000.0000.0000.000
68A179GLN0-0.1220.07327.370-0.001-0.0010.0000.0000.0000.000
69A180LEU00.148-0.08222.875-0.019-0.0190.0000.0000.0000.000
70A180LEU0-0.1020.09719.502-0.001-0.0010.0000.0000.0000.000
71A181SER00.038-0.08122.742-0.030-0.0300.0000.0000.0000.000
72A181SER0-0.0290.05725.6920.0030.0030.0000.0000.0000.000
73A182ALA00.003-0.12725.0130.0070.0070.0000.0000.0000.000
74A182ALA0-0.0690.10226.4750.0030.0030.0000.0000.0000.000
75A183VAL0-0.046-0.10022.4370.0050.0050.0000.0000.0000.000
76A183VAL0-0.0860.08720.368-0.005-0.0050.0000.0000.0000.000
77A184MET00.143-0.05819.733-0.044-0.0440.0000.0000.0000.000
78A184MET0-0.1350.04918.650-0.017-0.0170.0000.0000.0000.000
79A185ASP00.093-0.09320.4350.0200.0200.0000.0000.0000.000
80A185ASP-1-0.910-0.83420.974-0.192-0.1920.0000.0000.0000.000
81A186SER00.056-0.07622.340-0.004-0.0040.0000.0000.0000.000
82A186SER0-0.0450.06926.2970.0060.0060.0000.0000.0000.000
83A187GLU00.083-0.08525.2210.0040.0040.0000.0000.0000.000
84A187GLU-1-0.916-0.81225.141-0.091-0.0910.0000.0000.0000.000
85A188ALA00.115-0.09520.8680.0270.0270.0000.0000.0000.000
86A188ALA0-0.0770.09419.982-0.007-0.0070.0000.0000.0000.000
87A189ALA00.073-0.10621.6310.0080.0080.0000.0000.0000.000
88A189ALA0-0.0840.09722.317-0.002-0.0020.0000.0000.0000.000
89A190ASN00.020-0.11422.5430.0040.0040.0000.0000.0000.000
90A190ASN0-0.1130.05626.515-0.006-0.0060.0000.0000.0000.000
91A191GLN00.122-0.08123.8250.0100.0100.0000.0000.0000.000
92A191GLN0-0.1180.07922.9380.0110.0110.0000.0000.0000.000
93A192ARG00.055-0.09920.3680.0290.0290.0000.0000.0000.000
94A192ARG10.7160.94514.3640.2980.2980.0000.0000.0000.000
95A193LEU00.121-0.10021.3210.0130.0130.0000.0000.0000.000
96A193LEU0-0.1080.11924.329-0.005-0.0050.0000.0000.0000.000
97A194GLU00.061-0.11224.0390.0060.0060.0000.0000.0000.000
98A194GLU-1-0.938-0.80125.992-0.049-0.0490.0000.0000.0000.000
99A195ALA00.117-0.08722.0100.0140.0140.0000.0000.0000.000
100A195ALA0-0.1130.09021.4110.0020.0020.0000.0000.0000.000
101A196GLY0-0.030-0.14522.4510.0170.0170.0000.0000.0000.000
102A197LYS00.0670.02023.0320.0050.0050.0000.0000.0000.000
103A197LYS10.7641.00627.1170.0520.0520.0000.0000.0000.000
104A198SER00.134-0.03526.4780.0030.0030.0000.0000.0000.000
105A198SER0-0.0480.07325.6600.0070.0070.0000.0000.0000.000
106A199ALA00.073-0.07223.1010.0110.0110.0000.0000.0000.000
107A199ALA0-0.0910.06622.562-0.002-0.0020.0000.0000.0000.000
108A200VAL00.066-0.11724.5300.0140.0140.0000.0000.0000.000
109A200VAL0-0.0950.10924.750-0.002-0.0020.0000.0000.0000.000
110A201GLU00.021-0.12526.6740.0020.0020.0000.0000.0000.000
111A201GLU-1-1.033-0.88229.648-0.011-0.0110.0000.0000.0000.000
112A202ASN00.006-0.09028.3610.0000.0000.0000.0000.0000.000
113A202ASN0-0.1780.02827.7070.0060.0060.0000.0000.0000.000
114A203GLY00.025-0.08827.4250.0110.0110.0000.0000.0000.000
115A204THR0-0.014-0.03024.5090.0060.0060.0000.0000.0000.000
116A204THR0-0.0450.08723.7840.0070.0070.0000.0000.0000.000
117A205ALA00.166-0.05019.892-0.024-0.0240.0000.0000.0000.000
118A205ALA0-0.1130.07318.8660.0060.0060.0000.0000.0000.000
119A206THR0-0.078-0.12919.3460.0250.0250.0000.0000.0000.000
120A206THR00.0040.10320.845-0.003-0.0030.0000.0000.0000.000
121A207ARG00.070-0.11117.263-0.021-0.0210.0000.0000.0000.000
122A207ARG10.8161.01913.229-0.381-0.3810.0000.0000.0000.000
123A208SER00.008-0.02716.8550.0070.0070.0000.0000.0000.000
124A208SER00.0370.08818.776-0.017-0.0170.0000.0000.0000.000
125A209GLU00.079-0.11215.889-0.012-0.0120.0000.0000.0000.000
126A209GLU-1-0.897-0.78614.8500.2460.2460.0000.0000.0000.000
127A210ASP00.041-0.06915.9240.0170.0170.0000.0000.0000.000
128A210ASP-1-0.809-0.75616.136-0.229-0.2290.0000.0000.0000.000
129A211ALA00.132-0.10515.604-0.020-0.0200.0000.0000.0000.000
130A211ALA0-0.0950.11117.6440.0070.0070.0000.0000.0000.000
131A212VAL00.061-0.12215.8060.0320.0320.0000.0000.0000.000
132A212VAL0-0.0460.14216.273-0.007-0.0070.0000.0000.0000.000
133A213GLY0-0.001-0.09415.500-0.074-0.0740.0000.0000.0000.000
134A214GLY0-0.030-0.03715.8180.0490.0490.0000.0000.0000.000
135A215ARG00.0810.02912.4170.0680.0680.0000.0000.0000.000
136A215ARG10.7310.9718.1351.3551.3550.0000.0000.0000.000
137A216HIS00.101-0.08711.7720.0270.0270.0000.0000.0000.000
138A216HIS0-0.0670.09812.2060.0500.0500.0000.0000.0000.000
139A217TYR00.060-0.12010.811-0.111-0.1110.0000.0000.0000.000
140A217TYR0-0.0750.10510.311-0.098-0.0980.0000.0000.0000.000
141A218HIS00.174-0.05911.1690.0360.0360.0000.0000.0000.000
142A218HIS0-0.1830.05711.0110.0970.0970.0000.0000.0000.000
143A219ASN00.053-0.09811.592-0.014-0.0140.0000.0000.0000.000
144A219ASN0-0.0970.06314.426-0.086-0.0860.0000.0000.0000.000
145A220GLN00.094-0.06714.0330.0660.0660.0000.0000.0000.000
146A220GLN0-0.0710.07012.1450.1110.1110.0000.0000.0000.000
147A221TYR00.048-0.09215.375-0.060-0.0600.0000.0000.0000.000
148A221TYR0-0.0810.09718.410-0.015-0.0150.0000.0000.0000.000
149A222ILE00.123-0.09718.4440.0360.0360.0000.0000.0000.000
150A222ILE0-0.1590.06215.2150.0060.0060.0000.0000.0000.000
151A223PRO00.104-0.04919.580-0.032-0.0320.0000.0000.0000.000
152A224VAL00.071-0.00122.7020.0150.0150.0000.0000.0000.000
153A224VAL0-0.1240.07821.434-0.003-0.0030.0000.0000.0000.000
154A225ASP00.096-0.06023.7910.0020.0020.0000.0000.0000.000
155A225ASP-1-1.015-0.85727.258-0.044-0.0440.0000.0000.0000.000
156A226SER00.109-0.04026.439-0.006-0.0060.0000.0000.0000.000
157A226SER0-0.0310.03826.7030.0010.0010.0000.0000.0000.000
158A227HIS00.144-0.00827.975-0.002-0.0020.0000.0000.0000.000
159A227HIS0-0.1130.04430.858-0.005-0.0050.0000.0000.0000.000
160A228ARG00.132-0.04731.790-0.001-0.0010.0000.0000.0000.000
161A228ARG10.7230.95329.4310.0330.0330.0000.0000.0000.000
162A229LYS00.050-0.07228.831-0.001-0.0010.0000.0000.0000.000
163A229LYS10.8451.04125.2180.1010.1010.0000.0000.0000.000
164A230SER00.109-0.08928.445-0.013-0.0130.0000.0000.0000.000
165A230SER0-0.0010.10330.3680.0030.0030.0000.0000.0000.000
166A231ASP00.046-0.12428.2480.0050.0050.0000.0000.0000.000
167A231ASP-1-0.945-0.82429.414-0.086-0.0860.0000.0000.0000.000
168A232THR0-0.001-0.08425.237-0.009-0.0090.0000.0000.0000.000
169A232THR0-0.0800.03524.413-0.002-0.0020.0000.0000.0000.000
170A233PHE00.138-0.07521.9210.0190.0190.0000.0000.0000.000
171A233PHE0-0.0390.11919.843-0.001-0.0010.0000.0000.0000.000
172A234GLN00.070-0.07717.543-0.029-0.0290.0000.0000.0000.000
173A234GLN0-0.0850.07316.714-0.028-0.0280.0000.0000.0000.000
174A235LEU00.146-0.08116.4160.0590.0590.0000.0000.0000.000
175A235LEU0-0.1520.10715.110-0.001-0.0010.0000.0000.0000.000
176A236VAL00.097-0.10512.266-0.105-0.1050.0000.0000.0000.000
177A236VAL0-0.1170.08610.2610.0120.0120.0000.0000.0000.000
178A237SER00.103-0.06711.1770.1440.1440.0000.0000.0000.000
179A237SER0-0.1010.04511.959-0.061-0.0610.0000.0000.0000.000
180A238ARG00.121-0.0707.476-0.472-0.4720.0000.0000.0000.000
181A238ARG10.7421.0126.050-0.586-0.5860.0000.0000.0000.000
182A239ASP00.133-0.0846.7930.3930.3930.0000.0000.0000.000
183A239ASP-1-0.844-0.7466.161-1.374-1.3740.0000.0000.0000.000
184A240ILE00.005-0.1156.325-0.103-0.1030.0000.0000.0000.000
185A240ILE0-0.1140.0938.2110.0650.0650.0000.0000.0000.000
186A241THR0-0.069-0.1808.3460.1700.1700.0000.0000.0000.000
187A241THR00.0210.0379.2350.0310.0310.0000.0000.0000.000