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FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: J3419

Calculation Name: 1HWG-A-Xray372

Preferred Name: Growth hormone receptor

Target Type: SINGLE PROTEIN

Ligand Name:

ligand 3-letter code:

PDB ID: 1HWG

Chain ID: A

ChEMBL ID: CHEMBL1976

UniProt ID: P10912

Base Structure: X-ray

Registration Date: 2023-03-13

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 190
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2166630.476841
FMO2-HF: Nuclear repulsion 2089220.871052
FMO2-HF: Total energy -77409.60579
FMO2-MP2: Total energy -77634.806837


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:PHE)


Summations of interaction energy for fragment #1(A:1:PHE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-4.343-0.3470.73-2.067-2.66-0.006
Interaction energy analysis for fragmet #1(A:1:PHE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.027 / q_NPA : 0.016
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3THR00.0520.0172.615-5.019-1.1280.731-2.060-2.563-0.006
4A4ILE0-0.025-0.0064.8710.4820.587-0.001-0.007-0.0970.000
5A5PRO00.0050.0067.7880.0290.0290.0000.0000.0000.000
6A6LEU00.0730.01310.8620.0250.0250.0000.0000.0000.000
7A7SER00.0820.04012.8880.0220.0220.0000.0000.0000.000
8A8ARG10.9620.9749.3951.0131.0130.0000.0000.0000.000
9A9LEU0-0.047-0.0059.8060.0120.0120.0000.0000.0000.000
10A10PHE00.0710.01113.6240.0570.0570.0000.0000.0000.000
11A11ASP-1-0.890-0.93517.147-0.364-0.3640.0000.0000.0000.000
12A12ASN0-0.027-0.01513.8910.0890.0890.0000.0000.0000.000
13A13ALA0-0.0020.00317.2240.0450.0450.0000.0000.0000.000
14A14MET0-0.005-0.00618.7860.0360.0360.0000.0000.0000.000
15A15LEU00.0000.00320.2260.0340.0340.0000.0000.0000.000
16A16ARG10.7860.88918.7840.3070.3070.0000.0000.0000.000
17A17ALA00.019-0.00122.6360.0230.0230.0000.0000.0000.000
18A18HIS0-0.0010.02124.5880.0260.0260.0000.0000.0000.000
19A19ARG10.8140.91525.7530.1580.1580.0000.0000.0000.000
20A20LEU0-0.007-0.01624.8550.0160.0160.0000.0000.0000.000
21A21HIS0-0.020-0.00428.2560.0230.0230.0000.0000.0000.000
22A22GLN0-0.012-0.00330.4540.0040.0040.0000.0000.0000.000
23A23LEU0-0.023-0.02029.6370.0110.0110.0000.0000.0000.000
24A24ALA0-0.0010.01832.5720.0100.0100.0000.0000.0000.000
25A25PHE0-0.029-0.01534.2980.0090.0090.0000.0000.0000.000
26A26ASP-1-0.822-0.91836.127-0.103-0.1030.0000.0000.0000.000
27A27THR0-0.052-0.03636.2350.0070.0070.0000.0000.0000.000
28A28TYR0-0.060-0.03038.3310.0050.0050.0000.0000.0000.000
29A29GLN0-0.015-0.02640.1270.0040.0040.0000.0000.0000.000
30A30GLU-1-0.766-0.87541.522-0.069-0.0690.0000.0000.0000.000
31A31PHE0-0.014-0.00342.7190.0050.0050.0000.0000.0000.000
32A32GLU-1-0.873-0.95844.321-0.074-0.0740.0000.0000.0000.000
33A33GLU-1-0.970-0.98346.195-0.067-0.0670.0000.0000.0000.000
34A34ALA0-0.035-0.00447.8160.0030.0030.0000.0000.0000.000
35A35TYR0-0.094-0.04246.5360.0030.0030.0000.0000.0000.000
36A36ILE0-0.078-0.03947.4510.0010.0010.0000.0000.0000.000
37A37PRO00.0590.05150.160-0.002-0.0020.0000.0000.0000.000
38A38LYS10.9440.94350.4140.0650.0650.0000.0000.0000.000
39A39GLU-1-0.907-0.94152.875-0.049-0.0490.0000.0000.0000.000
40A40GLN00.0820.03651.7650.0000.0000.0000.0000.0000.000
41A41LYS10.9551.00845.5820.0770.0770.0000.0000.0000.000
42A42TYR0-0.065-0.05149.421-0.003-0.0030.0000.0000.0000.000
43A43SER00.005-0.01551.6700.0000.0000.0000.0000.0000.000
44A44PHE00.0170.01343.2990.0010.0010.0000.0000.0000.000
45A45LEU00.017-0.01044.783-0.002-0.0020.0000.0000.0000.000
46A46GLN0-0.073-0.02048.016-0.001-0.0010.0000.0000.0000.000
47A47ASN0-0.064-0.02950.2440.0040.0040.0000.0000.0000.000
48A48PRO00.0100.00549.222-0.003-0.0030.0000.0000.0000.000
49A49GLN00.0140.01343.3260.0040.0040.0000.0000.0000.000
50A50THR0-0.043-0.04645.704-0.002-0.0020.0000.0000.0000.000
51A51SER0-0.067-0.00344.045-0.003-0.0030.0000.0000.0000.000
52A52LEU0-0.083-0.01841.472-0.002-0.0020.0000.0000.0000.000
53A53CYS-1-0.689-0.84337.217-0.102-0.1020.0000.0000.0000.000
54A54PHE0-0.048-0.04432.740-0.002-0.0020.0000.0000.0000.000
55A55SER0-0.062-0.06132.6950.0010.0010.0000.0000.0000.000
56A56GLU-1-0.886-0.95133.843-0.111-0.1110.0000.0000.0000.000
57A57SER0-0.068-0.02834.6420.0030.0030.0000.0000.0000.000
58A58ILE0-0.076-0.02929.563-0.004-0.0040.0000.0000.0000.000
59A59PRO0-0.0210.00431.8050.0020.0020.0000.0000.0000.000
60A60THR0-0.017-0.01530.764-0.011-0.0110.0000.0000.0000.000
61A61PRO0-0.012-0.00830.9270.0070.0070.0000.0000.0000.000
62A62SER00.0230.02033.9270.0010.0010.0000.0000.0000.000
63A63ASN00.0380.02536.303-0.001-0.0010.0000.0000.0000.000
64A64ARG11.0001.00734.2900.1500.1500.0000.0000.0000.000
65A65GLU-1-0.959-0.98134.411-0.129-0.1290.0000.0000.0000.000
66A66GLU-1-0.827-0.93535.061-0.135-0.1350.0000.0000.0000.000
67A67THR0-0.017-0.02529.893-0.008-0.0080.0000.0000.0000.000
68A68GLN0-0.068-0.05030.295-0.008-0.0080.0000.0000.0000.000
69A69GLN0-0.0200.00030.984-0.007-0.0070.0000.0000.0000.000
70A70LYS10.9260.99228.0160.1680.1680.0000.0000.0000.000
71A71SER00.0590.04024.726-0.011-0.0110.0000.0000.0000.000
72A72ASN00.1000.03320.7090.0280.0280.0000.0000.0000.000
73A73LEU00.0040.01018.302-0.002-0.0020.0000.0000.0000.000
74A74GLU-1-0.945-0.96821.488-0.198-0.1980.0000.0000.0000.000
75A75LEU00.0440.02824.1960.0070.0070.0000.0000.0000.000
76A76LEU00.0190.03617.7720.0040.0040.0000.0000.0000.000
77A77ARG10.8800.92521.5770.2340.2340.0000.0000.0000.000
78A78ILE00.004-0.01222.8340.0120.0120.0000.0000.0000.000
79A79SER00.011-0.01522.7740.0160.0160.0000.0000.0000.000
80A80LEU0-0.033-0.00519.2350.0070.0070.0000.0000.0000.000
81A81LEU0-0.044-0.02022.6300.0150.0150.0000.0000.0000.000
82A82LEU00.0270.02425.9580.0150.0150.0000.0000.0000.000
83A83ILE00.0150.02322.5610.0120.0120.0000.0000.0000.000
84A84GLN0-0.040-0.04721.4540.0240.0240.0000.0000.0000.000
85A85SER0-0.039-0.02925.6660.0160.0160.0000.0000.0000.000
86A86TRP0-0.008-0.02728.3870.0150.0150.0000.0000.0000.000
87A87LEU0-0.066-0.01623.6500.0070.0070.0000.0000.0000.000
88A88GLU-1-0.927-0.96828.010-0.084-0.0840.0000.0000.0000.000
89A89PRO0-0.0180.00131.3740.0070.0070.0000.0000.0000.000
90A90VAL00.0500.03830.1330.0060.0060.0000.0000.0000.000
91A91GLN0-0.041-0.01032.8840.0030.0030.0000.0000.0000.000
92A92PHE0-0.040-0.03434.9070.0070.0070.0000.0000.0000.000
93A93LEU00.0110.01234.9660.0040.0040.0000.0000.0000.000
94A94ARG10.8470.91235.6200.0640.0640.0000.0000.0000.000
95A95SER0-0.035-0.03337.9650.0020.0020.0000.0000.0000.000
96A96VAL0-0.0090.00839.7660.0030.0030.0000.0000.0000.000
97A97PHE0-0.002-0.02833.7820.0000.0000.0000.0000.0000.000
98A98ALA0-0.043-0.01038.4270.0010.0010.0000.0000.0000.000
99A99ASN0-0.055-0.03340.2820.0040.0040.0000.0000.0000.000
100A100SER0-0.0290.00739.002-0.001-0.0010.0000.0000.0000.000
101A101LEU0-0.069-0.02840.1960.0020.0020.0000.0000.0000.000
102A102VAL00.0150.01135.135-0.002-0.0020.0000.0000.0000.000
103A103TYR00.0290.00630.099-0.003-0.0030.0000.0000.0000.000
104A104GLY0-0.015-0.01131.219-0.009-0.0090.0000.0000.0000.000
105A105ALA00.0400.02831.422-0.008-0.0080.0000.0000.0000.000
106A106SER00.0090.01131.7670.0080.0080.0000.0000.0000.000
107A107ASP-1-0.740-0.85931.870-0.082-0.0820.0000.0000.0000.000
108A108SER0-0.013-0.00529.730-0.007-0.0070.0000.0000.0000.000
109A109ASN0-0.007-0.00927.249-0.011-0.0110.0000.0000.0000.000
110A110VAL00.0150.00526.911-0.015-0.0150.0000.0000.0000.000
111A111TYR0-0.0150.00024.968-0.016-0.0160.0000.0000.0000.000
112A112ASP-1-0.871-0.94623.439-0.135-0.1350.0000.0000.0000.000
113A113LEU0-0.060-0.03522.244-0.025-0.0250.0000.0000.0000.000
114A114LEU0-0.0170.00322.461-0.026-0.0260.0000.0000.0000.000
115A115LYS10.8530.92320.3660.1730.1730.0000.0000.0000.000
116A116ASP-1-0.808-0.89017.016-0.365-0.3650.0000.0000.0000.000
117A117LEU0-0.037-0.01017.455-0.052-0.0520.0000.0000.0000.000
118A118GLU-1-0.827-0.91918.483-0.266-0.2660.0000.0000.0000.000
119A119GLU-1-0.920-0.95212.413-0.469-0.4690.0000.0000.0000.000
120A120GLY00.0270.02014.025-0.088-0.0880.0000.0000.0000.000
121A121ILE0-0.006-0.01414.653-0.064-0.0640.0000.0000.0000.000
122A122GLN0-0.032-0.01614.765-0.019-0.0190.0000.0000.0000.000
123A123THR0-0.055-0.0339.300-0.092-0.0920.0000.0000.0000.000
124A124LEU0-0.029-0.02411.559-0.097-0.0970.0000.0000.0000.000
125A125MET0-0.054-0.01913.842-0.003-0.0030.0000.0000.0000.000
126A126GLY0-0.0270.00011.5760.0320.0320.0000.0000.0000.000
127A127ARG10.8070.9067.9131.3521.3520.0000.0000.0000.000
128A128LEU00.0110.00311.9110.0220.0220.0000.0000.0000.000
129A129GLU-1-0.980-0.98615.246-0.322-0.3220.0000.0000.0000.000
130A130ASP-1-0.839-0.92716.936-0.454-0.4540.0000.0000.0000.000
131A131GLY00.0120.01519.9220.0330.0330.0000.0000.0000.000
132A132SER0-0.040-0.04022.8040.0200.0200.0000.0000.0000.000
133A133PRO00.0320.03523.046-0.014-0.0140.0000.0000.0000.000
134A134ARG10.9560.99316.2060.4000.4000.0000.0000.0000.000
135A135THR0-0.079-0.05924.0070.0130.0130.0000.0000.0000.000
136A136GLY00.0870.02827.7170.0000.0000.0000.0000.0000.000
137A137GLN0-0.033-0.02229.336-0.003-0.0030.0000.0000.0000.000
138A138ILE00.0880.06226.2490.0010.0010.0000.0000.0000.000
139A139PHE00.0140.00121.671-0.009-0.0090.0000.0000.0000.000
140A140LYS10.8490.94026.0480.1440.1440.0000.0000.0000.000
141A141GLN00.021-0.00128.0510.0120.0120.0000.0000.0000.000
142A142THR0-0.055-0.01927.004-0.009-0.0090.0000.0000.0000.000
143A143TYR00.0940.04426.5020.0050.0050.0000.0000.0000.000
144A144SER0-0.007-0.00829.2140.0100.0100.0000.0000.0000.000
145A145LYS10.8480.93330.3710.1190.1190.0000.0000.0000.000
146A146PHE00.0840.04434.7690.0020.0020.0000.0000.0000.000
147A147ASP-1-0.803-0.89237.324-0.071-0.0710.0000.0000.0000.000
148A148THR0-0.045-0.01537.9960.0010.0010.0000.0000.0000.000
149A149ASN0-0.074-0.04040.9430.0050.0050.0000.0000.0000.000
150A150SER0-0.029-0.01744.6810.0000.0000.0000.0000.0000.000
151A151HIS0-0.003-0.01445.0610.0050.0050.0000.0000.0000.000
152A152ASN0-0.090-0.04948.8710.0030.0030.0000.0000.0000.000
153A153ASP-1-0.856-0.93545.754-0.061-0.0610.0000.0000.0000.000
154A154ASP-1-0.844-0.93149.444-0.050-0.0500.0000.0000.0000.000
155A155ALA00.002-0.00347.087-0.003-0.0030.0000.0000.0000.000
156A156LEU0-0.0010.01446.492-0.003-0.0030.0000.0000.0000.000
157A157LEU00.0390.00546.402-0.004-0.0040.0000.0000.0000.000
158A158LYS10.9100.98841.9890.0640.0640.0000.0000.0000.000
159A159ASN0-0.044-0.03242.085-0.005-0.0050.0000.0000.0000.000
160A160TYR0-0.036-0.02141.589-0.005-0.0050.0000.0000.0000.000
161A161GLY00.000-0.01042.313-0.004-0.0040.0000.0000.0000.000
162A162LEU00.0430.01537.661-0.004-0.0040.0000.0000.0000.000
163A163LEU0-0.011-0.01737.404-0.007-0.0070.0000.0000.0000.000
164A164TYR0-0.039-0.02937.907-0.007-0.0070.0000.0000.0000.000
165A165CYS-1-0.810-0.90036.677-0.105-0.1050.0000.0000.0000.000
166A166PHE0-0.098-0.03930.166-0.009-0.0090.0000.0000.0000.000
167A167ARG10.9560.97333.0270.0960.0960.0000.0000.0000.000
168A168LYS10.9280.96833.9710.1010.1010.0000.0000.0000.000
169A169ASP-1-0.801-0.87830.852-0.145-0.1450.0000.0000.0000.000
170A170MET0-0.055-0.03327.825-0.019-0.0190.0000.0000.0000.000
171A171ASP-1-0.873-0.92329.146-0.165-0.1650.0000.0000.0000.000
172A172LYS10.9130.97230.4250.1310.1310.0000.0000.0000.000
173A173VAL0-0.0080.00624.357-0.015-0.0150.0000.0000.0000.000
174A174GLU-1-0.828-0.92425.772-0.218-0.2180.0000.0000.0000.000
175A175THR0-0.034-0.02926.485-0.013-0.0130.0000.0000.0000.000
176A176PHE0-0.040-0.04525.958-0.004-0.0040.0000.0000.0000.000
177A177LEU0-0.017-0.01920.325-0.021-0.0210.0000.0000.0000.000
178A178ARG10.9530.99422.8940.2390.2390.0000.0000.0000.000
179A179ILE00.0020.00624.742-0.007-0.0070.0000.0000.0000.000
180A180VAL0-0.043-0.02820.108-0.005-0.0050.0000.0000.0000.000
181A181GLN00.0210.00020.589-0.002-0.0020.0000.0000.0000.000
182A182CYS-1-0.766-0.87221.660-0.285-0.2850.0000.0000.0000.000
183A183ARG10.6830.83923.2640.2610.2610.0000.0000.0000.000
184A184SER0-0.054-0.02718.204-0.015-0.0150.0000.0000.0000.000
185A185VAL0-0.112-0.05817.516-0.046-0.0460.0000.0000.0000.000
186A186GLU-1-0.865-0.93219.946-0.267-0.2670.0000.0000.0000.000
187A187GLY0-0.045-0.02522.440-0.015-0.0150.0000.0000.0000.000
188A188SER0-0.131-0.06821.8800.0110.0110.0000.0000.0000.000
189A189CYS-1-0.857-0.93623.939-0.256-0.2560.0000.0000.0000.000
190A190GLY0-0.085-0.03927.4110.0150.0150.0000.0000.0000.000