Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: J36V9

Calculation Name: 4FHR-B-Xray318

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4FHR

Chain ID: B

ChEMBL ID:

UniProt ID: Q9WY63

Base Structure: X-ray

Registration Date: 2021-09-07

Reference: C. Watanabe, S. Koyama, K. Kamisaka, D. Takaya, T. Honma et. al., Interaction energy analysis of Apo structure dataset on FMODB, To be pubulished.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 1.20200129
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 211
LigandCharge
Software ABINIT-MP - Open Ver.1 Rev. 15 / 20190524
Total energy (hartree)
FMO2-HF: Electronic energy -2316543.576189
FMO2-HF: Nuclear repulsion 2233402.80396
FMO2-HF: Total energy -83140.772229
FMO2-MP2: Total energy -83384.325961


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(B:112:ACE )


Summations of interaction energy for fragment #1(B:112:ACE )
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-1.477-0.3920.016-0.541-0.56-0.001
Interaction energy analysis for fragmet #1(B:112:ACE )
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.016 / q_NPA : -0.003
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3B114MET 00.0650.0613.8420.2971.362-0.007-0.456-0.603-0.001
4B115ASP -1-0.860-0.9256.663-0.334-0.3340.0000.0000.0000.000
5B116PRO 00.0310.0079.1710.1110.1110.0000.0000.0000.000
6B117VAL 00.0500.03212.4550.0600.0600.0000.0000.0000.000
7B118GLN 0-0.005-0.01310.0750.0210.0210.0000.0000.0000.000
8B119LEU 00.003-0.00211.6860.0330.0330.0000.0000.0000.000
9B120VAL 00.0200.02213.9250.0300.0300.0000.0000.0000.000
10B121ASN 0-0.025-0.01316.7520.0220.0220.0000.0000.0000.000
11B122PHE 0-0.072-0.03315.7080.0220.0220.0000.0000.0000.000
12B123LEU 00.014-0.02016.2960.0130.0130.0000.0000.0000.000
13B124GLN 0-0.0170.00719.3010.0010.0010.0000.0000.0000.000
14B125SER 0-0.034-0.01622.0610.0110.0110.0000.0000.0000.000
15B126GLU -1-0.988-0.98020.504-0.048-0.0480.0000.0000.0000.000
16B127HIS 00.0120.01323.750-0.006-0.0060.0000.0000.0000.000
17B128PRO 00.0910.02524.570-0.008-0.0080.0000.0000.0000.000
18B129GLN 00.0290.01024.976-0.009-0.0090.0000.0000.0000.000
19B130THR 0-0.020-0.01120.673-0.006-0.0060.0000.0000.0000.000
20B131ILE 00.0270.02020.242-0.015-0.0150.0000.0000.0000.000
21B132ALA 00.0300.01720.264-0.021-0.0210.0000.0000.0000.000
22B133VAL 0-0.051-0.01119.797-0.012-0.0120.0000.0000.0000.000
23B134VAL 0-0.004-0.00615.133-0.015-0.0150.0000.0000.0000.000
24B135LEU 00.005-0.01316.372-0.038-0.0380.0000.0000.0000.000
25B136SER 0-0.022-0.02417.764-0.019-0.0190.0000.0000.0000.000
26B137TYR 0-0.052-0.02115.0660.0170.0170.0000.0000.0000.000
27B138LEU 0-0.092-0.03511.782-0.055-0.0550.0000.0000.0000.000
28B139ASP -1-0.863-0.94013.292-0.397-0.3970.0000.0000.0000.000
29B140PRO 00.0580.03315.120-0.012-0.0120.0000.0000.0000.000
30B141PRO 00.0490.03515.8960.0130.0130.0000.0000.0000.000
31B142VAL 0-0.011-0.00611.500-0.004-0.0040.0000.0000.0000.000
32B143ALA 0-0.009-0.00914.6610.0330.0330.0000.0000.0000.000
33B144ALA 00.0470.01817.2350.0310.0310.0000.0000.0000.000
34B145GLN 0-0.0260.00114.125-0.010-0.0100.0000.0000.0000.000
35B146ILE 0-0.061-0.03413.7620.0230.0230.0000.0000.0000.000
36B147LEU 00.002-0.00117.7060.0300.0300.0000.0000.0000.000
37B148GLY 00.0170.00021.1830.0220.0220.0000.0000.0000.000
38B149ALA 0-0.063-0.02419.3710.0150.0150.0000.0000.0000.000
39B150LEU 0-0.051-0.02220.2550.0120.0120.0000.0000.0000.000
40B151PRO 00.0140.00122.9870.0040.0040.0000.0000.0000.000
41B152GLU -1-0.853-0.90926.487-0.073-0.0730.0000.0000.0000.000
42B153GLU -1-0.918-0.97229.057-0.057-0.0570.0000.0000.0000.000
43B154LEU 0-0.024-0.01225.1900.0010.0010.0000.0000.0000.000
44B155GLN 00.0290.04624.8590.0050.0050.0000.0000.0000.000
45B156THR 00.0750.01427.277-0.007-0.0070.0000.0000.0000.000
46B157GLU -1-0.861-0.91429.303-0.069-0.0690.0000.0000.0000.000
47B158VAL 0-0.008-0.01422.874-0.001-0.0010.0000.0000.0000.000
48B159LEU 00.0190.02125.032-0.004-0.0040.0000.0000.0000.000
49B160LYS 10.9410.96926.7190.0660.0660.0000.0000.0000.000
50B161ARG 10.8290.89427.1530.0740.0740.0000.0000.0000.000
51B162ILE 0-0.0070.00722.0640.0000.0000.0000.0000.0000.000
52B163ALA 0-0.040-0.01625.5470.0000.0000.0000.0000.0000.000
53B164LEU 0-0.043-0.02828.4560.0050.0050.0000.0000.0000.000
54B165LEU 0-0.074-0.00223.3610.0070.0070.0000.0000.0000.000
55B166GLU -1-0.913-0.94727.588-0.069-0.0690.0000.0000.0000.000
56B167ARG 10.9340.94023.5320.0780.0780.0000.0000.0000.000
57B168THR 00.0100.01323.1340.0080.0080.0000.0000.0000.000
58B169SER 00.0020.00825.3440.0010.0010.0000.0000.0000.000
59B170PRO 00.0590.00023.287-0.003-0.0030.0000.0000.0000.000
60B171GLU -1-0.918-0.96222.659-0.020-0.0200.0000.0000.0000.000
61B172VAL 0-0.0180.00123.2770.0030.0030.0000.0000.0000.000
62B173VAL 00.0060.00118.4810.0000.0000.0000.0000.0000.000
63B174LYS 10.9900.99118.6800.0250.0250.0000.0000.0000.000
64B175GLU -1-0.892-0.92718.9060.0020.0020.0000.0000.0000.000
65B176ILE 0-0.005-0.01417.1960.0060.0060.0000.0000.0000.000
66B177GLU -1-0.943-0.98014.755-0.126-0.1260.0000.0000.0000.000
67B178ARG 10.9290.96614.5740.0120.0120.0000.0000.0000.000
68B179ASN 0-0.085-0.05415.9040.0290.0290.0000.0000.0000.000
69B180LEU 0-0.0010.01012.5200.0160.0160.0000.0000.0000.000
70B181GLU -1-0.934-0.95310.9280.1130.1130.0000.0000.0000.000
71B182LYS 10.8570.93111.4810.0140.0140.0000.0000.0000.000
72B183LYS 10.8800.93313.4390.0340.0340.0000.0000.0000.000
73B184ILE 00.0130.0258.722-0.013-0.0130.0000.0000.0000.000
74B185SER 0-0.012-0.0086.2020.0260.0260.0000.0000.0000.000
75B186GLY 0-0.025-0.0203.457-0.238-0.1370.023-0.075-0.0480.000
76B187PHE 00.0190.0004.075-0.669-0.7500.000-0.0100.0910.000
77B188NME 00.0300.0327.2630.1260.1260.0000.0000.0000.000
78B194ACE 0-0.028-0.02625.1270.0030.0030.0000.0000.0000.000
79B195VAL 0-0.036-0.02619.311-0.004-0.0040.0000.0000.0000.000
80B196GLY 00.0440.03722.117-0.012-0.0120.0000.0000.0000.000
81B197GLY 00.0310.02624.1940.0010.0010.0000.0000.0000.000
82B198ILE 0-0.003-0.02626.856-0.007-0.0070.0000.0000.0000.000
83B199ASP -1-0.853-0.91626.287-0.115-0.1150.0000.0000.0000.000
84B200THR 00.0290.01921.374-0.007-0.0070.0000.0000.0000.000
85B201ALA 0-0.009-0.00523.695-0.009-0.0090.0000.0000.0000.000
86B202ALA 00.0140.00925.935-0.001-0.0010.0000.0000.0000.000
87B203GLU -1-0.888-0.94921.085-0.217-0.2170.0000.0000.0000.000
88B204ILE 0-0.026-0.01820.615-0.008-0.0080.0000.0000.0000.000
89B205MET 0-0.042-0.03422.8660.0000.0000.0000.0000.0000.000
90B206ASN 0-0.030-0.01825.5760.0100.0100.0000.0000.0000.000
91B207ASN 0-0.075-0.03920.672-0.015-0.0150.0000.0000.0000.000
92B208LEU 0-0.071-0.01022.656-0.006-0.0060.0000.0000.0000.000
93B209ASP -1-0.815-0.88124.459-0.113-0.1130.0000.0000.0000.000
94B210ARG 10.9700.96826.5830.0880.0880.0000.0000.0000.000
95B211THR 0-0.051-0.02330.1140.0060.0060.0000.0000.0000.000
96B212THR 0-0.035-0.04525.9760.0090.0090.0000.0000.0000.000
97B213GLU -1-0.830-0.90628.311-0.094-0.0940.0000.0000.0000.000
98B214LYS 10.9360.96429.5640.0690.0690.0000.0000.0000.000
99B215LYS 10.7720.87229.4470.0910.0910.0000.0000.0000.000
100B216ILE 00.007-0.00727.3180.0050.0050.0000.0000.0000.000
101B217MET 00.0090.00631.8100.0060.0060.0000.0000.0000.000
102B218ASP -1-0.870-0.94534.018-0.059-0.0590.0000.0000.0000.000
103B219LYS 10.8160.91734.2840.0630.0630.0000.0000.0000.000
104B220LEU 00.0440.00531.4470.0040.0040.0000.0000.0000.000
105B221VAL 0-0.0040.00735.8980.0030.0030.0000.0000.0000.000
106B222GLN 0-0.080-0.03639.1380.0030.0030.0000.0000.0000.000
107B223GLU -1-0.955-0.98435.644-0.058-0.0580.0000.0000.0000.000
108B224ASN 0-0.074-0.04236.6560.0030.0030.0000.0000.0000.000
109B225PRO 00.0860.03537.892-0.004-0.0040.0000.0000.0000.000
110B226GLU -1-0.885-0.93139.640-0.052-0.0520.0000.0000.0000.000
111B227LEU 0-0.021-0.00132.422-0.003-0.0030.0000.0000.0000.000
112B228ALA 0-0.018-0.01334.996-0.005-0.0050.0000.0000.0000.000
113B229ASP -1-0.913-0.95635.663-0.062-0.0620.0000.0000.0000.000
114B230GLU -1-0.784-0.88834.613-0.075-0.0750.0000.0000.0000.000
115B231ILE 0-0.023-0.01929.997-0.005-0.0050.0000.0000.0000.000
116B232ARG 10.9560.97132.1710.0650.0650.0000.0000.0000.000
117B233ARG 10.8040.89134.4370.0720.0720.0000.0000.0000.000
118B234ARG 10.7830.87830.5370.0910.0910.0000.0000.0000.000
119B235MET 0-0.057-0.00129.201-0.004-0.0040.0000.0000.0000.000
120B236PHE 00.0110.01530.847-0.003-0.0030.0000.0000.0000.000
121B237VAL 00.0330.01732.6510.0070.0070.0000.0000.0000.000
122B238PHE 00.034-0.00135.1830.0010.0010.0000.0000.0000.000
123B239GLU -1-0.759-0.90834.508-0.068-0.0680.0000.0000.0000.000
124B240ASP -1-0.797-0.88331.445-0.106-0.1060.0000.0000.0000.000
125B241ILE 0-0.024-0.00933.9310.0000.0000.0000.0000.0000.000
126B242LEU 0-0.043-0.02234.0630.0030.0030.0000.0000.0000.000
127B243LYS 10.8740.94729.4240.1130.1130.0000.0000.0000.000
128B244LEU 0-0.031-0.00233.1160.0000.0000.0000.0000.0000.000
129B245ASP -1-0.902-0.95535.675-0.072-0.0720.0000.0000.0000.000
130B246ASP -1-0.845-0.94437.741-0.056-0.0560.0000.0000.0000.000
131B247ARG 10.9270.95341.0580.0530.0530.0000.0000.0000.000
132B248SER 00.0890.03938.5640.0030.0030.0000.0000.0000.000
133B249ILE 00.0360.02939.2880.0020.0020.0000.0000.0000.000
134B250GLN 0-0.083-0.05242.7150.0040.0040.0000.0000.0000.000
135B251LEU 0-0.026-0.02043.6450.0030.0030.0000.0000.0000.000
136B252VAL 00.0300.02742.3310.0010.0010.0000.0000.0000.000
137B253LEU 0-0.037-0.02745.6900.0020.0020.0000.0000.0000.000
138B254ARG 10.8480.93847.8110.0420.0420.0000.0000.0000.000
139B255GLU -1-0.871-0.91848.224-0.039-0.0390.0000.0000.0000.000
140B256VAL 0-0.035-0.00547.2160.0000.0000.0000.0000.0000.000
141B257ASP -1-0.879-0.92850.621-0.032-0.0320.0000.0000.0000.000
142B258THR 0-0.005-0.03052.367-0.001-0.0010.0000.0000.0000.000
143B259ARG 10.9780.99353.0160.0320.0320.0000.0000.0000.000
144B260ASP -1-0.877-0.94250.276-0.038-0.0380.0000.0000.0000.000
145B261LEU 0-0.009-0.00346.578-0.002-0.0020.0000.0000.0000.000
146B262ALA 00.008-0.00748.296-0.002-0.0020.0000.0000.0000.000
147B263LEU 0-0.005-0.01749.504-0.001-0.0010.0000.0000.0000.000
148B264ALA 00.0200.02344.930-0.001-0.0010.0000.0000.0000.000
149B265LEU 00.0140.00144.046-0.002-0.0020.0000.0000.0000.000
150B266LYS 10.8350.91945.6720.0370.0370.0000.0000.0000.000
151B267GLY 0-0.050-0.01243.8310.0000.0000.0000.0000.0000.000
152B268ALA 0-0.0070.00940.819-0.003-0.0030.0000.0000.0000.000
153B269SER 0-0.036-0.02537.6450.0030.0030.0000.0000.0000.000
154B270ASP -1-0.888-0.96339.849-0.048-0.0480.0000.0000.0000.000
155B271GLU -1-0.966-0.97834.524-0.077-0.0770.0000.0000.0000.000
156B272LEU 00.0040.00538.4690.0010.0010.0000.0000.0000.000
157B273LYS 10.9430.96539.8070.0480.0480.0000.0000.0000.000
158B274GLU -1-0.903-0.95641.644-0.043-0.0430.0000.0000.0000.000
159B275LYS 10.8060.94036.9290.0710.0710.0000.0000.0000.000
160B276ILE 00.0220.00841.4400.0010.0010.0000.0000.0000.000
161B277PHE 00.010-0.01544.3270.0030.0030.0000.0000.0000.000
162B278LYS 10.8850.95939.1540.0600.0600.0000.0000.0000.000
163B279ASN 0-0.074-0.03441.9970.0020.0020.0000.0000.0000.000
164B280MET 00.0160.02346.2620.0010.0010.0000.0000.0000.000
165B281SER 00.0030.00249.8450.0010.0010.0000.0000.0000.000
166B282LYS 11.0370.99853.0620.0280.0280.0000.0000.0000.000
167B283ARG 10.9310.95854.6030.0260.0260.0000.0000.0000.000
168B284ALA 00.0240.01153.5090.0000.0000.0000.0000.0000.000
169B285ALA 00.0660.03651.1220.0000.0000.0000.0000.0000.000
170B286ALA 0-0.061-0.02752.5850.0000.0000.0000.0000.0000.000
171B287LEU 00.0330.01355.5020.0000.0000.0000.0000.0000.000
172B288LEU 00.0110.02348.8300.0000.0000.0000.0000.0000.000
173B289LYS 10.9310.95550.0940.0360.0360.0000.0000.0000.000
174B290ASP -1-0.865-0.92853.220-0.028-0.0280.0000.0000.0000.000
175B291GLU -1-0.956-0.98054.578-0.030-0.0300.0000.0000.0000.000
176B292LEU 0-0.059-0.05149.0910.0000.0000.0000.0000.0000.000
177B293GLU -1-1.001-0.99453.112-0.030-0.0300.0000.0000.0000.000
178B294TYR 0-0.032-0.01255.3000.0020.0020.0000.0000.0000.000
179B295MET 0-0.0640.00652.5660.0000.0000.0000.0000.0000.000
180B296GLY 0-0.001-0.00756.4380.0000.0000.0000.0000.0000.000
181B297PRO 0-0.022-0.01554.123-0.001-0.0010.0000.0000.0000.000
182B298VAL 00.0200.01450.5050.0010.0010.0000.0000.0000.000
183B299ARG 10.9140.94750.9610.0310.0310.0000.0000.0000.000
184B300LEU 00.0900.04543.1080.0000.0000.0000.0000.0000.000
185B301LYS 10.9800.98446.5080.0350.0350.0000.0000.0000.000
186B302ASP -1-0.876-0.94147.977-0.036-0.0360.0000.0000.0000.000
187B303VAL 0-0.050-0.01544.9680.0000.0000.0000.0000.0000.000
188B304GLU -1-0.904-0.96841.987-0.055-0.0550.0000.0000.0000.000
189B305GLU -1-0.976-0.97544.487-0.040-0.0400.0000.0000.0000.000
190B306ALA 0-0.011-0.01047.0200.0000.0000.0000.0000.0000.000
191B307GLN 0-0.050-0.03641.523-0.002-0.0020.0000.0000.0000.000
192B308GLN 0-0.0090.00740.530-0.003-0.0030.0000.0000.0000.000
193B309LYS 10.9210.96043.6270.0400.0400.0000.0000.0000.000
194B310ILE 00.0150.01042.8220.0000.0000.0000.0000.0000.000
195B311ILE 00.0240.01438.343-0.001-0.0010.0000.0000.0000.000
196B312ASN 0-0.018-0.01641.218-0.003-0.0030.0000.0000.0000.000
197B313ILE 0-0.0180.00443.4310.0000.0000.0000.0000.0000.000
198B314ILE 00.0040.00538.3500.0000.0000.0000.0000.0000.000
199B315ARG 10.9110.96139.0140.0560.0560.0000.0000.0000.000
200B316ARG 10.8750.93140.3690.0440.0440.0000.0000.0000.000
201B317LEU 0-0.008-0.02042.6950.0010.0010.0000.0000.0000.000
202B318GLU -1-0.942-0.96834.852-0.079-0.0790.0000.0000.0000.000
203B319GLU -1-0.947-0.97139.643-0.054-0.0540.0000.0000.0000.000
204B320ALA 0-0.076-0.03941.0710.0010.0010.0000.0000.0000.000
205B321GLY 0-0.022-0.00340.3230.0020.0020.0000.0000.0000.000
206B322GLU -1-0.997-0.99841.406-0.044-0.0440.0000.0000.0000.000
207B323ILE 0-0.058-0.02937.8420.0000.0000.0000.0000.0000.000
208B324VAL 0-0.007-0.01033.771-0.001-0.0010.0000.0000.0000.000
209B325ILE 0-0.036-0.02331.6890.0010.0010.0000.0000.0000.000
210B326ALA 0-0.044-0.01530.366-0.004-0.0040.0000.0000.0000.000
211B327ARG 00.0470.03127.982-0.041-0.0410.0000.0000.0000.000