FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-04-23

All entries: 37539

Number of unique PDB entries: 7791

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FMODB ID: J3JG9

Calculation Name: 4HWI-B-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4HWI

Chain ID: B

ChEMBL ID:

UniProt ID: Q0WUQ1

Base Structure: X-ray

Registration Date: 2023-06-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 177
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -1571352.595594
FMO2-HF: Nuclear repulsion 1500664.999471
FMO2-HF: Total energy -70687.596123
FMO2-MP2: Total energy -70891.979029


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(B:66:MET)


Summations of interaction energy for fragment #1(B:66:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-6.262-0.2917.852-6.325-7.499-0.014
Interaction energy analysis for fragmet #1(B:66:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.001 / q_NPA : 0.003
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3B68ARG10.8890.9582.901-2.1171.6620.201-1.823-2.1570.002
4B69VAL00.0120.0144.7690.4220.504-0.001-0.007-0.0740.000
5B70ARG10.8660.9258.0370.8510.8510.0000.0000.0000.000
6B71ILE00.0320.01110.9980.0870.0870.0000.0000.0000.000
7B72LYS10.9130.97313.7740.2140.2140.0000.0000.0000.000
8B73TYR00.0450.01317.2080.0170.0170.0000.0000.0000.000
9B74GLY00.0630.03719.5840.0030.0030.0000.0000.0000.000
10B75ALA0-0.025-0.02922.087-0.007-0.0070.0000.0000.0000.000
11B76VAL00.0210.02517.378-0.012-0.0120.0000.0000.0000.000
12B77TYR0-0.029-0.02514.3200.0010.0010.0000.0000.0000.000
13B78HIS00.0640.03112.900-0.034-0.0340.0000.0000.0000.000
14B79GLU-1-0.872-0.9426.291-1.361-1.3610.0000.0000.0000.000
15B80ILE00.0000.0037.3170.0150.0150.0000.0000.0000.000
16B81ASN00.007-0.0032.344-1.602-0.7781.207-0.533-1.4990.001
17B82ILE00.028-0.0013.522-0.3270.6710.035-0.287-0.747-0.002
18B83SER00.0260.0281.898-2.885-1.5855.710-4.983-2.027-0.013
19B84PRO00.013-0.0122.611-0.200-1.3020.7011.310-0.909-0.002
20B85GLN00.0430.0065.2780.2940.384-0.001-0.002-0.0860.000
21B86ALA00.0080.0326.708-0.171-0.1710.0000.0000.0000.000
22B87SER00.0070.0028.506-0.189-0.1890.0000.0000.0000.000
23B88PHE00.017-0.03011.234-0.049-0.0490.0000.0000.0000.000
24B89GLY00.004-0.00613.337-0.046-0.0460.0000.0000.0000.000
25B90GLU-1-0.876-0.93310.2620.5840.5840.0000.0000.0000.000
26B91LEU00.0140.0109.235-0.052-0.0520.0000.0000.0000.000
27B92LYS10.8510.92711.353-0.005-0.0050.0000.0000.0000.000
28B93LYS10.9220.96114.026-0.094-0.0940.0000.0000.0000.000
29B94MET0-0.028-0.0057.0000.0460.0460.0000.0000.0000.000
30B95LEU00.0080.00712.107-0.074-0.0740.0000.0000.0000.000
31B96THR0-0.0350.00014.3150.0080.0080.0000.0000.0000.000
32B97GLY0-0.0200.00515.7800.0060.0060.0000.0000.0000.000
33B98PRO0-0.001-0.00312.9920.0120.0120.0000.0000.0000.000
34B99THR0-0.076-0.05016.2390.0130.0130.0000.0000.0000.000
35B100GLY00.0320.02518.7990.0150.0150.0000.0000.0000.000
36B101ILE00.0030.01720.3300.0190.0190.0000.0000.0000.000
37B102HIS00.1370.06019.994-0.009-0.0090.0000.0000.0000.000
38B103HIS00.0350.00117.9970.0050.0050.0000.0000.0000.000
39B104GLN0-0.124-0.07719.5990.0110.0110.0000.0000.0000.000
40B105ASP-1-0.774-0.84622.688-0.046-0.0460.0000.0000.0000.000
41B106GLN0-0.056-0.02816.993-0.024-0.0240.0000.0000.0000.000
42B107LYS10.9160.96620.8400.0980.0980.0000.0000.0000.000
43B108LEU00.044-0.00114.383-0.015-0.0150.0000.0000.0000.000
44B109MET0-0.0340.00018.7000.0270.0270.0000.0000.0000.000
45B110TYR00.016-0.01014.278-0.022-0.0220.0000.0000.0000.000
46B111LYS10.9410.96517.5080.2000.2000.0000.0000.0000.000
47B112ASP-1-0.869-0.92219.936-0.130-0.1300.0000.0000.0000.000
48B113LYS10.9390.97220.6820.0650.0650.0000.0000.0000.000
49B114GLU-1-0.870-0.95520.228-0.074-0.0740.0000.0000.0000.000
50B115ARG10.8170.92116.2510.1270.1270.0000.0000.0000.000
51B116ASP-1-0.811-0.90118.7640.0330.0330.0000.0000.0000.000
52B117SER00.023-0.01416.786-0.006-0.0060.0000.0000.0000.000
53B118LYS10.9150.95116.052-0.025-0.0250.0000.0000.0000.000
54B119ALA0-0.0250.01716.3310.0270.0270.0000.0000.0000.000
55B120PHE00.0690.02411.621-0.014-0.0140.0000.0000.0000.000
56B121LEU0-0.010-0.0037.286-0.115-0.1150.0000.0000.0000.000
57B122ASP-1-0.784-0.8858.5300.2510.2510.0000.0000.0000.000
58B123VAL0-0.026-0.01110.257-0.069-0.0690.0000.0000.0000.000
59B124SER0-0.101-0.06013.150-0.033-0.0330.0000.0000.0000.000
60B125GLY0-0.048-0.02313.387-0.024-0.0240.0000.0000.0000.000
61B126VAL0-0.064-0.0178.756-0.070-0.0700.0000.0000.0000.000
62B127LYS10.9810.9828.9220.3190.3190.0000.0000.0000.000
63B128ASP-1-0.686-0.8705.304-1.629-1.6290.0000.0000.0000.000
64B129LYS10.7660.8827.4351.0521.0520.0000.0000.0000.000
65B130SER0-0.0250.0109.2390.2040.2040.0000.0000.0000.000
66B131LYS10.9750.98711.3040.2850.2850.0000.0000.0000.000
67B132MET0-0.035-0.00813.2180.0380.0380.0000.0000.0000.000
68B133VAL0-0.025-0.00815.536-0.017-0.0170.0000.0000.0000.000
69B134LEU00.0000.01317.0790.0130.0130.0000.0000.0000.000
70B135ILE0-0.052-0.02919.1040.0020.0020.0000.0000.0000.000
71B136GLU-1-0.910-0.95122.713-0.092-0.0920.0000.0000.0000.000
72B137ASP-1-0.906-0.96524.416-0.050-0.0500.0000.0000.0000.000
73B138PRO00.0520.03027.1570.0060.0060.0000.0000.0000.000
74B139LEU0-0.023-0.01429.7330.0070.0070.0000.0000.0000.000
75B140SER0-0.026-0.03326.2090.0090.0090.0000.0000.0000.000
76B141GLN00.003-0.00528.2130.0100.0100.0000.0000.0000.000
77B142GLU-1-0.855-0.93730.200-0.009-0.0090.0000.0000.0000.000
78B143LYS10.9450.98224.5290.0410.0410.0000.0000.0000.000
79B144ARG10.9460.97126.347-0.017-0.0170.0000.0000.0000.000
80B145PHE0-0.003-0.02828.4800.0080.0080.0000.0000.0000.000
81B146LEU0-0.042-0.01931.7720.0040.0040.0000.0000.0000.000
82B147GLU-1-0.939-0.98526.7540.0130.0130.0000.0000.0000.000
83B148MET0-0.0180.00428.7680.0080.0080.0000.0000.0000.000
84B149ARG10.9681.00830.517-0.002-0.0020.0000.0000.0000.000
85B150LYS10.9370.96931.2480.0040.0040.0000.0000.0000.000
86B151ILE00.0290.02126.4930.0020.0020.0000.0000.0000.000
87B152ALA00.0210.01030.9160.0030.0030.0000.0000.0000.000
88B153LYS10.9190.96133.817-0.012-0.0120.0000.0000.0000.000
89B154THR0-0.002-0.00731.825-0.001-0.0010.0000.0000.0000.000
90B155GLU-1-0.876-0.94331.4520.0610.0610.0000.0000.0000.000
91B156LYS10.9150.96734.226-0.025-0.0250.0000.0000.0000.000
92B157ALA00.0120.00437.8080.0000.0000.0000.0000.0000.000
93B158SER00.0320.01434.350-0.001-0.0010.0000.0000.0000.000
94B159LYS10.9430.94937.029-0.045-0.0450.0000.0000.0000.000
95B160ALA0-0.029-0.00938.3730.0000.0000.0000.0000.0000.000
96B161ILE0-0.010-0.00439.501-0.001-0.0010.0000.0000.0000.000
97B162SER0-0.019-0.01037.8480.0010.0010.0000.0000.0000.000
98B163ASP-1-0.852-0.91840.5880.0440.0440.0000.0000.0000.000
99B164ILE0-0.011-0.00143.463-0.001-0.0010.0000.0000.0000.000
100B165SER0-0.015-0.00442.290-0.001-0.0010.0000.0000.0000.000
101B166LEU0-0.014-0.00441.6340.0000.0000.0000.0000.0000.000
102B167GLU-1-0.810-0.86845.2880.0310.0310.0000.0000.0000.000
103B168VAL0-0.027-0.03047.221-0.001-0.0010.0000.0000.0000.000
104B169ASP-1-0.856-0.90644.7240.0430.0430.0000.0000.0000.000
105B170ARG10.8010.89048.172-0.032-0.0320.0000.0000.0000.000
106B171LEU0-0.031-0.02051.088-0.001-0.0010.0000.0000.0000.000
107B172GLY00.0700.02651.539-0.001-0.0010.0000.0000.0000.000
108B173GLY0-0.024-0.01152.0600.0000.0000.0000.0000.0000.000
109B174ARG10.9330.95553.240-0.025-0.0250.0000.0000.0000.000
110B175VAL00.0180.02655.283-0.001-0.0010.0000.0000.0000.000
111B176SER00.0340.01353.632-0.001-0.0010.0000.0000.0000.000
112B177ALA0-0.038-0.01856.0580.0000.0000.0000.0000.0000.000
113B178PHE00.015-0.02658.492-0.001-0.0010.0000.0000.0000.000
114B179GLU-1-0.886-0.94356.7420.0240.0240.0000.0000.0000.000
115B180MET0-0.064-0.02758.841-0.001-0.0010.0000.0000.0000.000
116B181VAL00.026-0.00460.666-0.001-0.0010.0000.0000.0000.000
117B182THR0-0.0120.00863.726-0.001-0.0010.0000.0000.0000.000
118B183LYS10.9230.96359.476-0.026-0.0260.0000.0000.0000.000
119B184LYS10.8500.92261.317-0.027-0.0270.0000.0000.0000.000
120B185GLY00.0280.02665.8390.0000.0000.0000.0000.0000.000
121B186GLY0-0.0120.00767.654-0.001-0.0010.0000.0000.0000.000
122B187LYS10.9600.96768.809-0.017-0.0170.0000.0000.0000.000
123B188ILE00.0090.02863.7620.0000.0000.0000.0000.0000.000
124B189ALA0-0.025-0.00667.530-0.001-0.0010.0000.0000.0000.000
125B190GLU-1-0.835-0.93967.4790.0150.0150.0000.0000.0000.000
126B191LYS10.9960.99367.331-0.017-0.0170.0000.0000.0000.000
127B192ASP-1-0.911-0.94964.2700.0200.0200.0000.0000.0000.000
128B193LEU0-0.034-0.01762.9330.0010.0010.0000.0000.0000.000
129B194VAL00.0190.01362.4700.0000.0000.0000.0000.0000.000
130B195THR00.005-0.00761.3750.0000.0000.0000.0000.0000.000
131B196VAL0-0.059-0.03157.3030.0010.0010.0000.0000.0000.000
132B197ILE00.0550.03457.9730.0010.0010.0000.0000.0000.000
133B198GLU-1-0.902-0.95458.4290.0160.0160.0000.0000.0000.000
134B199LEU0-0.078-0.04056.3730.0000.0000.0000.0000.0000.000
135B200LEU00.013-0.00352.9260.0010.0010.0000.0000.0000.000
136B201MET00.0100.01053.8790.0000.0000.0000.0000.0000.000
137B202ASN0-0.010-0.01054.853-0.001-0.0010.0000.0000.0000.000
138B203GLU-1-0.821-0.91349.8770.0270.0270.0000.0000.0000.000
139B204LEU0-0.021-0.01249.9990.0010.0010.0000.0000.0000.000
140B205ILE00.0470.02250.6960.0000.0000.0000.0000.0000.000
141B206LYS10.8160.90248.769-0.026-0.0260.0000.0000.0000.000
142B207LEU0-0.033-0.01645.0080.0000.0000.0000.0000.0000.000
143B208ASP-1-0.927-0.95946.4620.0170.0170.0000.0000.0000.000
144B209ALA0-0.046-0.01348.403-0.001-0.0010.0000.0000.0000.000
145B210ILE0-0.069-0.02041.8750.0000.0000.0000.0000.0000.000
146B211VAL0-0.031-0.02040.964-0.001-0.0010.0000.0000.0000.000
147B212ALA0-0.001-0.01239.1320.0020.0020.0000.0000.0000.000
148B213GLU-1-0.940-0.97135.1090.0150.0150.0000.0000.0000.000
149B214GLY00.012-0.00334.1280.0030.0030.0000.0000.0000.000
150B215ASP-1-0.831-0.92430.7610.0420.0420.0000.0000.0000.000
151B216VAL00.0430.02534.2680.0010.0010.0000.0000.0000.000
152B217LYS10.9230.96636.540-0.014-0.0140.0000.0000.0000.000
153B218LEU0-0.039-0.01935.195-0.002-0.0020.0000.0000.0000.000
154B219GLN00.0660.00235.8250.0010.0010.0000.0000.0000.000
155B220ARG10.9160.97839.202-0.019-0.0190.0000.0000.0000.000
156B221LYS10.9170.93841.935-0.020-0.0200.0000.0000.0000.000
157B222MET0-0.0140.02238.376-0.001-0.0010.0000.0000.0000.000
158B223GLN00.0700.02741.912-0.001-0.0010.0000.0000.0000.000
159B224VAL00.0130.02245.133-0.001-0.0010.0000.0000.0000.000
160B225LYS10.9390.97346.647-0.020-0.0200.0000.0000.0000.000
161B226ARG10.7970.89345.075-0.038-0.0380.0000.0000.0000.000
162B227VAL00.0160.00948.396-0.001-0.0010.0000.0000.0000.000
163B228GLN0-0.003-0.02651.1720.0000.0000.0000.0000.0000.000
164B229ASN00.0370.02849.763-0.002-0.0020.0000.0000.0000.000
165B230TYR0-0.010-0.00449.7410.0000.0000.0000.0000.0000.000
166B231VAL00.0270.00954.4600.0000.0000.0000.0000.0000.000
167B232GLU-1-0.897-0.92955.7890.0180.0180.0000.0000.0000.000
168B233THR0-0.039-0.01556.2680.0000.0000.0000.0000.0000.000
169B234LEU0-0.059-0.03358.1790.0000.0000.0000.0000.0000.000
170B235ASP-1-0.874-0.93860.7180.0160.0160.0000.0000.0000.000
171B236ALA0-0.028-0.01361.791-0.001-0.0010.0000.0000.0000.000
172B237LEU0-0.060-0.04061.3750.0000.0000.0000.0000.0000.000
173B238LYS10.9600.98464.650-0.015-0.0150.0000.0000.0000.000
174B239VAL0-0.0030.00266.623-0.001-0.0010.0000.0000.0000.000
175B240LYS10.8860.94965.593-0.018-0.0180.0000.0000.0000.000
176B241ASN0-0.040-0.02167.9480.0000.0000.0000.0000.0000.000
177B242SER0-0.048-0.00470.912-0.001-0.0010.0000.0000.0000.000