FMODB ID: JMK49
Calculation Name: 1L2Y-A-MD58-13900ps
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-13
Reference:
Modeling method
Optimization | BaseStructure_original |
---|---|
Restraint | BaseStructure_original |
Protonation | BaseStructure_original |
Complement | No |
Water | No |
Procedure | Manual calculation |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 10 |
LigandCharge | |
Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
FMO2-HF: Electronic energy | -22830.485211 |
---|---|
FMO2-HF: Nuclear repulsion | 18228.301734 |
FMO2-HF: Total energy | -4602.183478 |
FMO2-MP2: Total energy | -4615.599829 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-52.087 | -54.854 | 27.047 | -11.381 | -12.897 | -0.058 |
Interaction energy analysis for fragmet #1(:1:GLN )
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | 3 | GLN | 0 | 0.020 | 0.003 | 1.943 | -10.114 | -11.735 | 14.268 | -5.747 | -6.899 | -0.006 | |
4 | 4 | GLN | 0 | -0.019 | 0.005 | 1.789 | -6.799 | -9.419 | 12.720 | -5.011 | -5.089 | -0.049 | |
5 | 5 | GLN | 0 | 0.024 | -0.003 | 5.271 | 0.356 | 0.378 | -0.001 | -0.001 | -0.020 | 0.000 | |
6 | 6 | GLN | 0 | 0.040 | 0.017 | 6.874 | 1.798 | 1.798 | 0.000 | 0.000 | 0.000 | 0.000 | |
7 | 7 | GLN | 0 | -0.046 | 0.002 | 3.210 | -15.149 | -13.798 | 0.061 | -0.622 | -0.790 | -0.003 | |
8 | 8 | GLN | 0 | -0.037 | -0.029 | 4.642 | 1.524 | 1.625 | -0.001 | 0.000 | -0.099 | 0.000 | |
9 | 9 | GLN | 0 | -0.018 | -0.013 | 6.662 | -2.009 | -2.009 | 0.000 | 0.000 | 0.000 | 0.000 | |
10 | 10 | GLN | -1 | -0.892 | -0.926 | 10.057 | -21.694 | -21.694 | 0.000 | 0.000 | 0.000 | 0.000 |