FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: JQ589

Calculation Name: 1UT9-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1UT9

Chain ID: A

ChEMBL ID:

UniProt ID: Q6RSN8

Base Structure: X-ray

Registration Date: 2023-09-24

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 605
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -14597727.00661
FMO2-HF: Nuclear repulsion 14357897.745112
FMO2-HF: Total energy -239829.261498
FMO2-MP2: Total energy -240530.872637


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:208:ILE)


Summations of interaction energy for fragment #1(A:208:ILE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-1.9450.8090.269-1.192-1.832-0.005
Interaction energy analysis for fragmet #1(A:208:ILE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.029 / q_NPA : -0.031
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A210PRO00.0320.0092.929-3.285-0.9380.262-1.138-1.471-0.005
4A211GLN0-0.0020.0174.7160.3580.475-0.001-0.005-0.1120.000
5A212PRO0-0.0090.0146.9610.0180.0180.0000.0000.0000.000
6A213ASP-1-0.752-0.83010.480-0.493-0.4930.0000.0000.0000.000
7A214VAL0-0.063-0.03213.3680.0370.0370.0000.0000.0000.000
8A215ARG10.8440.9199.9270.5750.5750.0000.0000.0000.000
9A216VAL00.013-0.01614.4060.0260.0260.0000.0000.0000.000
10A217ASN00.0500.02115.4330.0090.0090.0000.0000.0000.000
11A218GLN0-0.066-0.02510.1570.0930.0930.0000.0000.0000.000
12A219VAL00.0100.00715.4250.0510.0510.0000.0000.0000.000
13A220GLY0-0.009-0.01918.4150.0050.0050.0000.0000.0000.000
14A221TYR0-0.023-0.00420.288-0.011-0.0110.0000.0000.0000.000
15A222LEU00.0460.02624.5610.0080.0080.0000.0000.0000.000
16A223PRO0-0.011-0.01328.267-0.007-0.0070.0000.0000.0000.000
17A224GLU-1-0.889-0.93130.827-0.010-0.0100.0000.0000.0000.000
18A225GLY00.0520.02130.6510.0040.0040.0000.0000.0000.000
19A226LYS10.8820.94227.1710.0560.0560.0000.0000.0000.000
20A227LYS10.7200.86324.8560.0220.0220.0000.0000.0000.000
21A228VAL00.0030.00822.968-0.005-0.0050.0000.0000.0000.000
22A229ALA00.0230.03018.5630.0000.0000.0000.0000.0000.000
23A230THR0-0.025-0.03117.7050.0130.0130.0000.0000.0000.000
24A231VAL0-0.036-0.02516.703-0.027-0.0270.0000.0000.0000.000
25A232VAL00.0280.01713.1450.0240.0240.0000.0000.0000.000
26A233CYS0-0.024-0.01616.106-0.010-0.0100.0000.0000.0000.000
27A234ASN0-0.005-0.00918.1220.0150.0150.0000.0000.0000.000
28A235SER0-0.049-0.02120.7630.0170.0170.0000.0000.0000.000
29A236THR00.036-0.00123.800-0.001-0.0010.0000.0000.0000.000
30A237GLN0-0.0350.00826.9140.0080.0080.0000.0000.0000.000
31A238PRO00.0480.02726.261-0.012-0.0120.0000.0000.0000.000
32A239VAL0-0.019-0.00521.8330.0010.0010.0000.0000.0000.000
33A240LYS10.7960.89425.2740.0880.0880.0000.0000.0000.000
34A241TRP00.0260.00622.573-0.016-0.0160.0000.0000.0000.000
35A242GLN0-0.067-0.06822.9310.0100.0100.0000.0000.0000.000
36A243LEU00.0150.02621.907-0.013-0.0130.0000.0000.0000.000
37A244LYS10.8500.91521.9400.0880.0880.0000.0000.0000.000
38A245ASN00.0790.03523.0600.0020.0020.0000.0000.0000.000
39A246ALA00.0950.04221.935-0.008-0.0080.0000.0000.0000.000
40A247ALA0-0.087-0.03622.8690.0080.0080.0000.0000.0000.000
41A248GLY00.0070.00823.217-0.004-0.0040.0000.0000.0000.000
42A249VAL0-0.067-0.03624.153-0.012-0.0120.0000.0000.0000.000
43A250VAL0-0.026-0.01525.7830.0010.0010.0000.0000.0000.000
44A251VAL0-0.054-0.02926.8130.0060.0060.0000.0000.0000.000
45A252LEU00.0150.01927.5930.0030.0030.0000.0000.0000.000
46A253GLU-1-0.835-0.89727.113-0.078-0.0780.0000.0000.0000.000
47A254GLY00.0290.01827.4720.0080.0080.0000.0000.0000.000
48A255TYR0-0.027-0.01826.967-0.008-0.0080.0000.0000.0000.000
49A256THR00.008-0.00922.1990.0090.0090.0000.0000.0000.000
50A257GLU-1-0.838-0.90925.508-0.089-0.0890.0000.0000.0000.000
51A258PRO0-0.042-0.02624.935-0.010-0.0100.0000.0000.0000.000
52A259LYS10.8520.95023.7510.1190.1190.0000.0000.0000.000
53A260GLY00.0240.00324.6200.0010.0010.0000.0000.0000.000
54A261LEU0-0.049-0.01820.215-0.013-0.0130.0000.0000.0000.000
55A262ASP-1-0.750-0.84719.664-0.167-0.1670.0000.0000.0000.000
56A263LYS10.8790.92920.8010.0970.0970.0000.0000.0000.000
57A264ASP-1-0.720-0.81719.793-0.131-0.1310.0000.0000.0000.000
58A265SER0-0.032-0.03815.632-0.015-0.0150.0000.0000.0000.000
59A266GLN0-0.068-0.04516.047-0.034-0.0340.0000.0000.0000.000
60A267ASP-1-0.736-0.82314.159-0.436-0.4360.0000.0000.0000.000
61A268TYR0-0.055-0.03517.0450.0370.0370.0000.0000.0000.000
62A269VAL0-0.0110.00117.423-0.023-0.0230.0000.0000.0000.000
63A270HIS0-0.023-0.00319.9510.0270.0270.0000.0000.0000.000
64A271TRP0-0.021-0.01820.893-0.005-0.0050.0000.0000.0000.000
65A272LEU0-0.005-0.00621.011-0.001-0.0010.0000.0000.0000.000
66A273ASP-1-0.788-0.85923.483-0.059-0.0590.0000.0000.0000.000
67A274PHE0-0.026-0.02822.1780.0000.0000.0000.0000.0000.000
68A275SER00.034-0.02327.1960.0080.0080.0000.0000.0000.000
69A276ASP-1-0.925-0.94429.349-0.029-0.0290.0000.0000.0000.000
70A277PHE0-0.074-0.04427.3000.0040.0040.0000.0000.0000.000
71A278ALA00.0610.03228.9660.0010.0010.0000.0000.0000.000
72A279THR0-0.089-0.04429.9430.0060.0060.0000.0000.0000.000
73A280GLU-1-0.743-0.84928.9850.0330.0330.0000.0000.0000.000
74A281GLY0-0.064-0.03627.394-0.002-0.0020.0000.0000.0000.000
75A282ILE0-0.034-0.01622.4220.0010.0010.0000.0000.0000.000
76A283GLY00.002-0.00519.883-0.004-0.0040.0000.0000.0000.000
77A284TYR0-0.091-0.05420.864-0.011-0.0110.0000.0000.0000.000
78A285TYR0-0.045-0.03617.2470.0120.0120.0000.0000.0000.000
79A286PHE00.0390.00318.2190.0040.0040.0000.0000.0000.000
80A287GLU-1-0.819-0.87717.887-0.128-0.1280.0000.0000.0000.000
81A288LEU00.0250.01417.4510.0200.0200.0000.0000.0000.000
82A289PRO0-0.021-0.00920.567-0.015-0.0150.0000.0000.0000.000
83A290THR0-0.027-0.01922.7910.0070.0070.0000.0000.0000.000
84A291VAL0-0.025-0.00517.7020.0030.0030.0000.0000.0000.000
85A292ASN0-0.041-0.02518.988-0.015-0.0150.0000.0000.0000.000
86A293SER0-0.009-0.03314.134-0.012-0.0120.0000.0000.0000.000
87A294PRO0-0.034-0.01610.9470.0470.0470.0000.0000.0000.000
88A295THR0-0.011-0.0378.993-0.060-0.0600.0000.0000.0000.000
89A296ASN0-0.0060.03911.9820.0120.0120.0000.0000.0000.000
90A297TYR0-0.044-0.04310.7590.0280.0280.0000.0000.0000.000
91A298SER0-0.019-0.01014.016-0.040-0.0400.0000.0000.0000.000
92A299HIS0-0.011-0.0228.3690.0760.0760.0000.0000.0000.000
93A300PRO0-0.027-0.00213.496-0.008-0.0080.0000.0000.0000.000
94A301PHE00.0110.01416.2320.0030.0030.0000.0000.0000.000
95A302ASP-1-0.762-0.86718.9950.0920.0920.0000.0000.0000.000
96A303ILE0-0.040-0.01122.492-0.011-0.0110.0000.0000.0000.000
97A304ARG10.7990.86822.004-0.094-0.0940.0000.0000.0000.000
98A305LYS10.8770.90727.770-0.035-0.0350.0000.0000.0000.000
99A306ASP-1-0.822-0.90126.8890.0830.0830.0000.0000.0000.000
100A307ILE0-0.052-0.00522.4140.0110.0110.0000.0000.0000.000
101A308TYR00.0570.00322.6110.0090.0090.0000.0000.0000.000
102A309THR0-0.058-0.04425.8430.0030.0030.0000.0000.0000.000
103A310GLN0-0.051-0.03224.387-0.009-0.0090.0000.0000.0000.000
104A311MET00.0170.02120.388-0.005-0.0050.0000.0000.0000.000
105A312LYS10.7990.90324.245-0.068-0.0680.0000.0000.0000.000
106A313TYR0-0.015-0.00927.487-0.006-0.0060.0000.0000.0000.000
107A314ASP-1-0.806-0.87322.7410.1570.1570.0000.0000.0000.000
108A315ALA0-0.0060.00224.3860.0030.0030.0000.0000.0000.000
109A316LEU00.005-0.00625.248-0.007-0.0070.0000.0000.0000.000
110A317ALA00.0120.00526.098-0.003-0.0030.0000.0000.0000.000
111A318PHE0-0.008-0.00823.2220.0040.0040.0000.0000.0000.000
112A319PHE0-0.004-0.00826.1280.0000.0000.0000.0000.0000.000
113A320TYR00.0880.04629.7110.0010.0010.0000.0000.0000.000
114A321HIS0-0.005-0.00925.800-0.004-0.0040.0000.0000.0000.000
115A322LYS10.8010.91024.199-0.107-0.1070.0000.0000.0000.000
116A323ARG10.7040.82728.986-0.081-0.0810.0000.0000.0000.000
117A324SER0-0.035-0.00332.8500.0040.0040.0000.0000.0000.000
118A325GLY0-0.019-0.03334.407-0.003-0.0030.0000.0000.0000.000
119A326ILE0-0.015-0.00334.668-0.003-0.0030.0000.0000.0000.000
120A327PRO0-0.027-0.01834.2980.0040.0040.0000.0000.0000.000
121A328ILE0-0.0190.01628.491-0.001-0.0010.0000.0000.0000.000
122A329GLU-1-0.896-0.93331.5600.0970.0970.0000.0000.0000.000
123A330MET0-0.0390.00628.4070.0070.0070.0000.0000.0000.000
124A331PRO00.005-0.00832.037-0.006-0.0060.0000.0000.0000.000
125A332TYR00.0500.02230.6390.0090.0090.0000.0000.0000.000
126A333ALA00.0080.00627.8470.0030.0030.0000.0000.0000.000
127A334GLY00.007-0.00526.1800.0130.0130.0000.0000.0000.000
128A335GLY0-0.009-0.02424.7450.0130.0130.0000.0000.0000.000
129A336GLU-1-0.937-0.96325.8020.1740.1740.0000.0000.0000.000
130A337GLN0-0.015-0.00420.908-0.019-0.0190.0000.0000.0000.000
131A338TRP0-0.072-0.04719.1410.0010.0010.0000.0000.0000.000
132A339THR0-0.044-0.03724.915-0.014-0.0140.0000.0000.0000.000
133A340ARG10.7770.87528.131-0.103-0.1030.0000.0000.0000.000
134A341PRO00.0190.00330.328-0.007-0.0070.0000.0000.0000.000
135A342ALA00.0020.01132.8370.0020.0020.0000.0000.0000.000
136A343GLY00.0140.00833.2130.0020.0020.0000.0000.0000.000
137A344HIS00.0320.03331.908-0.002-0.0020.0000.0000.0000.000
138A345ILE00.0270.02336.600-0.004-0.0040.0000.0000.0000.000
139A346GLY0-0.058-0.02639.843-0.002-0.0020.0000.0000.0000.000
140A347ILE0-0.034-0.00839.461-0.002-0.0020.0000.0000.0000.000
141A348GLU-1-0.802-0.88238.8680.0550.0550.0000.0000.0000.000
142A349PRO0-0.002-0.01435.0560.0020.0020.0000.0000.0000.000
143A350ASN0-0.048-0.02533.803-0.002-0.0020.0000.0000.0000.000
144A351LYS10.8030.89337.426-0.054-0.0540.0000.0000.0000.000
145A352GLY00.0160.00639.560-0.004-0.0040.0000.0000.0000.000
146A353ASP-1-0.778-0.87837.2240.0560.0560.0000.0000.0000.000
147A354THR00.023-0.00340.354-0.003-0.0030.0000.0000.0000.000
148A355ASN0-0.084-0.04543.702-0.004-0.0040.0000.0000.0000.000
149A356VAL00.0320.04740.7050.0000.0000.0000.0000.0000.000
150A357PRO00.0040.00243.327-0.002-0.0020.0000.0000.0000.000
151A358THR00.011-0.01043.8700.0010.0010.0000.0000.0000.000
152A359TRP0-0.067-0.04136.3970.0010.0010.0000.0000.0000.000
153A360PRO0-0.0130.00142.058-0.002-0.0020.0000.0000.0000.000
154A361GLN00.022-0.00444.411-0.002-0.0020.0000.0000.0000.000
155A362ASP-1-0.938-0.96345.4360.0140.0140.0000.0000.0000.000
156A363ASP-1-0.812-0.86539.4690.0160.0160.0000.0000.0000.000
157A364GLU-1-0.894-0.92139.2250.0020.0020.0000.0000.0000.000
158A365TYR0-0.026-0.04337.219-0.002-0.0020.0000.0000.0000.000
159A366ALA0-0.0130.00440.0420.0020.0020.0000.0000.0000.000
160A367GLY00.0550.03942.5110.0010.0010.0000.0000.0000.000
161A368ILE0-0.054-0.03143.343-0.001-0.0010.0000.0000.0000.000
162A369PRO0-0.006-0.01546.7060.0010.0010.0000.0000.0000.000
163A370GLN0-0.013-0.01444.0570.0010.0010.0000.0000.0000.000
164A371LYS10.8430.91249.451-0.012-0.0120.0000.0000.0000.000
165A372ASN0-0.0110.00650.3440.0020.0020.0000.0000.0000.000
166A373TYR0-0.025-0.01948.059-0.001-0.0010.0000.0000.0000.000
167A374THR0-0.018-0.01547.4520.0000.0000.0000.0000.0000.000
168A375LYS10.8040.90245.405-0.026-0.0260.0000.0000.0000.000
169A376ASP-1-0.805-0.86744.5550.0440.0440.0000.0000.0000.000
170A377VAL00.013-0.02040.251-0.002-0.0020.0000.0000.0000.000
171A378THR0-0.043-0.02939.8350.0030.0030.0000.0000.0000.000
172A379GLY00.0460.03438.487-0.003-0.0030.0000.0000.0000.000
173A380GLY00.0730.02736.6510.0000.0000.0000.0000.0000.000
174A381TRP0-0.051-0.04431.1280.0030.0030.0000.0000.0000.000
175A382TYR0-0.088-0.06628.785-0.004-0.0040.0000.0000.0000.000
176A383ASP-1-0.811-0.87728.6650.0450.0450.0000.0000.0000.000
177A384ALA00.0840.05024.8170.0000.0000.0000.0000.0000.000
178A385GLY00.0410.03922.2840.0120.0120.0000.0000.0000.000
179A386ASP-1-0.827-0.90823.1030.0680.0680.0000.0000.0000.000
180A387HIS0-0.002-0.00926.331-0.001-0.0010.0000.0000.0000.000
181A388GLY00.0000.00529.794-0.003-0.0030.0000.0000.0000.000
182A389LYS10.7980.89331.445-0.048-0.0480.0000.0000.0000.000
183A390TYR0-0.052-0.05629.922-0.006-0.0060.0000.0000.0000.000
184A391VAL00.0260.02834.9250.0010.0010.0000.0000.0000.000
185A392VAL0-0.022-0.00134.852-0.001-0.0010.0000.0000.0000.000
186A393ASN0-0.008-0.03128.638-0.003-0.0030.0000.0000.0000.000
187A394GLY00.0800.03632.5750.0020.0020.0000.0000.0000.000
188A395GLY0-0.013-0.00233.9580.0010.0010.0000.0000.0000.000
189A396ILE00.0360.01632.0170.0000.0000.0000.0000.0000.000
190A397ALA0-0.0140.01131.1060.0000.0000.0000.0000.0000.000
191A398VAL00.0260.00432.4980.0020.0020.0000.0000.0000.000
192A399TRP0-0.008-0.01335.4210.0000.0000.0000.0000.0000.000
193A400THR0-0.053-0.03231.067-0.002-0.0020.0000.0000.0000.000
194A401LEU00.014-0.00531.0360.0000.0000.0000.0000.0000.000
195A402MET0-0.063-0.01234.6880.0000.0000.0000.0000.0000.000
196A403ASN00.0490.05936.500-0.002-0.0020.0000.0000.0000.000
197A404MET0-0.0200.01731.503-0.001-0.0010.0000.0000.0000.000
198A405TYR0-0.014-0.03736.235-0.001-0.0010.0000.0000.0000.000
199A406GLU-1-0.812-0.87839.0450.0170.0170.0000.0000.0000.000
200A407ARG10.7760.86036.489-0.019-0.0190.0000.0000.0000.000
201A408ALA00.0150.01238.473-0.001-0.0010.0000.0000.0000.000
202A409LYS10.9210.96440.375-0.027-0.0270.0000.0000.0000.000
203A410ILE0-0.048-0.02043.814-0.001-0.0010.0000.0000.0000.000
204A411ARG10.8070.88139.606-0.014-0.0140.0000.0000.0000.000
205A412GLY0-0.034-0.00443.8030.0000.0000.0000.0000.0000.000
206A413LEU0-0.029-0.02138.9870.0010.0010.0000.0000.0000.000
207A414ASP-1-0.815-0.89840.4040.0330.0330.0000.0000.0000.000
208A415ASN0-0.016-0.01242.1300.0020.0020.0000.0000.0000.000
209A416TRP0-0.027-0.02732.8960.0040.0040.0000.0000.0000.000
210A417GLY0-0.001-0.00634.9440.0000.0000.0000.0000.0000.000
211A418PRO0-0.015-0.00832.6570.0020.0020.0000.0000.0000.000
212A419TYR0-0.042-0.02634.6910.0000.0000.0000.0000.0000.000
213A420ARG10.8890.94238.390-0.059-0.0590.0000.0000.0000.000
214A421ASP-1-0.800-0.88439.5300.0530.0530.0000.0000.0000.000
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