FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: JQQ19

Calculation Name: 2HF2-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2HF2

Chain ID: A

ChEMBL ID:

UniProt ID: P75792

Base Structure: X-ray

Registration Date: 2023-09-21

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 270
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3647199.71738
FMO2-HF: Nuclear repulsion 3541162.92154
FMO2-HF: Total energy -106036.795841
FMO2-MP2: Total energy -106347.917858


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:LEU)


Summations of interaction energy for fragment #1(A:1:LEU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-7.721-2.6091.514-2.274-4.35-0.012
Interaction energy analysis for fragmet #1(A:1:LEU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.044 / q_NPA : 0.017
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3VAL00.0480.0203.810-1.1340.301-0.020-0.620-0.7950.002
4A4LYS10.9290.9606.348-1.511-1.5110.0000.0000.0000.000
5A5VAL00.0080.0138.565-0.035-0.0350.0000.0000.0000.000
6A6ILE00.0110.00910.279-0.124-0.1240.0000.0000.0000.000
7A7VAL0-0.032-0.02012.8750.0520.0520.0000.0000.0000.000
8A8THR0-0.036-0.02515.349-0.051-0.0510.0000.0000.0000.000
9A9ASP-1-0.762-0.86818.150-0.048-0.0480.0000.0000.0000.000
10A10MET0-0.047-0.04321.289-0.003-0.0030.0000.0000.0000.000
11A11ASP-1-0.824-0.92824.535-0.050-0.0500.0000.0000.0000.000
12A12GLY00.0390.03825.586-0.004-0.0040.0000.0000.0000.000
13A13THR0-0.024-0.02519.967-0.019-0.0190.0000.0000.0000.000
14A14PHE0-0.029-0.02720.639-0.005-0.0050.0000.0000.0000.000
15A15LEU0-0.080-0.01823.0290.0060.0060.0000.0000.0000.000
16A16ASN00.0480.03726.809-0.003-0.0030.0000.0000.0000.000
17A17ASP-1-0.809-0.91828.869-0.068-0.0680.0000.0000.0000.000
18A18ALA0-0.100-0.04231.9940.0050.0050.0000.0000.0000.000
19A19LYS10.8350.92530.7700.0550.0550.0000.0000.0000.000
20A20THR00.0230.00530.5790.0060.0060.0000.0000.0000.000
21A21TYR00.018-0.00725.474-0.006-0.0060.0000.0000.0000.000
22A22ASN0-0.018-0.01126.1590.0150.0150.0000.0000.0000.000
23A23GLN00.011-0.00326.260-0.002-0.0020.0000.0000.0000.000
24A24PRO00.0210.00627.0640.0040.0040.0000.0000.0000.000
25A25ARG10.8530.93420.8690.1210.1210.0000.0000.0000.000
26A26PHE00.0490.01819.5450.0010.0010.0000.0000.0000.000
27A27MET00.0110.02222.4160.0120.0120.0000.0000.0000.000
28A28ALA00.0040.00123.7510.0130.0130.0000.0000.0000.000
29A29GLN0-0.032-0.03919.0720.0160.0160.0000.0000.0000.000
30A30TYR0-0.048-0.04218.3740.0140.0140.0000.0000.0000.000
31A31GLN0-0.056-0.03819.7260.0240.0240.0000.0000.0000.000
32A32GLU-1-0.912-0.96317.1450.0940.0940.0000.0000.0000.000
33A33LEU00.0000.00213.9010.0230.0230.0000.0000.0000.000
34A34LYS10.8950.96115.632-0.049-0.0490.0000.0000.0000.000
35A35LYS10.9120.96117.968-0.067-0.0670.0000.0000.0000.000
36A36ARG10.8910.9579.410-0.020-0.0200.0000.0000.0000.000
37A37GLY0-0.026-0.00113.0770.1060.1060.0000.0000.0000.000
38A38ILE0-0.100-0.04410.7060.0770.0770.0000.0000.0000.000
39A39LYS10.9420.98112.711-0.360-0.3600.0000.0000.0000.000
40A40PHE00.0380.01313.990-0.035-0.0350.0000.0000.0000.000
41A41VAL0-0.010-0.01415.4230.0200.0200.0000.0000.0000.000
42A42VAL00.0500.03817.885-0.029-0.0290.0000.0000.0000.000
43A43ALA0-0.028-0.02019.1420.0150.0150.0000.0000.0000.000
44A44SER00.0120.00421.143-0.014-0.0140.0000.0000.0000.000
45A45ASN00.0360.00424.5660.0120.0120.0000.0000.0000.000
46A46ASN0-0.041-0.00727.6900.0040.0040.0000.0000.0000.000
47A47GLN00.0460.00828.9900.0060.0060.0000.0000.0000.000
48A48TYR00.0320.00527.098-0.003-0.0030.0000.0000.0000.000
49A49TYR00.038-0.00429.9190.0010.0010.0000.0000.0000.000
50A50GLN00.0410.04431.247-0.003-0.0030.0000.0000.0000.000
51A51LEU0-0.0130.00625.182-0.003-0.0030.0000.0000.0000.000
52A52ILE00.003-0.01027.648-0.002-0.0020.0000.0000.0000.000
53A53SER0-0.067-0.01629.3850.0010.0010.0000.0000.0000.000
54A54PHE00.0360.01928.264-0.001-0.0010.0000.0000.0000.000
55A55PHE0-0.029-0.01223.946-0.002-0.0020.0000.0000.0000.000
56A56PRO00.0250.01828.3310.0090.0090.0000.0000.0000.000
57A57GLU-1-0.889-0.95529.3320.0310.0310.0000.0000.0000.000
58A58LEU0-0.037-0.03823.2450.0060.0060.0000.0000.0000.000
59A59LYS10.9060.97725.040-0.029-0.0290.0000.0000.0000.000
60A60ASP-1-0.882-0.95126.4890.0620.0620.0000.0000.0000.000
61A61GLU-1-0.885-0.92521.3830.1430.1430.0000.0000.0000.000
62A62ILE0-0.046-0.01920.3180.0160.0160.0000.0000.0000.000
63A63SER0-0.057-0.03018.7890.0130.0130.0000.0000.0000.000
64A64PHE0-0.029-0.02220.851-0.016-0.0160.0000.0000.0000.000
65A65VAL0-0.038-0.00819.2950.0100.0100.0000.0000.0000.000
66A66ALA00.0310.00222.454-0.013-0.0130.0000.0000.0000.000
67A67GLU-1-0.860-0.95126.0790.0050.0050.0000.0000.0000.000
68A68ASN00.006-0.00425.117-0.002-0.0020.0000.0000.0000.000
69A69GLY0-0.0060.00723.7970.0000.0000.0000.0000.0000.000
70A70ALA0-0.036-0.01024.5940.0090.0090.0000.0000.0000.000
71A71LEU0-0.0010.00126.8890.0070.0070.0000.0000.0000.000
72A72VAL0-0.0080.00221.163-0.004-0.0040.0000.0000.0000.000
73A73TYR00.0110.00723.6050.0050.0050.0000.0000.0000.000
74A74GLU-1-0.860-0.94519.4310.1860.1860.0000.0000.0000.000
75A75HIS00.0090.01120.721-0.011-0.0110.0000.0000.0000.000
76A76GLY00.0630.04823.955-0.003-0.0030.0000.0000.0000.000
77A77LYS10.8730.94126.054-0.112-0.1120.0000.0000.0000.000
78A78GLN00.019-0.00525.8870.0060.0060.0000.0000.0000.000
79A79LEU0-0.047-0.01020.5120.0050.0050.0000.0000.0000.000
80A80PHE0-0.038-0.04524.2830.0050.0050.0000.0000.0000.000
81A81HIS10.8350.92226.046-0.054-0.0540.0000.0000.0000.000
82A82GLY00.0220.02129.0260.0020.0020.0000.0000.0000.000
83A83GLU-1-0.900-0.96830.6000.0400.0400.0000.0000.0000.000
84A84LEU00.0050.02534.3080.0000.0000.0000.0000.0000.000
85A85THR00.0250.00337.3730.0010.0010.0000.0000.0000.000
86A86ARG10.8710.89639.956-0.025-0.0250.0000.0000.0000.000
87A87HIS0-0.029-0.02443.109-0.001-0.0010.0000.0000.0000.000
88A88GLU-1-0.809-0.90638.3020.0170.0170.0000.0000.0000.000
89A89SER00.0460.02040.916-0.002-0.0020.0000.0000.0000.000
90A90ARG10.9070.98042.973-0.017-0.0170.0000.0000.0000.000
91A91ILE0-0.032-0.01644.157-0.001-0.0010.0000.0000.0000.000
92A92VAL00.0170.01240.870-0.002-0.0020.0000.0000.0000.000
93A93ILE00.011-0.00344.320-0.002-0.0020.0000.0000.0000.000
94A94GLY00.0080.00546.927-0.001-0.0010.0000.0000.0000.000
95A95GLU-1-0.900-0.97246.406-0.002-0.0020.0000.0000.0000.000
96A96LEU0-0.015-0.00143.819-0.002-0.0020.0000.0000.0000.000
97A97LEU00.0070.01448.197-0.001-0.0010.0000.0000.0000.000
98A98LYS10.8360.91451.0130.0010.0010.0000.0000.0000.000
99A99ASP-1-0.927-0.96351.520-0.004-0.0040.0000.0000.0000.000
100A100LYS10.9450.98350.7190.0090.0090.0000.0000.0000.000
101A101GLN0-0.038-0.01446.661-0.001-0.0010.0000.0000.0000.000
102A102LEU0-0.0220.02448.7590.0010.0010.0000.0000.0000.000
103A103ASN0-0.001-0.01848.8970.0000.0000.0000.0000.0000.000
104A104PHE00.003-0.00144.313-0.001-0.0010.0000.0000.0000.000
105A105VAL0-0.012-0.00341.0630.0010.0010.0000.0000.0000.000
106A106ALA0-0.013-0.00241.017-0.001-0.0010.0000.0000.0000.000
107A107CYS0-0.030-0.02136.3750.0000.0000.0000.0000.0000.000
108A108GLY00.0520.01937.2860.0010.0010.0000.0000.0000.000
109A109LEU0-0.039-0.01832.7460.0000.0000.0000.0000.0000.000
110A110GLN0-0.037-0.02235.5540.0040.0040.0000.0000.0000.000
111A111SER0-0.113-0.07038.283-0.001-0.0010.0000.0000.0000.000
112A112ALA00.0300.04839.5390.0000.0000.0000.0000.0000.000
113A113TYR0-0.069-0.08940.8480.0010.0010.0000.0000.0000.000
114A114VAL00.0100.01044.237-0.001-0.0010.0000.0000.0000.000
115A115SER00.0400.02447.1450.0010.0010.0000.0000.0000.000
116A116GLU-1-0.924-0.98850.6070.0080.0080.0000.0000.0000.000
117A117ASN0-0.0030.00253.3740.0000.0000.0000.0000.0000.000
118A118ALA0-0.033-0.00151.225-0.001-0.0010.0000.0000.0000.000
119A119PRO00.0310.00852.9240.0000.0000.0000.0000.0000.000
120A120GLU-1-0.853-0.93152.8930.0010.0010.0000.0000.0000.000
121A121ALA0-0.034-0.01553.1500.0000.0000.0000.0000.0000.000
122A122PHE00.0070.00145.910-0.001-0.0010.0000.0000.0000.000
123A123VAL00.0530.01948.4650.0000.0000.0000.0000.0000.000
124A124ALA0-0.013-0.00648.4510.0010.0010.0000.0000.0000.000
125A125LEU0-0.030-0.01446.0570.0000.0000.0000.0000.0000.000
126A126MET00.0230.01543.4000.0000.0000.0000.0000.0000.000
127A127ALA0-0.005-0.00843.4520.0010.0010.0000.0000.0000.000
128A128LYS10.8810.94643.8990.0070.0070.0000.0000.0000.000
129A129HIS0-0.049-0.01840.025-0.003-0.0030.0000.0000.0000.000
130A130TYR00.0100.00437.8560.0000.0000.0000.0000.0000.000
131A131HIS00.0120.00937.216-0.002-0.0020.0000.0000.0000.000
132A132ARG10.9480.97639.328-0.015-0.0150.0000.0000.0000.000
133A133LEU00.0230.01941.4240.0000.0000.0000.0000.0000.000
134A134LYS10.8760.93743.712-0.020-0.0200.0000.0000.0000.000
135A135PRO00.0400.02046.6440.0000.0000.0000.0000.0000.000
136A136VAL0-0.051-0.01847.2790.0010.0010.0000.0000.0000.000
137A137LYS10.9750.99350.425-0.015-0.0150.0000.0000.0000.000
138A138ASP-1-0.841-0.93551.7450.0110.0110.0000.0000.0000.000
139A139TYR00.026-0.00445.7680.0010.0010.0000.0000.0000.000
140A140GLN0-0.039-0.02246.6650.0000.0000.0000.0000.0000.000
141A141GLU-1-0.882-0.93548.6960.0160.0160.0000.0000.0000.000
142A142ILE0-0.064-0.01043.2090.0010.0010.0000.0000.0000.000
143A143ASP-1-0.949-0.97143.8190.0320.0320.0000.0000.0000.000
144A144ASP-1-0.766-0.85138.6080.0280.0280.0000.0000.0000.000
145A145VAL0-0.054-0.00535.896-0.001-0.0010.0000.0000.0000.000
146A146LEU00.004-0.01137.629-0.001-0.0010.0000.0000.0000.000
147A147PHE0-0.014-0.01732.4750.0010.0010.0000.0000.0000.000
148A148LYS10.9290.96532.7610.0050.0050.0000.0000.0000.000
149A149PHE00.0190.01136.1960.0020.0020.0000.0000.0000.000
150A150SER0-0.0050.01538.699-0.002-0.0020.0000.0000.0000.000
151A151LEU00.007-0.01540.4900.0020.0020.0000.0000.0000.000
152A152ASN00.0050.00343.535-0.003-0.0030.0000.0000.0000.000
153A153LEU0-0.013-0.00445.2700.0010.0010.0000.0000.0000.000
154A154PRO00.002-0.00547.891-0.001-0.0010.0000.0000.0000.000
155A155ASP-1-0.863-0.95345.878-0.021-0.0210.0000.0000.0000.000
156A156GLU-1-0.902-0.94547.278-0.018-0.0180.0000.0000.0000.000
157A157GLN0-0.081-0.04849.7650.0010.0010.0000.0000.0000.000
158A158ILE00.0000.01342.9220.0010.0010.0000.0000.0000.000
159A159PRO0-0.0010.00044.6050.0010.0010.0000.0000.0000.000
160A160LEU00.0500.02245.6730.0010.0010.0000.0000.0000.000
161A161VAL0-0.018-0.00645.2400.0010.0010.0000.0000.0000.000
162A162ILE00.0030.00140.0800.0010.0010.0000.0000.0000.000
163A163ASP-1-0.892-0.93742.947-0.018-0.0180.0000.0000.0000.000
164A164LYS10.8680.93544.8010.0060.0060.0000.0000.0000.000
165A165LEU0-0.012-0.03142.7500.0020.0020.0000.0000.0000.000
166A166HIS0-0.0110.00437.4380.0010.0010.0000.0000.0000.000
167A167VAL0-0.0210.00241.1920.0010.0010.0000.0000.0000.000
168A168ALA0-0.066-0.03643.7960.0010.0010.0000.0000.0000.000
169A169LEU0-0.016-0.00240.9570.0020.0020.0000.0000.0000.000
170A170ASP-1-0.872-0.93238.812-0.003-0.0030.0000.0000.0000.000
171A171GLY0-0.047-0.01836.4870.0020.0020.0000.0000.0000.000
172A172ILE0-0.045-0.01037.1230.0030.0030.0000.0000.0000.000
173A173MET0-0.088-0.05735.8500.0010.0010.0000.0000.0000.000
174A174LYS10.9580.99831.8240.0240.0240.0000.0000.0000.000
175A175PRO00.0080.00936.2570.0000.0000.0000.0000.0000.000
176A176VAL0-0.043-0.02833.352-0.003-0.0030.0000.0000.0000.000
177A177THR00.0430.01936.7370.0020.0020.0000.0000.0000.000
178A178SER0-0.0160.00636.212-0.003-0.0030.0000.0000.0000.000
179A179GLY0-0.011-0.01537.450-0.002-0.0020.0000.0000.0000.000
180A180PHE00.002-0.00639.6120.0010.0010.0000.0000.0000.000
181A181GLY00.0570.03143.1350.0010.0010.0000.0000.0000.000
182A182PHE0-0.006-0.00740.7590.0020.0020.0000.0000.0000.000
183A183ILE0-0.048-0.02040.049-0.002-0.0020.0000.0000.0000.000
184A184ASP-1-0.899-0.95035.436-0.012-0.0120.0000.0000.0000.000
185A185LEU0-0.040-0.02337.645-0.001-0.0010.0000.0000.0000.000
186A186ILE00.0330.00431.1090.0020.0020.0000.0000.0000.000
187A187ILE00.0690.03431.1390.0000.0000.0000.0000.0000.000
188A188PRO0-0.002-0.01230.725-0.001-0.0010.0000.0000.0000.000
189A189GLY0-0.0210.00727.804-0.005-0.0050.0000.0000.0000.000
190A190LEU0-0.096-0.03625.7730.0060.0060.0000.0000.0000.000
191A191HIS00.0830.04022.806-0.009-0.0090.0000.0000.0000.000
192A192LYS10.8970.93920.3990.0760.0760.0000.0000.0000.000
193A193ALA00.0270.02117.5550.0100.0100.0000.0000.0000.000
194A194ASN00.002-0.01517.6110.0160.0160.0000.0000.0000.000
195A195GLY00.0370.02119.7960.0190.0190.0000.0000.0000.000
196A196ILE00.0390.00714.2450.0210.0210.0000.0000.0000.000
197A197SER0-0.021-0.01514.9710.0310.0310.0000.0000.0000.000
198A198ARG10.8920.96016.056-0.023-0.0230.0000.0000.0000.000
199A199LEU00.0190.01516.2990.0210.0210.0000.0000.0000.000
200A200LEU0-0.021-0.00510.7820.0330.0330.0000.0000.0000.000
201A201LYS10.9690.99013.428-0.092-0.0920.0000.0000.0000.000
202A202ARG10.9030.96315.729-0.206-0.2060.0000.0000.0000.000
203A203TRP0-0.065-0.04513.1890.0130.0130.0000.0000.0000.000
204A204ASP-1-0.907-0.93213.2470.4870.4870.0000.0000.0000.000
205A205LEU0-0.074-0.0378.4240.1750.1750.0000.0000.0000.000
206A206SER00.0290.0186.501-0.260-0.2600.0000.0000.0000.000
207A207PRO00.0650.0127.314-0.006-0.0060.0000.0000.0000.000
208A208GLN0-0.003-0.0263.633-0.601-0.3110.001-0.030-0.2610.000
209A209ASN0-0.058-0.0253.248-2.661-1.7190.021-0.440-0.524-0.002
210A210VAL00.0210.0184.9270.0570.089-0.001-0.002-0.0280.000
211A211VAL00.0080.0147.957-0.215-0.2150.0000.0000.0000.000
212A212ALA0-0.019-0.0049.7940.1120.1120.0000.0000.0000.000
213A213ILE0-0.004-0.00313.123-0.052-0.0520.0000.0000.0000.000
214A214GLY00.0370.00816.0550.0320.0320.0000.0000.0000.000
215A215ASP-1-0.842-0.93119.233-0.123-0.1230.0000.0000.0000.000
216A216SER00.0640.04222.3730.0050.0050.0000.0000.0000.000
217A217GLY00.028-0.00123.266-0.006-0.0060.0000.0000.0000.000
218A218ASN0-0.034-0.02824.0730.0060.0060.0000.0000.0000.000
219A219ASP-1-0.737-0.87119.608-0.095-0.0950.0000.0000.0000.000
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