FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

tag_button

FMODB ID: K2G13

Calculation Name: 3E7Q-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 3E7Q

Chain ID: A

ChEMBL ID:

UniProt ID: Q9HUI1

Base Structure: X-ray

Registration Date: 2023-09-27

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 208
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2146056.510886
FMO2-HF: Nuclear repulsion 2067569.374736
FMO2-HF: Total energy -78487.136151
FMO2-MP2: Total energy -78719.427395


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:2:ASN)


Summations of interaction energy for fragment #1(A:2:ASN)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-13.281-7.971.212-2.509-4.0130.008
Interaction energy analysis for fragmet #1(A:2:ASN)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.026 / q_NPA : -0.005
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A4GLU-1-0.942-0.9773.240-4.164-2.187-0.006-0.806-1.1650.001
4A5VAL00.0110.0092.400-0.4770.3251.070-0.634-1.2370.000
5A6ARG10.9170.9923.269-12.498-9.9660.148-1.069-1.6110.007
6A7PHE00.0160.0145.8090.1700.1700.0000.0000.0000.000
7A8SER0-0.046-0.0567.757-0.158-0.1580.0000.0000.0000.000
8A9ARG10.9510.9716.8972.3152.3150.0000.0000.0000.000
9A10LEU0-0.0350.01010.1370.0940.0940.0000.0000.0000.000
10A11GLU-1-0.844-0.92012.392-0.096-0.0960.0000.0000.0000.000
11A12PRO0-0.012-0.01616.0450.0790.0790.0000.0000.0000.000
12A13GLU-1-0.909-0.96517.9410.2340.2340.0000.0000.0000.000
13A14GLN00.0310.02514.041-0.049-0.0490.0000.0000.0000.000
14A15ARG10.8700.93312.7230.0510.0510.0000.0000.0000.000
15A16LYS10.8680.91915.656-0.160-0.1600.0000.0000.0000.000
16A17ALA00.0170.00419.1870.0140.0140.0000.0000.0000.000
17A18LEU00.0520.02812.7470.0090.0090.0000.0000.0000.000
18A19LEU0-0.032-0.01415.5790.0190.0190.0000.0000.0000.000
19A20ILE0-0.021-0.00918.352-0.020-0.0200.0000.0000.0000.000
20A21GLU-1-0.901-0.95119.4520.7030.7030.0000.0000.0000.000
21A22ALA00.0370.01917.688-0.007-0.0070.0000.0000.0000.000
22A23THR0-0.051-0.04119.886-0.043-0.0430.0000.0000.0000.000
23A24LEU00.0070.00222.741-0.029-0.0290.0000.0000.0000.000
24A25ALA00.0350.03721.808-0.029-0.0290.0000.0000.0000.000
25A26CYS0-0.069-0.03621.197-0.018-0.0180.0000.0000.0000.000
26A27LEU0-0.046-0.00324.125-0.033-0.0330.0000.0000.0000.000
27A28LYS10.9981.00927.212-0.413-0.4130.0000.0000.0000.000
28A29ARG10.9180.96023.954-0.490-0.4900.0000.0000.0000.000
29A30HIS0-0.063-0.04323.707-0.040-0.0400.0000.0000.0000.000
30A31GLY00.1080.07228.461-0.024-0.0240.0000.0000.0000.000
31A32PHE00.0770.01829.1330.0180.0180.0000.0000.0000.000
32A33GLN00.0170.00029.5430.0150.0150.0000.0000.0000.000
33A34GLY00.0190.02528.732-0.005-0.0050.0000.0000.0000.000
34A35ALA00.0260.03325.1840.0310.0310.0000.0000.0000.000
35A36SER0-0.014-0.02322.733-0.025-0.0250.0000.0000.0000.000
36A37VAL00.1320.05118.5970.0410.0410.0000.0000.0000.000
37A38ARG10.9550.97217.534-0.354-0.3540.0000.0000.0000.000
38A39LYS10.7910.90117.942-0.299-0.2990.0000.0000.0000.000
39A40ILE00.0690.03718.5050.0720.0720.0000.0000.0000.000
40A41CYS0-0.024-0.00714.1060.0310.0310.0000.0000.0000.000
41A42ALA0-0.045-0.01813.7830.1680.1680.0000.0000.0000.000
42A43GLU-1-0.972-0.97714.7510.9450.9450.0000.0000.0000.000
43A44ALA00.0250.01214.4200.0800.0800.0000.0000.0000.000
44A45GLY00.0120.02511.1260.2070.2070.0000.0000.0000.000
45A46VAL0-0.085-0.0629.3520.4120.4120.0000.0000.0000.000
46A47SER00.0020.0008.359-0.080-0.0800.0000.0000.0000.000
47A48VAL00.071-0.00210.487-0.100-0.1000.0000.0000.0000.000
48A49GLY0-0.0050.00612.347-0.060-0.0600.0000.0000.0000.000
49A50LEU0-0.001-0.0097.468-0.063-0.0630.0000.0000.0000.000
50A51ILE00.0030.00411.733-0.038-0.0380.0000.0000.0000.000
51A52ASN0-0.012-0.02215.1180.0130.0130.0000.0000.0000.000
52A53HIS0-0.0200.00515.235-0.056-0.0560.0000.0000.0000.000
53A54HIS0-0.084-0.03413.905-0.065-0.0650.0000.0000.0000.000
54A55TYR0-0.012-0.01317.7840.0280.0280.0000.0000.0000.000
55A56ASP-1-0.833-0.90020.5560.0200.0200.0000.0000.0000.000
56A57GLY0-0.024-0.03122.371-0.001-0.0010.0000.0000.0000.000
57A58LYS10.7980.90023.232-0.208-0.2080.0000.0000.0000.000
58A59ASP-1-0.837-0.93024.6010.1520.1520.0000.0000.0000.000
59A60ALA00.0180.01223.9660.0050.0050.0000.0000.0000.000
60A61LEU0-0.021-0.01019.4560.0060.0060.0000.0000.0000.000
61A62VAL0-0.007-0.01023.6280.0190.0190.0000.0000.0000.000
62A63ALA00.0300.01826.8620.0040.0040.0000.0000.0000.000
63A64GLU-1-0.828-0.89524.1230.1410.1410.0000.0000.0000.000
64A65ALA0-0.021-0.01424.9790.0080.0080.0000.0000.0000.000
65A66TYR0-0.0100.00426.4960.0010.0010.0000.0000.0000.000
66A67LEU00.0530.04228.824-0.005-0.0050.0000.0000.0000.000
67A68ALA0-0.019-0.00226.612-0.008-0.0080.0000.0000.0000.000
68A69VAL0-0.037-0.01428.3320.0020.0020.0000.0000.0000.000
69A70THR00.010-0.02330.422-0.009-0.0090.0000.0000.0000.000
70A71GLY00.0270.01332.075-0.010-0.0100.0000.0000.0000.000
71A72ARG10.8480.92529.410-0.263-0.2630.0000.0000.0000.000
72A73VAL00.0230.01732.169-0.004-0.0040.0000.0000.0000.000
73A74MET00.0380.03435.550-0.006-0.0060.0000.0000.0000.000
74A75ARG10.8990.95229.387-0.190-0.1900.0000.0000.0000.000
75A76LEU0-0.016-0.00133.840-0.005-0.0050.0000.0000.0000.000
76A77LEU00.0070.01337.138-0.006-0.0060.0000.0000.0000.000
77A78ARG10.8930.94938.109-0.102-0.1020.0000.0000.0000.000
78A79GLY00.0400.02339.203-0.007-0.0070.0000.0000.0000.000
79A80ALA00.0080.00840.128-0.005-0.0050.0000.0000.0000.000
80A81ILE0-0.013-0.01942.723-0.005-0.0050.0000.0000.0000.000
81A82ASP-1-0.933-0.96742.1610.0770.0770.0000.0000.0000.000
82A83THR0-0.117-0.05341.902-0.003-0.0030.0000.0000.0000.000
83A84ALA0-0.0140.00745.0210.0000.0000.0000.0000.0000.000
84A85PRO00.003-0.01648.170-0.005-0.0050.0000.0000.0000.000
85A86GLY0-0.043-0.01451.593-0.002-0.0020.0000.0000.0000.000
86A87GLY00.0110.00053.978-0.001-0.0010.0000.0000.0000.000
87A88ALA00.0090.00153.5000.0040.0040.0000.0000.0000.000
88A89ARG10.8430.91453.197-0.071-0.0710.0000.0000.0000.000
89A90PRO00.0110.00952.7410.0050.0050.0000.0000.0000.000
90A91ARG10.9250.97649.164-0.062-0.0620.0000.0000.0000.000
91A92LEU0-0.018-0.00648.5460.0050.0050.0000.0000.0000.000
92A93SER00.017-0.01348.9740.0040.0040.0000.0000.0000.000
93A94ALA0-0.0150.00545.9410.0070.0070.0000.0000.0000.000
94A95PHE00.0190.00043.9110.0090.0090.0000.0000.0000.000
95A96PHE0-0.005-0.02244.5590.0070.0070.0000.0000.0000.000
96A97GLU-1-0.911-0.96845.2520.1310.1310.0000.0000.0000.000
97A98ALA00.0090.00940.5920.0090.0090.0000.0000.0000.000
98A99SER0-0.051-0.01340.5480.0120.0120.0000.0000.0000.000
99A100PHE0-0.036-0.01041.5730.0070.0070.0000.0000.0000.000
100A101SER0-0.007-0.01539.1050.0060.0060.0000.0000.0000.000
101A102ALA00.019-0.01036.6460.0040.0040.0000.0000.0000.000
102A103GLU-1-0.934-0.97934.2320.2200.2200.0000.0000.0000.000
103A104LEU0-0.062-0.03834.6530.0130.0130.0000.0000.0000.000
104A105LEU00.0140.01937.023-0.001-0.0010.0000.0000.0000.000
105A106ASP-1-0.889-0.92933.3700.2990.2990.0000.0000.0000.000
106A107PRO00.0260.01134.9330.0050.0050.0000.0000.0000.000
107A108GLN0-0.070-0.02227.9690.0440.0440.0000.0000.0000.000
108A109LEU0-0.008-0.02827.9440.0130.0130.0000.0000.0000.000
109A110LEU00.0320.04631.644-0.007-0.0070.0000.0000.0000.000
110A111ASP-1-0.831-0.93631.8500.2700.2700.0000.0000.0000.000
111A112ALA0-0.071-0.02629.820-0.005-0.0050.0000.0000.0000.000
112A113TRP00.0520.00331.375-0.017-0.0170.0000.0000.0000.000
113A114LEU00.0140.02434.612-0.016-0.0160.0000.0000.0000.000
114A115ALA0-0.073-0.03831.497-0.012-0.0120.0000.0000.0000.000
115A116PHE0-0.051-0.04628.989-0.007-0.0070.0000.0000.0000.000
116A117TRP00.0430.00833.877-0.009-0.0090.0000.0000.0000.000
117A118GLY0-0.0040.00736.831-0.011-0.0110.0000.0000.0000.000
118A119ALA0-0.029-0.01933.390-0.008-0.0080.0000.0000.0000.000
119A120VAL00.0070.00735.431-0.011-0.0110.0000.0000.0000.000
120A121GLY0-0.026-0.00337.688-0.009-0.0090.0000.0000.0000.000
121A122SER0-0.079-0.03736.023-0.003-0.0030.0000.0000.0000.000
122A123ILE0-0.0160.00831.529-0.008-0.0080.0000.0000.0000.000
123A124GLU-1-0.857-0.93634.9850.0550.0550.0000.0000.0000.000
124A125ALA0-0.027-0.01930.761-0.002-0.0020.0000.0000.0000.000
125A126ILE0-0.015-0.01430.2930.0050.0050.0000.0000.0000.000
126A127GLY00.0510.01633.8510.0030.0030.0000.0000.0000.000
127A128ARG10.9580.98435.637-0.053-0.0530.0000.0000.0000.000
128A129VAL0-0.0040.01231.958-0.003-0.0030.0000.0000.0000.000
129A130HIS0-0.0010.01035.3620.0060.0060.0000.0000.0000.000
130A131ASP-1-0.906-0.94938.1250.0820.0820.0000.0000.0000.000
131A132HIS0-0.035-0.02336.140-0.008-0.0080.0000.0000.0000.000
132A133SER0-0.027-0.01536.4680.0010.0010.0000.0000.0000.000
133A134TYR00.0640.02138.555-0.005-0.0050.0000.0000.0000.000
134A135GLY0-0.002-0.01341.813-0.003-0.0030.0000.0000.0000.000
135A136GLU-1-0.909-0.97037.7910.0950.0950.0000.0000.0000.000
136A137TYR00.016-0.01540.904-0.001-0.0010.0000.0000.0000.000
137A138ARG10.9100.96742.810-0.083-0.0830.0000.0000.0000.000
138A139ALA0-0.0060.00545.118-0.004-0.0040.0000.0000.0000.000
139A140LEU0-0.015-0.00242.159-0.004-0.0040.0000.0000.0000.000
140A141LEU00.0270.01446.106-0.003-0.0030.0000.0000.0000.000
141A142VAL0-0.035-0.01948.689-0.004-0.0040.0000.0000.0000.000
142A143GLY0-0.025-0.01549.691-0.004-0.0040.0000.0000.0000.000
143A144VAL00.0320.02150.041-0.003-0.0030.0000.0000.0000.000
144A145LEU0-0.010-0.01151.930-0.002-0.0020.0000.0000.0000.000
145A146ARG10.9000.95552.754-0.051-0.0510.0000.0000.0000.000
146A147GLN00.0260.02953.0570.0000.0000.0000.0000.0000.000
147A148LEU00.0150.00156.003-0.001-0.0010.0000.0000.0000.000
148A149ALA0-0.034-0.02357.864-0.001-0.0010.0000.0000.0000.000
149A150GLU-1-0.974-0.96759.4590.0370.0370.0000.0000.0000.000
150A151GLU-1-0.896-0.97157.9220.0560.0560.0000.0000.0000.000
151A152GLY0-0.0280.00962.016-0.001-0.0010.0000.0000.0000.000
152A153GLY00.0050.00464.115-0.001-0.0010.0000.0000.0000.000
153A154TRP0-0.131-0.08759.275-0.001-0.0010.0000.0000.0000.000
154A155ALA00.0130.00564.3190.0000.0000.0000.0000.0000.000
155A156ASP-1-0.924-0.97264.0180.0360.0360.0000.0000.0000.000
156A157PHE00.0200.01157.1060.0010.0010.0000.0000.0000.000
157A158ASP-1-0.919-0.98557.4410.0500.0500.0000.0000.0000.000
158A159ALA0-0.002-0.01654.8840.0030.0030.0000.0000.0000.000
159A160GLU-1-0.897-0.95051.3220.0600.0600.0000.0000.0000.000
160A161LEU0-0.0010.00452.9230.0040.0040.0000.0000.0000.000
161A162ALA0-0.019-0.01154.7770.0040.0040.0000.0000.0000.000
162A163ALA00.0490.01750.0290.0040.0040.0000.0000.0000.000
163A164ILE0-0.0140.00050.0560.0060.0060.0000.0000.0000.000
164A165SER0-0.053-0.01650.8360.0050.0050.0000.0000.0000.000
165A166LEU00.0310.02049.7340.0040.0040.0000.0000.0000.000
166A167SER00.009-0.01946.3600.0060.0060.0000.0000.0000.000
167A168ALA00.0020.01946.8330.0060.0060.0000.0000.0000.000
168A169LEU0-0.038-0.01348.5410.0050.0050.0000.0000.0000.000
169A170LEU00.004-0.01145.2170.0040.0040.0000.0000.0000.000
170A171ASP-1-0.898-0.93343.5350.1380.1380.0000.0000.0000.000
171A172GLY0-0.041-0.01844.3400.0080.0080.0000.0000.0000.000
172A173LEU0-0.054-0.03846.6310.0040.0040.0000.0000.0000.000
173A174TRP0-0.0080.00136.5610.0050.0050.0000.0000.0000.000
174A175LEU0-0.008-0.01741.3820.0100.0100.0000.0000.0000.000
175A176GLU-1-0.915-0.97142.9000.1580.1580.0000.0000.0000.000
176A177SER0-0.024-0.00342.7970.0030.0030.0000.0000.0000.000
177A178GLY0-0.036-0.02240.0020.0080.0080.0000.0000.0000.000
178A179LEU0-0.063-0.02440.3890.0100.0100.0000.0000.0000.000
179A180ASN0-0.032-0.02742.4770.0070.0070.0000.0000.0000.000
180A181PRO00.0360.02440.955-0.008-0.0080.0000.0000.0000.000
181A182ALA0-0.064-0.02743.782-0.004-0.0040.0000.0000.0000.000
182A183THR0-0.034-0.00347.059-0.008-0.0080.0000.0000.0000.000
183A184PHE0-0.052-0.02846.760-0.009-0.0090.0000.0000.0000.000
184A185THR0-0.0110.00847.1600.0060.0060.0000.0000.0000.000
185A186PRO00.0880.02443.826-0.006-0.0060.0000.0000.0000.000
186A187ARG10.9840.99246.153-0.134-0.1340.0000.0000.0000.000
187A188GLN00.0060.00649.306-0.002-0.0020.0000.0000.0000.000
188A189GLY00.0590.04448.102-0.005-0.0050.0000.0000.0000.000
189A190VAL00.0220.00947.558-0.005-0.0050.0000.0000.0000.000
190A191GLN0-0.042-0.01749.887-0.002-0.0020.0000.0000.0000.000
191A192ILE00.0170.00551.600-0.006-0.0060.0000.0000.0000.000
192A193CYS0-0.034-0.00649.703-0.004-0.0040.0000.0000.0000.000
193A194GLU-1-0.795-0.88752.3660.0870.0870.0000.0000.0000.000
194A195ALA00.0020.01054.767-0.005-0.0050.0000.0000.0000.000
195A196TRP0-0.018-0.01154.586-0.005-0.0050.0000.0000.0000.000
196A197VAL0-0.022-0.00853.988-0.004-0.0040.0000.0000.0000.000
197A198ASP-1-0.838-0.91957.0240.0720.0720.0000.0000.0000.000
198A199GLY0-0.008-0.00659.881-0.004-0.0040.0000.0000.0000.000
199A200LEU0-0.030-0.02357.383-0.004-0.0040.0000.0000.0000.000
200A201GLU-1-0.871-0.95360.2790.0590.0590.0000.0000.0000.000
201A202ALA0-0.0360.00762.822-0.003-0.0030.0000.0000.0000.000
202A203GLY0-0.081-0.05464.683-0.002-0.0020.0000.0000.0000.000
203A204ALA00.0090.00762.069-0.002-0.0020.0000.0000.0000.000
204A205HIS10.9280.97561.926-0.051-0.0510.0000.0000.0000.000
205A206ARG10.9370.96662.946-0.048-0.0480.0000.0000.0000.000
206A207ARG10.9400.96363.143-0.056-0.0560.0000.0000.0000.000
207A208PHE0-0.0430.01457.4430.0010.0010.0000.0000.0000.000
208A209ARG10.9921.01960.060-0.043-0.0430.0000.0000.0000.000