FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: K2G23

Calculation Name: 1WLH-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1WLH

Chain ID: A

ChEMBL ID:

UniProt ID: P13466

Base Structure: X-ray

Registration Date: 2023-09-27

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 311
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3090133.343038
FMO2-HF: Nuclear repulsion 2976003.614552
FMO2-HF: Total energy -114129.728487
FMO2-MP2: Total energy -114466.437856


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:547:PRO)


Summations of interaction energy for fragment #1(A:547:PRO)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-9.853-6.5418.305-4.626-6.992-0.014
Interaction energy analysis for fragmet #1(A:547:PRO)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.039 / q_NPA : -0.037
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A549ALA00.0460.0113.736-3.044-0.285-0.014-1.312-1.4330.004
4A550ASP-1-0.755-0.8706.3160.3010.3010.0000.0000.0000.000
5A551PRO00.0490.0308.338-0.039-0.0390.0000.0000.0000.000
6A552GLU-1-0.939-0.99211.491-0.179-0.1790.0000.0000.0000.000
7A553LYS10.6680.8219.7770.2170.2170.0000.0000.0000.000
8A554SER0-0.066-0.04210.061-0.103-0.1030.0000.0000.0000.000
9A555TYR00.0080.01712.0470.0430.0430.0000.0000.0000.000
10A556ALA00.0320.00614.975-0.068-0.0680.0000.0000.0000.000
11A557GLU-1-0.994-1.00217.775-0.282-0.2820.0000.0000.0000.000
12A558GLY00.1210.06720.866-0.024-0.0240.0000.0000.0000.000
13A559PRO0-0.028-0.02623.7920.0160.0160.0000.0000.0000.000
14A560GLY00.0190.01726.856-0.009-0.0090.0000.0000.0000.000
15A561LEU0-0.040-0.01922.3840.0020.0020.0000.0000.0000.000
16A562ASP-1-0.928-0.96926.706-0.191-0.1910.0000.0000.0000.000
17A563GLY0-0.052-0.03829.4810.0140.0140.0000.0000.0000.000
18A564GLY00.0470.01531.610-0.012-0.0120.0000.0000.0000.000
19A565GLU-1-0.776-0.88234.097-0.109-0.1090.0000.0000.0000.000
20A566CYS0-0.1630.03936.386-0.006-0.0060.0000.0000.0000.000
21A567PHE00.003-0.00137.7670.0030.0030.0000.0000.0000.000
22A568GLN0-0.0360.01535.030-0.006-0.0060.0000.0000.0000.000
23A569PRO00.0050.01130.387-0.003-0.0030.0000.0000.0000.000
24A570SER0-0.020-0.03029.0510.0060.0060.0000.0000.0000.000
25A571LYS10.9050.96025.1550.2170.2170.0000.0000.0000.000
26A572PHE0-0.052-0.01920.1090.0100.0100.0000.0000.0000.000
27A573LYS10.8870.92917.0800.4340.4340.0000.0000.0000.000
28A574ILE0-0.006-0.00713.4100.0310.0310.0000.0000.0000.000
29A575HIS0-0.004-0.00612.831-0.067-0.0670.0000.0000.0000.000
30A576ALA00.0400.0188.3990.0510.0510.0000.0000.0000.000
31A577VAL0-0.0330.0287.272-0.039-0.0390.0000.0000.0000.000
32A578ASP-1-0.712-0.8523.450-5.242-3.6200.113-0.900-0.835-0.007
33A579PRO0-0.154-0.0924.9870.4380.4380.0000.0000.0000.000
34A580ASP-1-0.877-0.9756.877-0.472-0.4720.0000.0000.0000.000
35A581GLY0-0.029-0.0116.205-0.329-0.3290.0000.0000.0000.000
36A582VAL00.0230.0285.4590.2650.2650.0000.0000.0000.000
37A583HIS00.0650.0624.131-0.841-0.599-0.001-0.044-0.1980.000
38A584ARG10.7340.8472.0663.3451.5928.190-2.457-3.980-0.011
39A585THR0-0.087-0.0583.4990.4010.8430.0170.087-0.5460.000
40A586ASP-1-0.940-0.9765.656-1.406-1.4060.0000.0000.0000.000
41A587GLY00.0130.0078.2630.2880.2880.0000.0000.0000.000
42A588GLY0-0.002-0.0148.3250.1740.1740.0000.0000.0000.000
43A589ASP-1-0.933-0.9669.247-0.586-0.5860.0000.0000.0000.000
44A590GLY00.0800.05311.4940.1100.1100.0000.0000.0000.000
45A591PHE0-0.032-0.02410.6710.1080.1080.0000.0000.0000.000
46A592VAL00.0070.00915.3290.0290.0290.0000.0000.0000.000
47A593VAL0-0.002-0.00419.1290.0200.0200.0000.0000.0000.000
48A594THR0-0.036-0.01222.0510.0120.0120.0000.0000.0000.000
49A595ILE00.014-0.00125.649-0.002-0.0020.0000.0000.0000.000
50A596GLU-1-0.901-0.94528.650-0.139-0.1390.0000.0000.0000.000
51A597GLY00.0740.01531.936-0.003-0.0030.0000.0000.0000.000
52A598PRO0-0.082-0.01934.8980.0040.0040.0000.0000.0000.000
53A599ALA0-0.071-0.03636.6590.0030.0030.0000.0000.0000.000
54A600PRO0-0.0070.00234.704-0.002-0.0020.0000.0000.0000.000
55A601VAL0-0.005-0.02730.0790.0030.0030.0000.0000.0000.000
56A602ASP-1-0.929-0.94829.266-0.171-0.1710.0000.0000.0000.000
57A603PRO0-0.056-0.01625.0830.0030.0030.0000.0000.0000.000
58A604VAL0-0.031-0.02223.991-0.008-0.0080.0000.0000.0000.000
59A605MET0-0.031-0.01315.7930.0180.0180.0000.0000.0000.000
60A606VAL0-0.0110.01119.901-0.020-0.0200.0000.0000.0000.000
61A607ASP-1-0.758-0.88416.020-0.640-0.6400.0000.0000.0000.000
62A608ASN0-0.0120.00312.9020.0200.0200.0000.0000.0000.000
63A609GLY0-0.029-0.01613.5250.1050.1050.0000.0000.0000.000
64A610ASP-1-0.928-0.96211.159-0.858-0.8580.0000.0000.0000.000
65A611GLY00.0100.0099.1000.0040.0040.0000.0000.0000.000
66A612THR0-0.138-0.0729.9780.0540.0540.0000.0000.0000.000
67A613TYR00.031-0.03410.649-0.130-0.1300.0000.0000.0000.000
68A614ASP-1-0.934-0.93516.090-0.398-0.3980.0000.0000.0000.000
69A615VAL00.005-0.00519.8780.0170.0170.0000.0000.0000.000
70A616GLU-1-0.954-0.99022.123-0.215-0.2150.0000.0000.0000.000
71A617PHE00.0270.01025.8810.0030.0030.0000.0000.0000.000
72A618GLU-1-0.916-0.97328.813-0.151-0.1510.0000.0000.0000.000
73A619PRO0-0.0380.00732.1770.0060.0060.0000.0000.0000.000
74A620LYS10.9550.96634.4890.1360.1360.0000.0000.0000.000
75A621GLU-1-0.878-0.99937.980-0.089-0.0890.0000.0000.0000.000
76A622ALA00.023-0.00737.9250.0060.0060.0000.0000.0000.000
77A623GLY00.0690.04038.024-0.003-0.0030.0000.0000.0000.000
78A624ASP-1-0.907-0.95835.214-0.112-0.1120.0000.0000.0000.000
79A625TYR0-0.016-0.01731.2120.0050.0050.0000.0000.0000.000
80A626VAL0-0.047-0.01628.107-0.003-0.0030.0000.0000.0000.000
81A627ILE00.0200.00923.835-0.005-0.0050.0000.0000.0000.000
82A628ASN0-0.045-0.02823.3010.0060.0060.0000.0000.0000.000
83A629LEU00.0270.02716.774-0.012-0.0120.0000.0000.0000.000
84A630THR0-0.020-0.01517.6830.0220.0220.0000.0000.0000.000
85A631LEU0-0.0210.00810.103-0.060-0.0600.0000.0000.0000.000
86A632ASP-1-0.935-0.97010.752-0.633-0.6330.0000.0000.0000.000
87A633GLY0-0.101-0.04414.3250.0820.0820.0000.0000.0000.000
88A634ASP-1-0.913-0.95514.323-0.073-0.0730.0000.0000.0000.000
89A635ASN0-0.071-0.04216.494-0.057-0.0570.0000.0000.0000.000
90A636VAL00.1160.06814.1310.0030.0030.0000.0000.0000.000
91A637ASN0-0.0390.00115.5500.0820.0820.0000.0000.0000.000
92A638GLY0-0.111-0.04917.4520.0180.0180.0000.0000.0000.000
93A639PHE0-0.077-0.02019.6700.0250.0250.0000.0000.0000.000
94A640PRO00.023-0.02221.9630.0100.0100.0000.0000.0000.000
95A641LYS10.9390.98223.9990.2180.2180.0000.0000.0000.000
96A642THR0-0.015-0.00826.383-0.003-0.0030.0000.0000.0000.000
97A643VAL0-0.0120.03228.5440.0030.0030.0000.0000.0000.000
98A644THR0-0.059-0.02531.1200.0060.0060.0000.0000.0000.000
99A645VAL0-0.056-0.01833.524-0.005-0.0050.0000.0000.0000.000
100A646LYS10.9150.98436.0130.1120.1120.0000.0000.0000.000
101A647PRO00.018-0.06439.330-0.005-0.0050.0000.0000.0000.000
102A648ALA00.0510.00841.162-0.003-0.0030.0000.0000.0000.000
103A649PRO00.0160.01342.6100.0050.0050.0000.0000.0000.000
104A650SER0-0.046-0.01945.708-0.004-0.0040.0000.0000.0000.000
105A651ALA00.0150.00248.4360.0030.0030.0000.0000.0000.000
106A652GLU-1-0.897-0.95150.017-0.059-0.0590.0000.0000.0000.000
107A653HIS0-0.134-0.07451.4270.0020.0020.0000.0000.0000.000
108A654SER00.0390.03350.6090.0010.0010.0000.0000.0000.000
109A655TYR0-0.019-0.02653.296-0.001-0.0010.0000.0000.0000.000
110A656ALA00.0340.02055.825-0.001-0.0010.0000.0000.0000.000
111A657GLU-1-0.927-0.95957.971-0.047-0.0470.0000.0000.0000.000
112A658GLY00.0580.00860.515-0.001-0.0010.0000.0000.0000.000
113A659GLU-1-0.929-0.96963.092-0.038-0.0380.0000.0000.0000.000
114A660GLY00.0460.03162.6830.0010.0010.0000.0000.0000.000
115A661LEU0-0.041-0.02859.4360.0000.0000.0000.0000.0000.000
116A662VAL0-0.049-0.01163.8980.0010.0010.0000.0000.0000.000
117A663LYS10.8150.89867.6220.0370.0370.0000.0000.0000.000
118A664VAL00.0330.03365.4220.0000.0000.0000.0000.0000.000
119A665PHE0-0.020-0.00968.7560.0010.0010.0000.0000.0000.000
120A666ASP-1-0.812-0.91368.888-0.035-0.0350.0000.0000.0000.000
121A667ASN0-0.049-0.03370.063-0.001-0.0010.0000.0000.0000.000
122A668ALA0-0.053-0.03467.9670.0010.0010.0000.0000.0000.000
123A669PRO0-0.0030.02162.7080.0000.0000.0000.0000.0000.000
124A670ALA0-0.0130.00162.8990.0010.0010.0000.0000.0000.000
125A671GLU-1-0.898-0.96460.276-0.046-0.0460.0000.0000.0000.000
126A672PHE0-0.073-0.04756.4860.0010.0010.0000.0000.0000.000
127A673THR0-0.035-0.00655.225-0.001-0.0010.0000.0000.0000.000
128A674ILE0-0.0050.00251.8840.0010.0010.0000.0000.0000.000
129A675PHE0-0.029-0.02253.510-0.001-0.0010.0000.0000.0000.000
130A676ALA00.0110.01848.334-0.001-0.0010.0000.0000.0000.000
131A677VAL0-0.019-0.00350.4460.0010.0010.0000.0000.0000.000
132A678ASP-1-0.851-0.94245.974-0.079-0.0790.0000.0000.0000.000
133A679THR0-0.027-0.00544.3570.0030.0030.0000.0000.0000.000
134A680LYS10.9140.94845.1620.0820.0820.0000.0000.0000.000
135A681GLY0-0.0050.00249.2450.0030.0030.0000.0000.0000.000
136A682VAL0-0.057-0.01849.5270.0030.0030.0000.0000.0000.000
137A683ALA00.0350.02450.916-0.001-0.0010.0000.0000.0000.000
138A684ARG10.7520.85643.1280.0860.0860.0000.0000.0000.000
139A685THR0-0.006-0.01445.5770.0020.0020.0000.0000.0000.000
140A686ASP-1-0.900-0.90641.820-0.088-0.0880.0000.0000.0000.000
141A687GLY00.0200.02044.3270.0010.0010.0000.0000.0000.000
142A688GLY0-0.038-0.02440.843-0.004-0.0040.0000.0000.0000.000
143A689ASP-1-0.841-0.91040.759-0.098-0.0980.0000.0000.0000.000
144A690PRO0-0.043-0.01941.0920.0030.0030.0000.0000.0000.000
145A691PHE0-0.018-0.00943.6190.0000.0000.0000.0000.0000.000
146A692GLU-1-0.970-0.98546.070-0.089-0.0890.0000.0000.0000.000
147A693VAL0-0.004-0.01949.1630.0020.0020.0000.0000.0000.000
148A694ALA0-0.0320.00652.7950.0000.0000.0000.0000.0000.000
149A695ILE00.0240.00754.5450.0020.0020.0000.0000.0000.000
150A696ASN0-0.038-0.02456.9000.0000.0000.0000.0000.0000.000
151A697GLY00.0720.03260.5560.0010.0010.0000.0000.0000.000
152A698PRO0-0.023-0.00464.1110.0000.0000.0000.0000.0000.000
153A699ASP-1-0.990-1.01265.728-0.044-0.0440.0000.0000.0000.000
154A700GLY00.0090.03863.628-0.001-0.0010.0000.0000.0000.000
155A701LEU0-0.048-0.03361.473-0.002-0.0020.0000.0000.0000.000
156A702VAL0-0.042-0.02555.4320.0000.0000.0000.0000.0000.000
157A703VAL0-0.015-0.00958.4940.0010.0010.0000.0000.0000.000
158A704ASP-1-0.900-0.95754.460-0.061-0.0610.0000.0000.0000.000
159A705ALA0-0.0040.01154.6770.0020.0020.0000.0000.0000.000
160A706LYS10.9080.95151.1720.0590.0590.0000.0000.0000.000
161A707VAL00.0300.01049.6390.0020.0020.0000.0000.0000.000
162A708THR0-0.096-0.05349.831-0.002-0.0020.0000.0000.0000.000
163A709ASP-1-0.776-0.89744.952-0.080-0.0800.0000.0000.0000.000
164A710ASN0-0.034-0.01148.1070.0010.0010.0000.0000.0000.000
165A711ASN0-0.071-0.05344.288-0.005-0.0050.0000.0000.0000.000
166A712ASP-1-0.928-1.03247.437-0.060-0.0600.0000.0000.0000.000
167A713GLY00.0930.08848.311-0.001-0.0010.0000.0000.0000.000
168A714THR0-0.068-0.04149.0860.0020.0020.0000.0000.0000.000
169A715TYR00.0450.01445.990-0.003-0.0030.0000.0000.0000.000
170A716GLY00.0340.03651.6730.0020.0020.0000.0000.0000.000
171A717VAL0-0.030-0.01753.637-0.003-0.0030.0000.0000.0000.000
172A718VAL0-0.004-0.00755.9480.0020.0020.0000.0000.0000.000
173A719TYR0-0.021-0.02557.385-0.002-0.0020.0000.0000.0000.000
174A720ASP-1-0.867-0.92259.962-0.044-0.0440.0000.0000.0000.000
175A721ALA00.004-0.01562.858-0.001-0.0010.0000.0000.0000.000
176A722PRO0-0.003-0.01064.6790.0010.0010.0000.0000.0000.000
177A723VAL0-0.0020.02367.8030.0010.0010.0000.0000.0000.000
178A724GLU-1-0.885-0.92769.342-0.034-0.0340.0000.0000.0000.000
179A725GLY0-0.028-0.04370.1230.0000.0000.0000.0000.0000.000
180A726ASN0-0.114-0.07166.7200.0010.0010.0000.0000.0000.000
181A727TYR0-0.016-0.02063.109-0.001-0.0010.0000.0000.0000.000
182A728ASN0-0.060-0.02860.745-0.001-0.0010.0000.0000.0000.000
183A729VAL00.0280.02357.913-0.001-0.0010.0000.0000.0000.000
184A730ASN00.0640.00853.9880.0000.0000.0000.0000.0000.000
185A731VAL00.0330.00852.253-0.001-0.0010.0000.0000.0000.000
186A732THR00.0100.00649.1690.0010.0010.0000.0000.0000.000
187A733LEU00.0140.00845.258-0.001-0.0010.0000.0000.0000.000
188A734ARG10.7890.84838.6640.1130.1130.0000.0000.0000.000
189A735GLY00.0350.04044.645-0.001-0.0010.0000.0000.0000.000
190A736ASN0-0.052-0.04447.0530.0030.0030.0000.0000.0000.000
191A737PRO0-0.077-0.03849.657-0.001-0.0010.0000.0000.0000.000
192A738ILE00.0700.04950.5860.0000.0000.0000.0000.0000.000
193A739LYS10.9050.96353.2610.0600.0600.0000.0000.0000.000
194A740ASN0-0.090-0.06056.4080.0010.0010.0000.0000.0000.000
195A741MET0-0.0030.07155.6500.0020.0020.0000.0000.0000.000
196A742PRO0-0.047-0.03857.122-0.001-0.0010.0000.0000.0000.000
197A743ILE00.011-0.00359.0830.0010.0010.0000.0000.0000.000
198A744ASP-1-0.866-0.92062.517-0.046-0.0460.0000.0000.0000.000
199A745VAL00.0080.01363.7790.0010.0010.0000.0000.0000.000
200A746LYS10.9010.94866.5700.0350.0350.0000.0000.0000.000
201A747CYS00.0290.03168.4140.0000.0000.0000.0000.0000.000
202A748ILE0-0.112-0.05970.3200.0010.0010.0000.0000.0000.000
203A749GLU-1-0.820-0.92373.222-0.030-0.0300.0000.0000.0000.000
204A750GLY0-0.036-0.01274.0300.0000.0000.0000.0000.0000.000
205A751ALA0-0.060-0.01975.0680.0000.0000.0000.0000.0000.000
206A752ASN00.0410.01675.882-0.001-0.0010.0000.0000.0000.000
207A753GLY0-0.003-0.01676.8910.0010.0010.0000.0000.0000.000
208A754GLU-1-0.965-0.99274.637-0.028-0.0280.0000.0000.0000.000
209A755ASP-1-0.905-0.92378.515-0.026-0.0260.0000.0000.0000.000
210A756SER0-0.087-0.03980.7360.0000.0000.0000.0000.0000.000
211A757SER0-0.043-0.02382.9860.0000.0000.0000.0000.0000.000
212A758PHE0-0.038-0.02886.6840.0000.0000.0000.0000.0000.000
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