FMODB ID: K9QK3
Calculation Name: 1WWH-A-Xray372
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 1WWH
Chain ID: A
UniProt ID: Q8R4R6
Base Structure: X-ray
Registration Date: 2023-06-26
Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.
Modeling method
Optimization | MOE:Amber10:EHT |
---|---|
Restraint | OptAll |
Protonation | MOE:Protonate 3D |
Complement | MOE:Structure Preparation |
Water | No |
Procedure | Auto-FMO protocol ver. 2.20220422 |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 81 |
LigandCharge | |
Software | ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP) |
Total energy (hartree)
FMO2-HF: Electronic energy | -556523.993322 |
---|---|
FMO2-HF: Nuclear repulsion | 523602.817145 |
FMO2-HF: Total energy | -32921.176177 |
FMO2-MP2: Total energy | -33015.26925 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(A:169:HIS)
Summations of interaction energy for
fragment #1(A:169:HIS)
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-10.743 | -3.702 | 2.642 | -3.83 | -5.852 | -0.03 |
Interaction energy analysis for fragmet #1(A:169:HIS)
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | A | 171 | ASP | -1 | -0.788 | -0.892 | 3.200 | -1.406 | 0.954 | 0.089 | -1.027 | -1.422 | -0.001 |
4 | A | 172 | ASP | -1 | -0.797 | -0.897 | 2.476 | -13.387 | -9.695 | 2.308 | -2.380 | -3.620 | -0.033 |
5 | A | 173 | THR | 0 | -0.114 | -0.059 | 5.222 | 0.551 | 0.617 | -0.001 | -0.004 | -0.060 | 0.000 |
6 | A | 174 | TRP | 0 | 0.032 | 0.013 | 7.903 | 0.194 | 0.194 | 0.000 | 0.000 | 0.000 | 0.000 |
7 | A | 175 | VAL | 0 | -0.039 | -0.022 | 9.873 | -0.264 | -0.264 | 0.000 | 0.000 | 0.000 | 0.000 |
8 | A | 176 | THR | 0 | -0.006 | -0.019 | 12.695 | 0.094 | 0.094 | 0.000 | 0.000 | 0.000 | 0.000 |
9 | A | 177 | VAL | 0 | -0.005 | -0.001 | 15.731 | -0.063 | -0.063 | 0.000 | 0.000 | 0.000 | 0.000 |
10 | A | 178 | PHE | 0 | 0.001 | -0.012 | 18.583 | 0.036 | 0.036 | 0.000 | 0.000 | 0.000 | 0.000 |
11 | A | 179 | GLY | 0 | 0.033 | 0.018 | 22.195 | -0.017 | -0.017 | 0.000 | 0.000 | 0.000 | 0.000 |
12 | A | 180 | PHE | 0 | 0.004 | 0.004 | 22.573 | 0.012 | 0.012 | 0.000 | 0.000 | 0.000 | 0.000 |
13 | A | 181 | PRO | 0 | 0.050 | 0.027 | 27.736 | 0.001 | 0.001 | 0.000 | 0.000 | 0.000 | 0.000 |
14 | A | 182 | GLN | 0 | 0.011 | -0.011 | 27.919 | 0.005 | 0.005 | 0.000 | 0.000 | 0.000 | 0.000 |
15 | A | 183 | ALA | 0 | 0.003 | 0.002 | 29.809 | 0.008 | 0.008 | 0.000 | 0.000 | 0.000 | 0.000 |
16 | A | 184 | SER | 0 | 0.019 | 0.009 | 29.858 | 0.006 | 0.006 | 0.000 | 0.000 | 0.000 | 0.000 |
17 | A | 185 | ALA | 0 | 0.018 | 0.012 | 25.776 | -0.006 | -0.006 | 0.000 | 0.000 | 0.000 | 0.000 |
18 | A | 186 | SER | 0 | 0.025 | 0.009 | 25.727 | -0.006 | -0.006 | 0.000 | 0.000 | 0.000 | 0.000 |
19 | A | 187 | TYR | 0 | 0.059 | 0.030 | 27.115 | -0.001 | -0.001 | 0.000 | 0.000 | 0.000 | 0.000 |
20 | A | 188 | ILE | 0 | 0.019 | 0.005 | 22.968 | -0.004 | -0.004 | 0.000 | 0.000 | 0.000 | 0.000 |
21 | A | 189 | LEU | 0 | 0.024 | 0.005 | 20.853 | -0.014 | -0.014 | 0.000 | 0.000 | 0.000 | 0.000 |
22 | A | 190 | LEU | 0 | -0.007 | -0.003 | 22.825 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
23 | A | 191 | GLN | 0 | -0.010 | -0.002 | 24.552 | -0.011 | -0.011 | 0.000 | 0.000 | 0.000 | 0.000 |
24 | A | 192 | PHE | 0 | 0.032 | 0.006 | 18.190 | -0.025 | -0.025 | 0.000 | 0.000 | 0.000 | 0.000 |
25 | A | 193 | ALA | 0 | 0.035 | 0.032 | 19.443 | -0.011 | -0.011 | 0.000 | 0.000 | 0.000 | 0.000 |
26 | A | 194 | GLN | 0 | -0.091 | -0.041 | 20.951 | 0.020 | 0.020 | 0.000 | 0.000 | 0.000 | 0.000 |
27 | A | 195 | TYR | 0 | -0.050 | -0.013 | 17.412 | -0.017 | -0.017 | 0.000 | 0.000 | 0.000 | 0.000 |
28 | A | 196 | GLY | 0 | -0.008 | -0.019 | 16.269 | -0.027 | -0.027 | 0.000 | 0.000 | 0.000 | 0.000 |
29 | A | 197 | ASN | 0 | 0.004 | 0.006 | 16.720 | -0.013 | -0.013 | 0.000 | 0.000 | 0.000 | 0.000 |
30 | A | 198 | ILE | 0 | 0.028 | 0.014 | 15.884 | 0.014 | 0.014 | 0.000 | 0.000 | 0.000 | 0.000 |
31 | A | 199 | LEU | 0 | -0.012 | 0.004 | 12.756 | 0.038 | 0.038 | 0.000 | 0.000 | 0.000 | 0.000 |
32 | A | 200 | LYS | 1 | 0.889 | 0.932 | 15.404 | -0.297 | -0.297 | 0.000 | 0.000 | 0.000 | 0.000 |
33 | A | 201 | HIS | 0 | 0.024 | 0.020 | 16.296 | -0.041 | -0.041 | 0.000 | 0.000 | 0.000 | 0.000 |
34 | A | 202 | VAL | 0 | 0.007 | 0.008 | 17.529 | 0.032 | 0.032 | 0.000 | 0.000 | 0.000 | 0.000 |
35 | A | 203 | MET | 0 | -0.007 | 0.002 | 19.602 | -0.045 | -0.045 | 0.000 | 0.000 | 0.000 | 0.000 |
36 | A | 204 | SER | 0 | 0.023 | 0.029 | 22.375 | 0.029 | 0.029 | 0.000 | 0.000 | 0.000 | 0.000 |
37 | A | 205 | ASN | 0 | 0.023 | 0.001 | 23.609 | -0.011 | -0.011 | 0.000 | 0.000 | 0.000 | 0.000 |
38 | A | 206 | THR | 0 | 0.003 | -0.009 | 26.148 | -0.006 | -0.006 | 0.000 | 0.000 | 0.000 | 0.000 |
39 | A | 207 | GLY | 0 | 0.017 | 0.018 | 25.349 | -0.010 | -0.010 | 0.000 | 0.000 | 0.000 | 0.000 |
40 | A | 208 | ASN | 0 | -0.010 | 0.006 | 25.643 | 0.008 | 0.008 | 0.000 | 0.000 | 0.000 | 0.000 |
41 | A | 209 | TRP | 0 | 0.032 | 0.004 | 19.727 | -0.033 | -0.033 | 0.000 | 0.000 | 0.000 | 0.000 |
42 | A | 210 | MET | 0 | -0.038 | -0.011 | 19.325 | 0.042 | 0.042 | 0.000 | 0.000 | 0.000 | 0.000 |
43 | A | 211 | HIS | 0 | 0.027 | 0.034 | 14.741 | -0.106 | -0.106 | 0.000 | 0.000 | 0.000 | 0.000 |
44 | A | 212 | ILE | 0 | 0.001 | -0.013 | 14.803 | 0.065 | 0.065 | 0.000 | 0.000 | 0.000 | 0.000 |
45 | A | 213 | ARG | 1 | 0.930 | 0.974 | 9.160 | -0.618 | -0.618 | 0.000 | 0.000 | 0.000 | 0.000 |
46 | A | 214 | TYR | 0 | -0.014 | -0.034 | 11.805 | 0.040 | 0.040 | 0.000 | 0.000 | 0.000 | 0.000 |
47 | A | 215 | GLN | 0 | 0.043 | 0.021 | 11.537 | 0.016 | 0.016 | 0.000 | 0.000 | 0.000 | 0.000 |
48 | A | 216 | SER | 0 | 0.006 | -0.008 | 9.054 | 0.064 | 0.064 | 0.000 | 0.000 | 0.000 | 0.000 |
49 | A | 217 | LYS | 1 | 0.927 | 0.950 | 2.513 | 1.563 | 2.486 | 0.246 | -0.419 | -0.750 | 0.004 |
50 | A | 218 | LEU | 0 | -0.017 | 0.006 | 7.691 | -0.106 | -0.106 | 0.000 | 0.000 | 0.000 | 0.000 |
51 | A | 219 | GLN | 0 | 0.053 | 0.016 | 11.132 | -0.046 | -0.046 | 0.000 | 0.000 | 0.000 | 0.000 |
52 | A | 220 | ALA | 0 | 0.042 | 0.033 | 9.378 | -0.003 | -0.003 | 0.000 | 0.000 | 0.000 | 0.000 |
53 | A | 221 | ARG | 1 | 0.970 | 0.975 | 8.971 | 1.213 | 1.213 | 0.000 | 0.000 | 0.000 | 0.000 |
54 | A | 222 | LYS | 1 | 0.923 | 0.974 | 12.162 | 0.247 | 0.247 | 0.000 | 0.000 | 0.000 | 0.000 |
55 | A | 223 | ALA | 0 | 0.053 | 0.040 | 14.723 | 0.020 | 0.020 | 0.000 | 0.000 | 0.000 | 0.000 |
56 | A | 224 | LEU | 0 | 0.017 | 0.008 | 11.405 | 0.002 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 |
57 | A | 225 | SER | 0 | -0.102 | -0.063 | 15.257 | 0.025 | 0.025 | 0.000 | 0.000 | 0.000 | 0.000 |
58 | A | 226 | LYS | 1 | 0.893 | 0.937 | 17.737 | 0.252 | 0.252 | 0.000 | 0.000 | 0.000 | 0.000 |
59 | A | 227 | ASP | -1 | -0.772 | -0.878 | 18.004 | -0.475 | -0.475 | 0.000 | 0.000 | 0.000 | 0.000 |
60 | A | 228 | GLY | 0 | 0.036 | 0.019 | 20.083 | 0.010 | 0.010 | 0.000 | 0.000 | 0.000 | 0.000 |
61 | A | 229 | ARG | 1 | 0.814 | 0.920 | 21.227 | 0.348 | 0.348 | 0.000 | 0.000 | 0.000 | 0.000 |
62 | A | 230 | ILE | 0 | 0.030 | 0.015 | 25.562 | -0.003 | -0.003 | 0.000 | 0.000 | 0.000 | 0.000 |
63 | A | 231 | PHE | 0 | -0.043 | -0.027 | 22.807 | 0.003 | 0.003 | 0.000 | 0.000 | 0.000 | 0.000 |
64 | A | 232 | GLY | 0 | 0.017 | 0.008 | 28.826 | 0.003 | 0.003 | 0.000 | 0.000 | 0.000 | 0.000 |
65 | A | 233 | GLU | -1 | -0.855 | -0.918 | 31.832 | -0.093 | -0.093 | 0.000 | 0.000 | 0.000 | 0.000 |
66 | A | 234 | SER | 0 | -0.099 | -0.064 | 33.483 | -0.005 | -0.005 | 0.000 | 0.000 | 0.000 | 0.000 |
67 | A | 235 | ILE | 0 | 0.016 | 0.011 | 27.954 | -0.009 | -0.009 | 0.000 | 0.000 | 0.000 | 0.000 |
68 | A | 236 | MET | 0 | -0.014 | -0.003 | 26.292 | -0.012 | -0.012 | 0.000 | 0.000 | 0.000 | 0.000 |
69 | A | 237 | ILE | 0 | -0.059 | -0.024 | 21.918 | 0.006 | 0.006 | 0.000 | 0.000 | 0.000 | 0.000 |
70 | A | 238 | GLY | 0 | -0.008 | 0.011 | 21.295 | -0.020 | -0.020 | 0.000 | 0.000 | 0.000 | 0.000 |
71 | A | 239 | VAL | 0 | -0.051 | -0.037 | 15.552 | 0.022 | 0.022 | 0.000 | 0.000 | 0.000 | 0.000 |
72 | A | 240 | LYS | 1 | 0.836 | 0.906 | 14.202 | 0.546 | 0.546 | 0.000 | 0.000 | 0.000 | 0.000 |
73 | A | 241 | PRO | 0 | 0.028 | 0.006 | 8.844 | 0.106 | 0.106 | 0.000 | 0.000 | 0.000 | 0.000 |
74 | A | 242 | CYS | 0 | -0.044 | 0.015 | 10.257 | 0.112 | 0.112 | 0.000 | 0.000 | 0.000 | 0.000 |
75 | A | 243 | ILE | 0 | 0.030 | -0.002 | 9.601 | -0.188 | -0.188 | 0.000 | 0.000 | 0.000 | 0.000 |
76 | A | 244 | ASP | -1 | -0.820 | -0.910 | 11.453 | 0.098 | 0.098 | 0.000 | 0.000 | 0.000 | 0.000 |
77 | A | 245 | LYS | 1 | 0.884 | 0.916 | 6.959 | -0.395 | -0.395 | 0.000 | 0.000 | 0.000 | 0.000 |
78 | A | 246 | ASN | 0 | -0.011 | 0.014 | 12.085 | 0.107 | 0.107 | 0.000 | 0.000 | 0.000 | 0.000 |
79 | A | 247 | VAL | 0 | 0.004 | -0.002 | 14.570 | 0.070 | 0.070 | 0.000 | 0.000 | 0.000 | 0.000 |
80 | A | 248 | MET | 0 | -0.088 | -0.039 | 8.076 | 0.158 | 0.158 | 0.000 | 0.000 | 0.000 | 0.000 |
81 | A | 249 | GLU | -1 | -1.052 | -1.009 | 11.286 | 0.865 | 0.865 | 0.000 | 0.000 | 0.000 | 0.000 |