FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: KG4N3

Calculation Name: 1QTS-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1QTS

Chain ID: A

ChEMBL ID:

UniProt ID: P17427

Base Structure: X-ray

Registration Date: 2023-09-24

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 247
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3119650.182416
FMO2-HF: Nuclear repulsion 3021901.03568
FMO2-HF: Total energy -97749.146736
FMO2-MP2: Total energy -98033.460436


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:692:GLY)


Summations of interaction energy for fragment #1(A:692:GLY)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
1.1412.54-0.004-0.777-0.6180.004
Interaction energy analysis for fragmet #1(A:692:GLY)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.064 / q_NPA : 0.031
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A694PRO00.0300.0193.855-0.4120.987-0.004-0.777-0.6180.004
4A695GLY00.0140.0036.4290.5500.5500.0000.0000.0000.000
5A696ILE00.005-0.0107.892-0.099-0.0990.0000.0000.0000.000
6A697ARG10.7970.8985.2821.3051.3050.0000.0000.0000.000
7A698LEU00.001-0.0038.6870.2030.2030.0000.0000.0000.000
8A699GLY0-0.0180.00112.373-0.072-0.0720.0000.0000.0000.000
9A700SER0-0.055-0.0569.401-0.059-0.0590.0000.0000.0000.000
10A701SER00.0170.0029.9580.0780.0780.0000.0000.0000.000
11A702GLU-1-0.790-0.8895.3580.2270.2270.0000.0000.0000.000
12A703ASP-1-0.738-0.8239.3340.1640.1640.0000.0000.0000.000
13A704ASN0-0.019-0.01311.0120.0580.0580.0000.0000.0000.000
14A705PHE0-0.0060.0118.9680.0380.0380.0000.0000.0000.000
15A706ALA00.0730.0249.242-0.006-0.0060.0000.0000.0000.000
16A707ARG10.8600.92211.060-0.456-0.4560.0000.0000.0000.000
17A708PHE0-0.032-0.03414.030-0.106-0.1060.0000.0000.0000.000
18A709VAL00.0560.05311.921-0.038-0.0380.0000.0000.0000.000
19A710CYS0-0.0430.00214.963-0.032-0.0320.0000.0000.0000.000
20A711LYS10.8460.94218.253-0.444-0.4440.0000.0000.0000.000
21A712ASN00.025-0.00118.9890.0690.0690.0000.0000.0000.000
22A713ASN00.0290.01521.335-0.015-0.0150.0000.0000.0000.000
23A714GLY00.0130.01621.5760.0250.0250.0000.0000.0000.000
24A715VAL00.0240.00819.8510.0030.0030.0000.0000.0000.000
25A716LEU0-0.030-0.00214.2840.0310.0310.0000.0000.0000.000
26A717PHE00.030-0.00415.4920.0130.0130.0000.0000.0000.000
27A718GLU-1-0.785-0.86417.8420.0720.0720.0000.0000.0000.000
28A719ASN00.0460.04219.835-0.006-0.0060.0000.0000.0000.000
29A720GLN00.011-0.01122.1360.0050.0050.0000.0000.0000.000
30A721LEU00.0030.02025.3010.0040.0040.0000.0000.0000.000
31A722LEU00.0050.00522.9280.0070.0070.0000.0000.0000.000
32A723GLN0-0.048-0.03122.9830.0030.0030.0000.0000.0000.000
33A724ILE00.0180.00719.427-0.004-0.0040.0000.0000.0000.000
34A725GLY00.0140.01020.7790.0230.0230.0000.0000.0000.000
35A726LEU0-0.006-0.00517.938-0.004-0.0040.0000.0000.0000.000
36A727LYS10.8940.93422.555-0.175-0.1750.0000.0000.0000.000
37A728SER0-0.006-0.00221.996-0.005-0.0050.0000.0000.0000.000
38A729GLU-1-0.884-0.92524.3370.1870.1870.0000.0000.0000.000
39A730PHE00.0480.01320.3070.0010.0010.0000.0000.0000.000
40A731ARG10.9470.96625.593-0.173-0.1730.0000.0000.0000.000
41A732GLN00.0160.01627.9050.0000.0000.0000.0000.0000.000
42A733ASN00.0110.02324.7090.0120.0120.0000.0000.0000.000
43A734LEU0-0.0120.00124.5680.0020.0020.0000.0000.0000.000
44A735GLY00.0350.00224.3710.0190.0190.0000.0000.0000.000
45A736ARG10.8260.92725.318-0.163-0.1630.0000.0000.0000.000
46A737MET00.0370.03018.1810.0100.0100.0000.0000.0000.000
47A738PHE0-0.040-0.01723.767-0.021-0.0210.0000.0000.0000.000
48A739ILE00.004-0.00220.9910.0200.0200.0000.0000.0000.000
49A740PHE0-0.023-0.01124.235-0.016-0.0160.0000.0000.0000.000
50A741TYR00.027-0.01422.3960.0080.0080.0000.0000.0000.000
51A742GLY00.0640.02826.257-0.006-0.0060.0000.0000.0000.000
52A743ASN00.0070.00427.488-0.006-0.0060.0000.0000.0000.000
53A744LYS10.7830.86525.097-0.026-0.0260.0000.0000.0000.000
54A745THR0-0.033-0.01630.005-0.006-0.0060.0000.0000.0000.000
55A746SER00.0200.00332.7350.0040.0040.0000.0000.0000.000
56A747THR0-0.071-0.04334.898-0.003-0.0030.0000.0000.0000.000
57A748GLN0-0.028-0.00834.206-0.002-0.0020.0000.0000.0000.000
58A749PHE0-0.036-0.01428.020-0.007-0.0070.0000.0000.0000.000
59A750LEU00.0280.01032.6010.0040.0040.0000.0000.0000.000
60A751ASN0-0.005-0.01731.660-0.008-0.0080.0000.0000.0000.000
61A752PHE00.0060.01225.634-0.005-0.0050.0000.0000.0000.000
62A753THR00.014-0.00926.7230.0090.0090.0000.0000.0000.000
63A754PRO0-0.0320.00123.717-0.009-0.0090.0000.0000.0000.000
64A755THR0-0.049-0.02722.071-0.001-0.0010.0000.0000.0000.000
65A756LEU0-0.007-0.01919.4420.0110.0110.0000.0000.0000.000
66A757ILE00.0260.01516.724-0.013-0.0130.0000.0000.0000.000
67A758CYS0-0.0200.00615.6210.0290.0290.0000.0000.0000.000
68A759ALA00.0490.02313.129-0.033-0.0330.0000.0000.0000.000
69A760ASP-1-0.871-0.94215.157-0.019-0.0190.0000.0000.0000.000
70A761ASP-1-0.856-0.92614.7370.2600.2600.0000.0000.0000.000
71A762LEU00.0270.02112.9330.0170.0170.0000.0000.0000.000
72A763GLN0-0.082-0.05216.0210.0090.0090.0000.0000.0000.000
73A764THR0-0.075-0.03319.284-0.005-0.0050.0000.0000.0000.000
74A765ASN0-0.024-0.01716.818-0.010-0.0100.0000.0000.0000.000
75A766LEU0-0.036-0.02116.4740.0210.0210.0000.0000.0000.000
76A767ASN00.0110.00019.681-0.027-0.0270.0000.0000.0000.000
77A768LEU0-0.002-0.00918.5280.0210.0210.0000.0000.0000.000
78A769GLN00.0100.01423.113-0.015-0.0150.0000.0000.0000.000
79A770THR0-0.014-0.02624.9470.0060.0060.0000.0000.0000.000
80A771LYS10.9200.95427.489-0.074-0.0740.0000.0000.0000.000
81A772PRO00.0310.01129.0600.0050.0050.0000.0000.0000.000
82A773VAL0-0.0110.00428.2190.0070.0070.0000.0000.0000.000
83A774ASP-1-0.806-0.89131.2520.0140.0140.0000.0000.0000.000
84A775PRO0-0.031-0.00832.1700.0000.0000.0000.0000.0000.000
85A776THR0-0.032-0.02333.257-0.009-0.0090.0000.0000.0000.000
86A777VAL0-0.024-0.01930.2810.0060.0060.0000.0000.0000.000
87A778ASP-1-0.802-0.89233.4950.0110.0110.0000.0000.0000.000
88A779GLY0-0.009-0.00834.2960.0030.0030.0000.0000.0000.000
89A780GLY0-0.011-0.00433.6540.0020.0020.0000.0000.0000.000
90A781ALA0-0.0260.00634.1500.0070.0070.0000.0000.0000.000
91A782GLN0-0.017-0.02628.4360.0030.0030.0000.0000.0000.000
92A783VAL0-0.0060.01629.4780.0000.0000.0000.0000.0000.000
93A784GLN0-0.007-0.01628.5920.0130.0130.0000.0000.0000.000
94A785GLN00.0520.03424.722-0.010-0.0100.0000.0000.0000.000
95A786VAL0-0.013-0.01327.0890.0130.0130.0000.0000.0000.000
96A787VAL00.0100.02921.784-0.015-0.0150.0000.0000.0000.000
97A788ASN0-0.024-0.01324.8690.0190.0190.0000.0000.0000.000
98A789ILE00.0050.00420.862-0.003-0.0030.0000.0000.0000.000
99A790GLU-1-0.794-0.90123.1830.1420.1420.0000.0000.0000.000
100A791CYS0-0.0140.02719.9890.0020.0020.0000.0000.0000.000
101A792ILE00.003-0.00521.871-0.018-0.0180.0000.0000.0000.000
102A793SER00.024-0.00420.657-0.013-0.0130.0000.0000.0000.000
103A794ASP-1-0.767-0.86317.5630.3930.3930.0000.0000.0000.000
104A795PHE00.0110.00913.366-0.043-0.0430.0000.0000.0000.000
105A796THR00.0360.0058.4350.0480.0480.0000.0000.0000.000
106A797GLU-1-0.903-0.9576.7901.0811.0810.0000.0000.0000.000
107A798ALA0-0.012-0.0059.9710.0040.0040.0000.0000.0000.000
108A799PRO0-0.001-0.00111.562-0.099-0.0990.0000.0000.0000.000
109A800VAL0-0.0070.00012.1650.0340.0340.0000.0000.0000.000
110A801LEU0-0.0090.00914.609-0.019-0.0190.0000.0000.0000.000
111A802ASN0-0.019-0.02417.106-0.018-0.0180.0000.0000.0000.000
112A803ILE00.005-0.00519.2730.0160.0160.0000.0000.0000.000
113A804GLN0-0.022-0.00322.478-0.022-0.0220.0000.0000.0000.000
114A805PHE00.0090.00124.1580.0130.0130.0000.0000.0000.000
115A806ARG10.8740.94028.0930.0270.0270.0000.0000.0000.000
116A807TYR00.0800.03629.9100.0070.0070.0000.0000.0000.000
117A808GLY00.0380.03431.880-0.007-0.0070.0000.0000.0000.000
118A809GLY0-0.026-0.00434.694-0.004-0.0040.0000.0000.0000.000
119A810THR0-0.015-0.02230.239-0.004-0.0040.0000.0000.0000.000
120A811PHE00.0200.00324.6380.0080.0080.0000.0000.0000.000
121A812GLN0-0.028-0.01025.425-0.011-0.0110.0000.0000.0000.000
122A813ASN00.0310.00920.1500.0250.0250.0000.0000.0000.000
123A814VAL00.0030.01318.010-0.015-0.0150.0000.0000.0000.000
124A815SER00.0030.00115.0850.0210.0210.0000.0000.0000.000
125A816VAL0-0.038-0.01413.211-0.031-0.0310.0000.0000.0000.000
126A817LYS10.9100.9575.643-0.756-0.7560.0000.0000.0000.000
127A818LEU00.0500.01212.2360.0420.0420.0000.0000.0000.000
128A819PRO0-0.012-0.00313.5610.0640.0640.0000.0000.0000.000
129A820ILE0-0.044-0.02914.607-0.020-0.0200.0000.0000.0000.000
130A821THR00.008-0.01911.9600.0110.0110.0000.0000.0000.000
131A822LEU00.0230.02314.119-0.080-0.0800.0000.0000.0000.000
132A823ASN0-0.001-0.01115.9020.0090.0090.0000.0000.0000.000
133A824LYS10.7930.90516.947-0.575-0.5750.0000.0000.0000.000
134A825PHE0-0.003-0.00318.470-0.049-0.0490.0000.0000.0000.000
135A826PHE00.0000.01119.985-0.022-0.0220.0000.0000.0000.000
136A827GLN0-0.0500.00923.517-0.024-0.0240.0000.0000.0000.000
137A828PRO00.0670.04327.1810.0070.0070.0000.0000.0000.000
138A829THR0-0.061-0.05028.344-0.015-0.0150.0000.0000.0000.000
139A830GLU-1-0.791-0.91030.9940.2280.2280.0000.0000.0000.000
140A831MET0-0.071-0.00231.063-0.009-0.0090.0000.0000.0000.000
141A832ALA00.0500.02935.2100.0020.0020.0000.0000.0000.000
142A833SER00.0440.01435.1960.0050.0050.0000.0000.0000.000
143A834GLN0-0.010-0.02135.4820.0030.0030.0000.0000.0000.000
144A835ASP-1-0.806-0.89936.6710.1540.1540.0000.0000.0000.000
145A836PHE00.0590.01727.2430.0040.0040.0000.0000.0000.000
146A837PHE0-0.034-0.02331.7290.0070.0070.0000.0000.0000.000
147A838GLN0-0.050-0.00733.823-0.009-0.0090.0000.0000.0000.000
148A839ARG10.8590.89531.042-0.173-0.1730.0000.0000.0000.000
149A840TRP00.0100.00224.0740.0060.0060.0000.0000.0000.000
150A841LYS10.9000.95029.473-0.143-0.1430.0000.0000.0000.000
151A842GLN00.0070.00931.616-0.004-0.0040.0000.0000.0000.000
152A843LEU0-0.051-0.00724.219-0.003-0.0030.0000.0000.0000.000
153A844SER0-0.003-0.00528.339-0.011-0.0110.0000.0000.0000.000
154A845ASN00.0260.02023.971-0.010-0.0100.0000.0000.0000.000
155A846PRO00.0400.01023.7160.0200.0200.0000.0000.0000.000
156A847GLN0-0.017-0.01118.7650.0120.0120.0000.0000.0000.000
157A848GLN0-0.022-0.01719.9530.0300.0300.0000.0000.0000.000
158A849GLU-1-0.816-0.86020.9360.3120.3120.0000.0000.0000.000
159A850VAL00.0140.01414.349-0.001-0.0010.0000.0000.0000.000
160A851GLN0-0.007-0.00217.7070.0270.0270.0000.0000.0000.000
161A852ASN00.003-0.01411.773-0.044-0.0440.0000.0000.0000.000
162A853ILE0-0.012-0.01015.229-0.051-0.0510.0000.0000.0000.000
163A854PHE0-0.0160.00212.9380.0100.0100.0000.0000.0000.000
164A855LYS10.9790.97614.391-0.282-0.2820.0000.0000.0000.000
165A856ALA00.0030.00114.4210.1020.1020.0000.0000.0000.000
166A857LYS10.7930.8607.977-1.784-1.7840.0000.0000.0000.000
167A858HIS0-0.033-0.01713.595-0.130-0.1300.0000.0000.0000.000
168A859PRO00.016-0.00218.0100.0000.0000.0000.0000.0000.000
169A860MET0-0.0230.01820.9800.0080.0080.0000.0000.0000.000
170A861ASP-1-0.846-0.91322.9390.2170.2170.0000.0000.0000.000
171A862THR00.0260.01924.8060.0330.0330.0000.0000.0000.000
172A863GLU-1-0.838-0.92226.6720.2330.2330.0000.0000.0000.000
173A864ILE0-0.039-0.02721.5910.0200.0200.0000.0000.0000.000
174A865THR0-0.045-0.03521.9700.0520.0520.0000.0000.0000.000
175A866LYS10.8530.90622.980-0.203-0.2030.0000.0000.0000.000
176A867ALA0-0.0040.00024.3810.0110.0110.0000.0000.0000.000
177A868LYS10.8280.91317.336-0.521-0.5210.0000.0000.0000.000
178A869ILE00.0240.01720.3680.0490.0490.0000.0000.0000.000
179A870ILE00.0150.01122.2550.0090.0090.0000.0000.0000.000
180A871GLY0-0.013-0.00821.811-0.005-0.0050.0000.0000.0000.000
181A872PHE0-0.032-0.03215.2910.0330.0330.0000.0000.0000.000
182A873GLY00.0370.01819.9610.0230.0230.0000.0000.0000.000
183A874SER0-0.084-0.03522.981-0.017-0.0170.0000.0000.0000.000
184A875ALA00.006-0.00124.753-0.007-0.0070.0000.0000.0000.000
185A876LEU0-0.050-0.01926.3490.0300.0300.0000.0000.0000.000
186A877LEU0-0.051-0.01628.606-0.019-0.0190.0000.0000.0000.000
187A878GLU-1-0.752-0.86930.9030.2290.2290.0000.0000.0000.000
188A879GLU-1-0.926-0.96532.9350.1520.1520.0000.0000.0000.000
189A880VAL0-0.063-0.01531.416-0.008-0.0080.0000.0000.0000.000
190A881ASP-1-0.747-0.87829.2750.2170.2170.0000.0000.0000.000
191A882PRO0-0.018-0.01931.912-0.005-0.0050.0000.0000.0000.000
192A883ASN0-0.0110.00929.519-0.019-0.0190.0000.0000.0000.000
193A884PRO00.0260.01031.3540.0140.0140.0000.0000.0000.000
194A885ALA0-0.018-0.00329.4550.0040.0040.0000.0000.0000.000
195A886ASN0-0.086-0.05126.8050.0280.0280.0000.0000.0000.000
196A887PHE00.016-0.00224.415-0.006-0.0060.0000.0000.0000.000
197A888VAL0-0.006-0.00325.5900.0190.0190.0000.0000.0000.000
198A889GLY00.0510.03125.491-0.007-0.0070.0000.0000.0000.000
199A890ALA0-0.011-0.01026.0260.0050.0050.0000.0000.0000.000
200A891GLY00.0820.02425.947-0.001-0.0010.0000.0000.0000.000
201A892ILE0-0.079-0.03125.835-0.003-0.0030.0000.0000.0000.000
202A893ILE00.0260.02519.8100.0010.0010.0000.0000.0000.000
203A894HIS10.7890.88123.126-0.259-0.2590.0000.0000.0000.000
204A895THR00.016-0.02121.9460.0110.0110.0000.0000.0000.000
205A896LYS10.8380.92224.563-0.152-0.1520.0000.0000.0000.000
206A897THR0-0.040-0.02524.702-0.010-0.0100.0000.0000.0000.000
207A898THR0-0.010-0.00224.219-0.002-0.0020.0000.0000.0000.000
208A899GLN00.0350.02025.9220.0230.0230.0000.0000.0000.000
209A900ILE00.0130.02021.788-0.012-0.0120.0000.0000.0000.000
210A901GLY00.0280.03424.6130.0160.0160.0000.0000.0000.000
211A902CYS0-0.065-0.04722.2960.0240.0240.0000.0000.0000.000
212A903LEU0-0.0070.00124.106-0.019-0.0190.0000.0000.0000.000
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