FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-07-23

All entries: 44592

Number of unique PDB entries: 7794

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FMODB ID: KK7J3

Calculation Name: 4ZWS-E-Xray540

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

PDB ID: 4ZWS

Chain ID: E

ChEMBL ID:

UniProt ID: P04537

Base Structure: X-ray

Registration Date: 2025-07-11

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 189
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -679294.056532
FMO2-HF: Nuclear repulsion 639540.259583
FMO2-HF: Total energy -39753.796949
FMO2-MP2: Total energy -39867.798704


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(E:1:MET)


Summations of interaction energy for fragment #1(E:1:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-2.585-0.0250000000000032.713-1.671-3.6020.002
Interaction energy analysis for fragmet #1(E:1:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.136 / q_NPA : 0.044
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4E2ARG10.6980.9794.1521.2191.5420.002-0.141-0.1840.000
5E3LEU00.167-0.0973.889-1.4550.252-0.010-0.991-0.7060.004
6E3LEU0-0.0900.1177.2040.0580.0580.0000.0000.0000.000
7E4GLU00.039-0.1506.4000.2260.2260.0000.0000.0000.000
8E4GLU-1-0.858-0.7708.571-1.769-1.7690.0000.0000.0000.000
9E5ASP00.072-0.1015.8620.3630.3630.0000.0000.0000.000
10E5ASP-1-0.913-0.8044.874-0.578-0.514-0.001-0.005-0.0580.000
11E6LEU00.024-0.0905.9870.6250.6250.0000.0000.0000.000
12E6LEU0-0.0580.0753.3830.2030.1710.0550.176-0.1990.001
13E7GLN00.098-0.0946.8730.3730.3730.0000.0000.0000.000
14E7GLN0-0.0800.1019.6000.0710.0710.0000.0000.0000.000
15E8GLU00.147-0.08010.2680.1630.1630.0000.0000.0000.000
16E8GLU-1-0.918-0.79210.727-0.419-0.4190.0000.0000.0000.000
17E9GLU00.036-0.1319.5570.2030.2030.0000.0000.0000.000
18E9GLU-1-0.876-0.7757.837-0.376-0.3760.0000.0000.0000.000
19E10LEU00.124-0.09010.5880.1690.1690.0000.0000.0000.000
20E10LEU0-0.0760.11011.064-0.018-0.0180.0000.0000.0000.000
21E11LYS00.088-0.11912.3890.0980.0980.0000.0000.0000.000
22E11LYS10.7051.00614.2800.3970.3970.0000.0000.0000.000
23E12LYS00.051-0.09114.3580.0450.0450.0000.0000.0000.000
24E12LYS10.8241.04212.3200.2770.2770.0000.0000.0000.000
25E13ASP00.098-0.09214.5730.0630.0630.0000.0000.0000.000
26E13ASP-1-0.869-0.79012.690-0.306-0.3060.0000.0000.0000.000
27E14VAL00.034-0.10715.9390.0510.0510.0000.0000.0000.000
28E14VAL0-0.0790.10016.017-0.005-0.0050.0000.0000.0000.000
29E15PHE00.119-0.06618.2600.0100.0100.0000.0000.0000.000
30E15PHE0-0.0600.09920.2900.0030.0030.0000.0000.0000.000
31E16ILE00.017-0.10620.9880.0070.0070.0000.0000.0000.000
32E16ILE0-0.0860.09722.9820.0030.0030.0000.0000.0000.000
33E17ASP00.193-0.09724.148-0.003-0.0030.0000.0000.0000.000
34E17ASP-1-0.872-0.73125.435-0.049-0.0490.0000.0000.0000.000
35E18SER00.018-0.10126.5140.0100.0100.0000.0000.0000.000
36E18SER0-0.0160.08529.3630.0000.0000.0000.0000.0000.000
37E19THR00.003-0.08529.8690.0030.0030.0000.0000.0000.000
38E19THR0-0.0470.03629.9700.0040.0040.0000.0000.0000.000
39E20LYS00.035-0.07628.5960.0080.0080.0000.0000.0000.000
40E20LYS10.7900.99427.5100.0300.0300.0000.0000.0000.000
41E21LEU00.179-0.08628.2250.0040.0040.0000.0000.0000.000
42E21LEU0-0.0860.12127.9360.0000.0000.0000.0000.0000.000
43E22GLN00.082-0.11828.338-0.007-0.0070.0000.0000.0000.000
44E22GLN0-0.0530.10531.4560.0060.0060.0000.0000.0000.000
45E23TYR00.093-0.06727.2760.0030.0030.0000.0000.0000.000
46E23TYR0-0.1010.07821.5870.0090.0090.0000.0000.0000.000
47E24GLU00.073-0.12524.0040.0100.0100.0000.0000.0000.000
48E24GLU-1-0.863-0.76422.831-0.087-0.0870.0000.0000.0000.000
49E25ALA00.149-0.08223.613-0.017-0.0170.0000.0000.0000.000
50E25ALA0-0.0700.11227.4600.0010.0010.0000.0000.0000.000
51E26ALA00.077-0.10424.575-0.010-0.0100.0000.0000.0000.000
52E26ALA0-0.0840.10725.9280.0030.0030.0000.0000.0000.000
53E27ASN00.074-0.09621.6050.0110.0110.0000.0000.0000.000
54E27ASN0-0.1440.06819.9360.0140.0140.0000.0000.0000.000
55E28ASN00.122-0.07619.8940.0000.0000.0000.0000.0000.000
56E28ASN0-0.0760.08320.973-0.011-0.0110.0000.0000.0000.000
57E29VAL00.036-0.12219.418-0.032-0.0320.0000.0000.0000.000
58E29VAL0-0.0530.11621.4720.0020.0020.0000.0000.0000.000
59E30MET00.092-0.09218.587-0.004-0.0040.0000.0000.0000.000
60E30MET0-0.0710.11717.5640.0110.0110.0000.0000.0000.000
61E31LEU00.068-0.13315.3900.0380.0380.0000.0000.0000.000
62E31LEU0-0.0830.11915.356-0.008-0.0080.0000.0000.0000.000
63E32TYR00.153-0.08314.467-0.056-0.0560.0000.0000.0000.000
64E32TYR0-0.1080.09617.6300.0120.0120.0000.0000.0000.000
65E33SER00.005-0.09314.939-0.045-0.0450.0000.0000.0000.000
66E33SER0-0.0260.08116.7460.0260.0260.0000.0000.0000.000
67E34LYS00.068-0.10112.5910.0530.0530.0000.0000.0000.000
68E34LYS10.6910.97710.5390.1920.1920.0000.0000.0000.000
69E35TRP00.054-0.13010.1510.0520.0520.0000.0000.0000.000
70E35TRP0-0.1250.0957.321-0.114-0.1140.0000.0000.0000.000
71E36LEU00.133-0.09610.663-0.130-0.1300.0000.0000.0000.000
72E36LEU0-0.0850.11814.4430.0030.0030.0000.0000.0000.000
73E37ASN00.092-0.08611.576-0.026-0.0260.0000.0000.0000.000
74E37ASN0-0.1140.07611.5720.0030.0030.0000.0000.0000.000
75E38LYS00.055-0.0967.3340.4050.4050.0000.0000.0000.000
76E38LYS10.7801.0095.1650.4200.440-0.001-0.001-0.0170.000
77E39HIS00.188-0.0497.679-0.012-0.0120.0000.0000.0000.000
78E39HIS0-0.0680.11210.7320.1090.1090.0000.0000.0000.000
79E40SER00.022-0.0919.779-0.039-0.0390.0000.0000.0000.000
80E40SER0-0.0500.06412.3160.0190.0190.0000.0000.0000.000
81E41SER00.009-0.1078.450-0.115-0.1150.0000.0000.0000.000
82E41SER0-0.0620.0567.6440.1990.1990.0000.0000.0000.000
83E42ILE00.086-0.0866.8000.5760.5760.0000.0000.0000.000
84E42ILE0-0.0800.1154.722-0.112-0.067-0.001-0.010-0.0340.000
85E43LYS00.097-0.0977.610-0.009-0.0090.0000.0000.0000.000
86E43LYS10.8001.03211.9480.2460.2460.0000.0000.0000.000
87E44LYS00.105-0.06411.093-0.059-0.0590.0000.0000.0000.000
88E44LYS10.8401.05810.871-0.764-0.7640.0000.0000.0000.000
89E45GLU00.084-0.1047.503-0.118-0.1180.0000.0000.0000.000
90E45GLU-1-0.862-0.7485.9231.2611.2610.0000.0000.0000.000
91E46MET00.072-0.1209.013-0.019-0.0190.0000.0000.0000.000
92E46MET0-0.0850.1138.681-0.086-0.0860.0000.0000.0000.000
93E47LEU00.116-0.08310.445-0.035-0.0350.0000.0000.0000.000
94E47LEU0-0.0980.10413.8520.0000.0000.0000.0000.0000.000
95E48ARG00.078-0.10612.296-0.075-0.0750.0000.0000.0000.000
96E48ARG10.6910.9469.581-0.746-0.7460.0000.0000.0000.000
97E49ILE00.086-0.10011.3300.0290.0290.0000.0000.0000.000
98E49ILE0-0.1040.0958.030-0.033-0.0330.0000.0000.0000.000
99E50GLU00.066-0.14212.482-0.023-0.0230.0000.0000.0000.000
100E50GLU-1-0.946-0.80914.617-0.101-0.1010.0000.0000.0000.000
101E51ALA00.058-0.10715.534-0.039-0.0390.0000.0000.0000.000
102E51ALA0-0.0900.09916.4890.0090.0090.0000.0000.0000.000
103E52GLN00.105-0.08315.686-0.022-0.0220.0000.0000.0000.000
104E52GLN0-0.0960.10313.8410.0680.0680.0000.0000.0000.000
105E53LYS00.025-0.09116.7840.0040.0040.0000.0000.0000.000
106E53LYS10.7591.00315.9460.0900.0900.0000.0000.0000.000
107E54LYS0-0.097-0.14118.174-0.019-0.0190.0000.0000.0000.000
108E54LYS10.8970.94118.8680.0050.0050.0000.0000.0000.000
109E94LEU00.2130.05218.0830.0100.0100.0000.0000.0000.000
110E94LEU0-0.1110.07619.1450.0030.0030.0000.0000.0000.000
111E95LYS00.011-0.13215.447-0.060-0.0600.0000.0000.0000.000
112E95LYS10.9291.09114.8950.1920.1920.0000.0000.0000.000
113E96VAL00.099-0.08412.770-0.088-0.0880.0000.0000.0000.000
114E96VAL0-0.0430.12912.7600.0070.0070.0000.0000.0000.000
115E97ASP00.098-0.10512.510-0.045-0.0450.0000.0000.0000.000
116E97ASP-1-0.818-0.77916.339-0.146-0.1460.0000.0000.0000.000
117E98THR00.002-0.08913.279-0.061-0.0610.0000.0000.0000.000
118E98THR0-0.0570.06812.4680.0080.0080.0000.0000.0000.000
119E99SER00.027-0.0669.167-0.210-0.2100.0000.0000.0000.000
120E99SER0-0.0280.0757.6690.1300.1300.0000.0000.0000.000
121E100LEU00.104-0.0918.466-0.268-0.2680.0000.0000.0000.000
122E100LEU0-0.0930.10610.8120.0220.0220.0000.0000.0000.000
123E101GLN00.073-0.09410.191-0.099-0.0990.0000.0000.0000.000
124E101GLN0-0.1280.07312.8240.0130.0130.0000.0000.0000.000
125E102TYR00.128-0.0798.0300.0100.0100.0000.0000.0000.000
126E102TYR0-0.0710.0954.684-0.228-0.155-0.001-0.019-0.0530.000
127E103TRP00.022-0.1295.947-0.684-0.6840.0000.0000.0000.000
128E103TRP0-0.0470.0992.484-2.814-2.2292.653-1.200-2.039-0.003
129E104GLY00.098-0.0736.878-0.067-0.0670.0000.0000.0000.000
130E105ILE00.1270.0199.9370.0660.0660.0000.0000.0000.000
131E105ILE0-0.1000.0979.3810.0020.0020.0000.0000.0000.000
132E106LEU00.069-0.0925.3950.3330.346-0.0020.000-0.0100.000
133E106LEU0-0.1020.0943.175-0.064-0.3020.0190.520-0.3020.000
134E107LEU00.104-0.0856.663-0.036-0.0360.0000.0000.0000.000
135E107LEU0-0.0670.0999.3510.0610.0610.0000.0000.0000.000
136E108ASP00.080-0.1159.0820.1570.1570.0000.0000.0000.000
137E108ASP-1-0.981-0.81911.988-0.780-0.7800.0000.0000.0000.000
138E109PHE00.102-0.0809.2390.2750.2750.0000.0000.0000.000
139E109PHE0-0.0950.0888.055-0.070-0.0700.0000.0000.0000.000
140E110CYS00.105-0.1158.7000.1590.1590.0000.0000.0000.000
141E110CYS0-0.1720.0736.7350.0080.0080.0000.0000.0000.000
142E111SER0-0.018-0.0989.5670.1960.1960.0000.0000.0000.000
143E111SER0-0.0450.05912.4030.0670.0670.0000.0000.0000.000
144E112GLY00.007-0.09213.1100.1120.1120.0000.0000.0000.000
145E113ALA00.113-0.01211.6720.1280.1280.0000.0000.0000.000
146E113ALA0-0.0580.11011.072-0.027-0.0270.0000.0000.0000.000
147E114LEU00.048-0.09813.1040.0840.0840.0000.0000.0000.000
148E114LEU0-0.1130.08513.1750.0160.0160.0000.0000.0000.000
149E115ASP00.104-0.11015.1630.0680.0680.0000.0000.0000.000
150E115ASP-1-0.920-0.79717.873-0.305-0.3050.0000.0000.0000.000
151E116ALA00.103-0.10516.6520.0680.0680.0000.0000.0000.000
152E116ALA0-0.0740.11815.801-0.014-0.0140.0000.0000.0000.000
153E117ILE00.057-0.10816.6520.0370.0370.0000.0000.0000.000
154E117ILE0-0.1000.11015.1240.0050.0050.0000.0000.0000.000
155E118LYS00.161-0.04918.0200.0480.0480.0000.0000.0000.000
156E118LYS10.7371.00719.9280.2180.2180.0000.0000.0000.000
157E119SER00.021-0.09920.7040.0340.0340.0000.0000.0000.000
158E119SER0-0.0500.06621.3210.0060.0060.0000.0000.0000.000
159E120ARG00.065-0.11220.9310.0220.0220.0000.0000.0000.000
160E120ARG10.6850.98519.2810.1470.1470.0000.0000.0000.000
161E121GLY00.034-0.09422.2280.0220.0220.0000.0000.0000.000
162E122PHE00.052-0.00124.1050.0210.0210.0000.0000.0000.000
163E122PHE0-0.0840.08024.8860.0000.0000.0000.0000.0000.000
164E123ALA00.121-0.09425.6460.0170.0170.0000.0000.0000.000
165E123ALA0-0.0730.11825.221-0.004-0.0040.0000.0000.0000.000
166E124ILE00.076-0.09326.1160.0070.0070.0000.0000.0000.000
167E124ILE0-0.1150.09223.7950.0020.0020.0000.0000.0000.000
168E125LYS00.138-0.08227.6480.0110.0110.0000.0000.0000.000
169E125LYS10.7000.98829.7120.0840.0840.0000.0000.0000.000
170E126HIS0-0.013-0.11130.0850.0110.0110.0000.0000.0000.000
171E126HIS0-0.0240.10029.5120.0070.0070.0000.0000.0000.000
172E127ILE00.179-0.05430.6190.0050.0050.0000.0000.0000.000
173E127ILE0-0.1050.08128.1570.0000.0000.0000.0000.0000.000
174E128GLN00.066-0.09232.0880.0040.0040.0000.0000.0000.000
175E128GLN0-0.0810.08532.7100.0010.0010.0000.0000.0000.000
176E129ASP00.102-0.11734.0920.0080.0080.0000.0000.0000.000
177E129ASP-1-0.911-0.82235.033-0.073-0.0730.0000.0000.0000.000
178E130MET00.094-0.07635.4210.0060.0060.0000.0000.0000.000
179E130MET0-0.1220.08133.354-0.002-0.0020.0000.0000.0000.000
180E131ARG00.093-0.07736.2450.0020.0020.0000.0000.0000.000
181E131ARG10.7230.99831.9790.0650.0650.0000.0000.0000.000
182E132ALA00.095-0.07237.9360.0040.0040.0000.0000.0000.000
183E132ALA0-0.1110.07839.2570.0000.0000.0000.0000.0000.000
184E133PHE00.089-0.06439.9380.0050.0050.0000.0000.0000.000
185E133PHE0-0.1570.04940.282-0.001-0.0010.0000.0000.0000.000
186E134GLU00.027-0.12141.0050.0020.0020.0000.0000.0000.000
187E134GLU-1-1.023-0.87340.125-0.063-0.0630.0000.0000.0000.000
188E135ALA0-0.110-0.15342.7090.0030.0030.0000.0000.0000.000
189E135ALA00.0420.03742.9680.0010.0010.0000.0000.0000.000