FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-07-23

All entries: 44592

Number of unique PDB entries: 7794

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FMODB ID: KKRL3

Calculation Name: 2UWI-A-Xray540

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2UWI

Chain ID: A

ChEMBL ID:

UniProt ID: Q8UYL3

Base Structure: X-ray

Registration Date: 2025-07-11

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 227
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -890177.409149
FMO2-HF: Nuclear repulsion 835825.13203
FMO2-HF: Total energy -54352.277118
FMO2-MP2: Total energy -54492.708302


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:22:CYS)


Summations of interaction energy for fragment #1(A:22:CYS)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
0.7742.4940.101-0.086-1.7350
Interaction energy analysis for fragmet #1(A:22:CYS)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.155 / q_NPA : 0.014
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4A23GLU-1-0.977-0.8114.439-0.0020.3480.001-0.135-0.2150.000
5A24GLN00.086-0.1203.870-2.223-1.359-0.004-0.468-0.3930.003
6A24GLN0-0.0700.1043.8420.7150.925-0.001-0.076-0.1320.000
7A25GLY0-0.023-0.1086.3030.6280.6280.0000.0000.0000.000
8A26VAL00.058-0.0226.8050.3010.3010.0000.0000.0000.000
9A26VAL0-0.0630.1376.6290.0160.0160.0000.0000.0000.000
10A27SER0-0.009-0.0994.2970.8200.902-0.002-0.004-0.0760.000
11A27SER0-0.0440.0663.433-0.113-0.5160.0280.704-0.329-0.002
12A28TYR00.032-0.1023.803-2.010-1.9910.0380.014-0.0700.000
13A28TYR0-0.0740.0785.7620.3120.368-0.001-0.009-0.0460.000
14A29TYR00.175-0.0864.109-0.1660.1570.043-0.073-0.293-0.001
15A29TYR0-0.0520.1194.179-0.0970.0410.001-0.045-0.0950.000
16A30ASN00.041-0.0854.8920.2530.306-0.001-0.019-0.0340.000
17A30ASN0-0.0780.0508.6570.0880.0880.0000.0000.0000.000
18A31SER00.040-0.0858.5610.2090.2090.0000.0000.0000.000
19A31SER0-0.0160.05810.687-0.073-0.0730.0000.0000.0000.000
20A32GLN00.056-0.09010.9600.1330.1330.0000.0000.0000.000
21A32GLN0-0.0610.09113.701-0.026-0.0260.0000.0000.0000.000
22A33GLU0-0.006-0.10111.6650.1320.1320.0000.0000.0000.000
23A33GLU-1-0.863-0.79210.941-0.402-0.4020.0000.0000.0000.000
24A34LEU00.017-0.0929.7950.0280.0280.0000.0000.0000.000
25A34LEU0-0.0630.10511.0040.0240.0240.0000.0000.0000.000
26A35LYS00.077-0.1037.3920.3060.3060.0000.0000.0000.000
27A35LYS10.8241.0408.3810.3500.3500.0000.0000.0000.000
28A36CYS00.086-0.1153.926-0.633-0.6310.0010.037-0.0400.000
29A37CYS00.062-0.1054.8330.7440.770-0.002-0.012-0.0120.000
30A37CYS0-0.2090.1707.6900.0590.0590.0000.0000.0000.000
31A38LYS00.141-0.0866.137-0.972-0.9720.0000.0000.0000.000
32A38LYS10.8441.0649.2990.4950.4950.0000.0000.0000.000
33A39LEU00.080-0.0858.0590.0850.0850.0000.0000.0000.000
34A39LEU0-0.1160.0906.9770.0540.0540.0000.0000.0000.000
35A40CYS00.121-0.1169.3730.1480.1480.0000.0000.0000.000
36A40CYS0-0.3000.21214.165-0.022-0.0220.0000.0000.0000.000
37A41LYS00.093-0.07413.181-0.071-0.0710.0000.0000.0000.000
38A41LYS10.8531.05014.4900.4300.4300.0000.0000.0000.000
39A42PRO0-0.020-0.10214.6830.0330.0330.0000.0000.0000.000
40A43GLY00.0190.00417.7940.0350.0350.0000.0000.0000.000
41A44THR0-0.0440.02918.1640.0490.0490.0000.0000.0000.000
42A44THR0-0.0830.02716.953-0.001-0.0010.0000.0000.0000.000
43A45TYR00.145-0.06516.878-0.073-0.0730.0000.0000.0000.000
44A45TYR0-0.0930.06318.5740.0090.0090.0000.0000.0000.000
45A46SER00.087-0.06815.1260.0380.0380.0000.0000.0000.000
46A46SER0-0.1110.03714.136-0.054-0.0540.0000.0000.0000.000
47A47ASP00.092-0.07216.111-0.006-0.0060.0000.0000.0000.000
48A47ASP-1-0.946-0.82619.719-0.326-0.3260.0000.0000.0000.000
49A48HIS00.040-0.11817.5730.0200.0200.0000.0000.0000.000
50A48HIS0-0.0740.09618.0980.0030.0030.0000.0000.0000.000
51A49ARG00.098-0.06613.833-0.048-0.0480.0000.0000.0000.000
52A49ARG10.8991.04613.5680.6610.6610.0000.0000.0000.000
53A50CYS00.048-0.05711.5400.0920.0920.0000.0000.0000.000
54A51ASP00.062-0.07912.964-0.069-0.0690.0000.0000.0000.000
55A51ASP-1-0.837-0.79016.486-0.268-0.2680.0000.0000.0000.000
56A52LYS00.116-0.09613.935-0.025-0.0250.0000.0000.0000.000
57A52LYS10.7240.99015.1010.2820.2820.0000.0000.0000.000
58A53TYR00.061-0.11015.4680.0370.0370.0000.0000.0000.000
59A53TYR0-0.0700.09318.8720.0110.0110.0000.0000.0000.000
60A54SER0-0.018-0.05915.5970.0520.0520.0000.0000.0000.000
61A54SER0-0.0750.02516.521-0.015-0.0150.0000.0000.0000.000
62A55ASP00.148-0.09912.014-0.027-0.0270.0000.0000.0000.000
63A55ASP-1-0.915-0.80710.144-0.803-0.8030.0000.0000.0000.000
64A56THR0-0.040-0.09211.4180.1050.1050.0000.0000.0000.000
65A56THR0-0.0290.03610.264-0.023-0.0230.0000.0000.0000.000
66A57ILE00.086-0.07813.0440.0080.0080.0000.0000.0000.000
67A57ILE0-0.0800.11317.0380.0090.0090.0000.0000.0000.000
68A58CYS00.064-0.11716.027-0.014-0.0140.0000.0000.0000.000
69A59GLY00.086-0.06416.9680.0480.0480.0000.0000.0000.000
70A60HIS00.082-0.00120.235-0.045-0.0450.0000.0000.0000.000
71A60HIS0-0.0700.07921.998-0.018-0.0180.0000.0000.0000.000
72A61CYS00.073-0.12522.5430.0050.0050.0000.0000.0000.000
73A61CYS0-0.2490.22421.503-0.016-0.0160.0000.0000.0000.000
74A62PRO00.006-0.07423.8880.0220.0220.0000.0000.0000.000
75A63SER00.0810.02427.570-0.014-0.0140.0000.0000.0000.000
76A63SER0-0.0280.05331.8110.0050.0050.0000.0000.0000.000
77A64ASP00.050-0.09430.043-0.008-0.0080.0000.0000.0000.000
78A64ASP-1-0.955-0.81931.713-0.174-0.1740.0000.0000.0000.000
79A65THR0-0.024-0.12026.2380.0040.0040.0000.0000.0000.000
80A65THR0-0.0440.05325.398-0.011-0.0110.0000.0000.0000.000
81A66PHE00.131-0.07023.5270.0080.0080.0000.0000.0000.000
82A66PHE0-0.1140.07722.286-0.005-0.0050.0000.0000.0000.000
83A67THR00.042-0.11418.735-0.005-0.0050.0000.0000.0000.000
84A67THR0-0.0900.05517.7720.0080.0080.0000.0000.0000.000
85A68SER00.124-0.04219.5950.0060.0060.0000.0000.0000.000
86A68SER0-0.0430.06820.078-0.009-0.0090.0000.0000.0000.000
87A69ILE0-0.045-0.12215.4400.0460.0460.0000.0000.0000.000
88A69ILE0-0.0490.10214.320-0.006-0.0060.0000.0000.0000.000
89A70TYR00.181-0.06411.4650.0930.0930.0000.0000.0000.000
90A70TYR0-0.0630.11910.5170.0060.0060.0000.0000.0000.000
91A71ASN0-0.033-0.09311.848-0.176-0.1760.0000.0000.0000.000
92A71ASN0-0.0840.04414.1750.0280.0280.0000.0000.0000.000
93A72ARG00.072-0.08711.713-0.091-0.0910.0000.0000.0000.000
94A72ARG10.8341.0348.7321.5721.5720.0000.0000.0000.000
95A73SER00.032-0.10512.9370.0280.0280.0000.0000.0000.000
96A73SER00.0070.09217.115-0.024-0.0240.0000.0000.0000.000
97A74PRO0-0.011-0.09216.716-0.004-0.0040.0000.0000.0000.000
98A75TRP00.1020.02019.2090.0240.0240.0000.0000.0000.000
99A75TRP0-0.0680.09922.9130.0040.0040.0000.0000.0000.000
100A76CYS00.090-0.09620.410-0.054-0.0540.0000.0000.0000.000
101A77HIS00.087-0.09022.0750.0240.0240.0000.0000.0000.000
102A77HIS0-0.0810.09118.8930.0220.0220.0000.0000.0000.000
103A78SER00.124-0.07023.8420.0050.0050.0000.0000.0000.000
104A78SER0-0.0400.08528.6980.0000.0000.0000.0000.0000.000
105A79CYS00.004-0.11527.647-0.011-0.0110.0000.0000.0000.000
106A79CYS0-0.2550.22628.369-0.003-0.0030.0000.0000.0000.000
107A80ARG00.088-0.05029.0790.0070.0070.0000.0000.0000.000
108A80ARG10.7230.98129.6720.2060.2060.0000.0000.0000.000
109A81GLY00.032-0.08932.0030.0030.0030.0000.0000.0000.000
110A82PRO00.031-0.02035.544-0.002-0.0020.0000.0000.0000.000
111A83CYS00.1200.00137.7410.0020.0020.0000.0000.0000.000
112A83CYS0-0.2480.22135.686-0.003-0.0030.0000.0000.0000.000
113A84GLY00.039-0.06738.5330.0020.0020.0000.0000.0000.000
114A85THR00.0040.01742.385-0.002-0.0020.0000.0000.0000.000
115A85THR0-0.0090.05646.884-0.001-0.0010.0000.0000.0000.000
116A86ASN00.106-0.00744.3930.0040.0040.0000.0000.0000.000
117A86ASN0-0.1050.04343.954-0.004-0.0040.0000.0000.0000.000
118A87ARG00.019-0.13440.1920.0020.0020.0000.0000.0000.000
119A87ARG10.7991.01639.0980.1110.1110.0000.0000.0000.000
120A88VAL00.098-0.08039.5660.0030.0030.0000.0000.0000.000
121A88VAL0-0.0530.11838.5600.0010.0010.0000.0000.0000.000
122A89GLU00.117-0.08336.039-0.006-0.0060.0000.0000.0000.000
123A89GLU-1-0.859-0.78234.822-0.148-0.1480.0000.0000.0000.000
124A90VAL00.034-0.13534.9280.0020.0020.0000.0000.0000.000
125A90VAL0-0.0970.10333.1480.0010.0010.0000.0000.0000.000
126A91THR00.021-0.08830.4450.0040.0040.0000.0000.0000.000
127A91THR0-0.0180.06628.366-0.006-0.0060.0000.0000.0000.000
128A92PRO00.006-0.05731.214-0.003-0.0030.0000.0000.0000.000
129A93CYS00.2060.00529.203-0.013-0.0130.0000.0000.0000.000
130A94THR0-0.083-0.11227.4800.0170.0170.0000.0000.0000.000
131A94THR0-0.0120.04926.333-0.007-0.0070.0000.0000.0000.000
132A95PRO00.117-0.03523.793-0.016-0.0160.0000.0000.0000.000
133A96THR0-0.0090.00021.725-0.040-0.0400.0000.0000.0000.000
134A96THR0-0.0230.08421.2190.0060.0060.0000.0000.0000.000
135A97THR00.008-0.10522.533-0.030-0.0300.0000.0000.0000.000
136A97THR0-0.0100.10624.9350.0020.0020.0000.0000.0000.000
137A98ASN00.173-0.02825.1580.0090.0090.0000.0000.0000.000
138A98ASN0-0.0820.06225.9580.0060.0060.0000.0000.0000.000
139A99ARG00.152-0.05927.0870.0040.0040.0000.0000.0000.000
140A99ARG10.6460.95131.6600.1680.1680.0000.0000.0000.000
141A100ILE0-0.009-0.15830.633-0.008-0.0080.0000.0000.0000.000
142A100ILE0-0.1070.10227.6850.0000.0000.0000.0000.0000.000
143A101CYS00.146-0.11031.7230.0080.0080.0000.0000.0000.000
144A102HIS00.021-0.09735.009-0.007-0.0070.0000.0000.0000.000
145A102HIS0-0.0780.07332.4320.0030.0030.0000.0000.0000.000
146A103CYS00.221-0.06137.1830.0010.0010.0000.0000.0000.000
147A103CYS0-0.2190.18340.652-0.002-0.0020.0000.0000.0000.000
148A104ASP00.070-0.06240.788-0.003-0.0030.0000.0000.0000.000
149A104ASP-1-0.838-0.78144.508-0.080-0.0800.0000.0000.0000.000
150A105SER00.064-0.07743.521-0.001-0.0010.0000.0000.0000.000
151A105SER0-0.0320.08045.0240.0010.0010.0000.0000.0000.000
152A106ASN00.003-0.10945.0850.0020.0020.0000.0000.0000.000
153A106ASN0-0.1250.04648.3970.0040.0040.0000.0000.0000.000
154A107SER00.006-0.09545.1070.0040.0040.0000.0000.0000.000
155A107SER0-0.0460.04944.3970.0000.0000.0000.0000.0000.000
156A108TYR00.066-0.09842.179-0.002-0.0020.0000.0000.0000.000
157A108TYR0-0.0880.09442.6160.0000.0000.0000.0000.0000.000
158A109CYS00.153-0.12438.8880.0010.0010.0000.0000.0000.000
159A109CYS0-0.2980.22236.7830.0000.0000.0000.0000.0000.000
160A110LEU00.077-0.09740.2790.0010.0010.0000.0000.0000.000
161A110LEU0-0.0690.10242.1750.0000.0000.0000.0000.0000.000
162A111LEU00.128-0.09937.3000.0000.0000.0000.0000.0000.000
163A111LEU0-0.1180.10635.9050.0010.0010.0000.0000.0000.000
164A112LYS00.083-0.11133.6540.0020.0020.0000.0000.0000.000
165A112LYS10.8301.03832.6240.1480.1480.0000.0000.0000.000
166A113ALA00.114-0.06831.1310.0020.0020.0000.0000.0000.000
167A113ALA0-0.0900.09530.269-0.001-0.0010.0000.0000.0000.000
168A114SER00.044-0.10526.8060.0130.0130.0000.0000.0000.000
169A114SER0-0.0190.10225.7870.0000.0000.0000.0000.0000.000
170A115ASP00.016-0.08726.172-0.010-0.0100.0000.0000.0000.000
171A115ASP-1-0.805-0.77726.117-0.232-0.2320.0000.0000.0000.000
172A116GLY00.000-0.10027.0870.0070.0070.0000.0000.0000.000
173A117ASN00.1310.03230.3400.0180.0180.0000.0000.0000.000
174A117ASN0-0.0900.09231.295-0.002-0.0020.0000.0000.0000.000
175A118CYS00.100-0.13332.549-0.005-0.0050.0000.0000.0000.000
176A119VAL00.053-0.09736.1170.0020.0020.0000.0000.0000.000
177A119VAL0-0.0630.10734.932-0.001-0.0010.0000.0000.0000.000
178A120THR0-0.043-0.08337.4340.0040.0040.0000.0000.0000.000
179A120THR0-0.0130.07340.653-0.002-0.0020.0000.0000.0000.000
180A121CYS00.162-0.09640.7750.0000.0000.0000.0000.0000.000
181A122ALA00.071-0.10642.5690.0000.0000.0000.0000.0000.000
182A122ALA0-0.0480.13045.5890.0000.0000.0000.0000.0000.000
183A123PRO0-0.014-0.09045.946-0.001-0.0010.0000.0000.0000.000
184A124LYS00.1390.00248.2220.0000.0000.0000.0000.0000.000
185A124LYS10.6901.01043.3940.0780.0780.0000.0000.0000.000
186A125THR00.001-0.11348.7760.0020.0020.0000.0000.0000.000
187A125THR0-0.0390.09651.248-0.001-0.0010.0000.0000.0000.000
188A126LYS00.114-0.06951.8810.0000.0000.0000.0000.0000.000
189A126LYS10.8811.08954.6550.0470.0470.0000.0000.0000.000
190A127CYS00.101-0.12154.6500.0010.0010.0000.0000.0000.000
191A127CYS0-0.2070.20654.5370.0000.0000.0000.0000.0000.000
192A128GLY00.047-0.06656.8370.0000.0000.0000.0000.0000.000
193A129ARG00.042-0.04060.6320.0000.0000.0000.0000.0000.000
194A129ARG10.9471.11263.7150.0360.0360.0000.0000.0000.000
195A130GLY00.061-0.06463.4420.0010.0010.0000.0000.0000.000
196A131TYR00.005-0.02159.5170.0020.0020.0000.0000.0000.000
197A131TYR0-0.0720.09458.4860.0000.0000.0000.0000.0000.000
198A132GLY00.047-0.08956.7910.0000.0000.0000.0000.0000.000
199A133LYS00.145-0.00252.1790.0010.0010.0000.0000.0000.000
200A133LYS10.7301.01647.5990.0610.0610.0000.0000.0000.000
201A134LYS0-0.010-0.13251.9760.0030.0030.0000.0000.0000.000
202A134LYS10.8821.07351.0340.0390.0390.0000.0000.0000.000
203A135GLY00.021-0.09847.7990.0020.0020.0000.0000.0000.000
204A136GLU00.0580.00244.8820.0020.0020.0000.0000.0000.000
205A136GLU-1-0.813-0.75843.875-0.072-0.0720.0000.0000.0000.000
206A137ASP00.057-0.08044.1110.0030.0030.0000.0000.0000.000
207A137ASP-1-0.877-0.83143.959-0.072-0.0720.0000.0000.0000.000
208A138GLU00.116-0.11939.938-0.002-0.0020.0000.0000.0000.000
209A138GLU-1-1.021-0.83237.768-0.079-0.0790.0000.0000.0000.000
210A139MET00.074-0.10238.903-0.007-0.0070.0000.0000.0000.000
211A139MET0-0.1200.10340.9410.0000.0000.0000.0000.0000.000
212A140GLY0-0.017-0.11140.986-0.005-0.0050.0000.0000.0000.000
213A141ASN00.1030.00742.1160.0000.0000.0000.0000.0000.000
214A141ASN0-0.0230.11245.6470.0000.0000.0000.0000.0000.000
215A142THR0-0.017-0.10545.7960.0010.0010.0000.0000.0000.000
216A142THR0-0.0190.04949.8510.0000.0000.0000.0000.0000.000
217A143ILE00.142-0.06148.8460.0000.0000.0000.0000.0000.000
218A143ILE0-0.0980.13646.4690.0010.0010.0000.0000.0000.000
219A144CYS00.052-0.12350.2460.0010.0010.0000.0000.0000.000
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