FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-25

All entries: 37426

Number of unique PDB entries: 7782

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FMODB ID: KRJ63

Calculation Name: 6A84-A-Docking63-cpd15b

Preferred Name:

Target Type:

Ligand Name: 2-(4-chloro-1,2-dihydro-1'h-spiro[indole-3,4'-piperidin]-1'-yl)-5,6,7,8-tetrahydroquinazolin-4(3h)-one

ligand 3-letter code: 9SU

PDB ID: 6A84

Chain ID: A

ChEMBL ID:

UniProt ID:

Base Structure: Docking

Registration Date: 2019-08-23

Reference:

DOI: 10.1021/acs.jmedchem.8b01888


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHL
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Manual calculation
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 212
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -2637980.865834
FMO2-HF: Nuclear repulsion 2551771.867166
FMO2-HF: Total energy -86208.998668
FMO2-MP2: Total energy -86457.092235


3D Structure
Snapshot
 
Ligand structure

056

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-120.248-74.51062.810-30.825-77.7210.030


Interactive mode: IFIE and PIEDA for fragment #212(A:1163:056 )


Summations of interaction energy for fragment #212(A:1163:056 )
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-120.248-74.5162.81-30.825-77.721-0.03
Interaction energy analysis for fragmet #212(A:1163:056 )
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.027 / q_NPA : -0.001
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A952GLY 10.8180.88620.5180.2660.2660.0000.0000.0000.000
2A953THR 00.0680.01016.613-0.008-0.0080.0000.0000.0000.000
3A954ILE 00.0080.02619.7210.0020.0020.0000.0000.0000.000
4A955LEU 0-0.005-0.00116.4760.0030.0030.0000.0000.0000.000
5A956ILE 0-0.006-0.00120.439-0.012-0.0120.0000.0000.0000.000
6A957ASP -1-0.851-0.93420.9600.3430.3430.0000.0000.0000.000
7A958LEU 0-0.023-0.00419.032-0.028-0.0280.0000.0000.0000.000
8A959SER 00.0190.01222.5020.0230.0230.0000.0000.0000.000
9A960PRO 00.0640.01723.3360.0170.0170.0000.0000.0000.000
10A961ASP -1-0.905-0.94624.3580.3080.3080.0000.0000.0000.000
11A962ASP -1-0.931-0.95924.1970.3150.3150.0000.0000.0000.000
12A963LYS 10.9720.96624.171-0.257-0.2570.0000.0000.0000.000
13A964GLU -1-0.775-0.83220.0060.4500.4500.0000.0000.0000.000
14A965PHE 0-0.0080.00119.6990.0910.0910.0000.0000.0000.000
15A966GLN 00.000-0.01319.2030.0890.0890.0000.0000.0000.000
16A967SER 0-0.0080.00718.7160.0270.0270.0000.0000.0000.000
17A968VAL 0-0.014-0.00314.0110.0940.0940.0000.0000.0000.000
18A969GLU -1-0.894-0.94814.9890.9650.9650.0000.0000.0000.000
19A970GLU -1-0.881-0.95716.1030.8470.8470.0000.0000.0000.000
20A971GLU -1-0.933-0.94712.6501.0491.0490.0000.0000.0000.000
21A972MET 0-0.093-0.03510.3180.4450.4450.0000.0000.0000.000
22A973GLN 0-0.011-0.03012.3790.2190.2190.0000.0000.0000.000
23A974SER 0-0.0020.01514.9160.0120.0120.0000.0000.0000.000
24A975THR 0-0.0250.00210.2150.1310.1310.0000.0000.0000.000
25A976VAL 0-0.031-0.01110.0020.3650.3650.0000.0000.0000.000
26A977ARG 10.8410.9326.462-0.833-0.8330.0000.0000.0000.000
27A978GLU -1-0.858-0.91611.6550.5660.5660.0000.0000.0000.000
28A979HIS 0-0.051-0.0606.596-0.324-0.3240.0000.0000.0000.000
29A980ARG 10.9080.9169.1820.1170.1170.0000.0000.0000.000
30A981ASP -1-0.842-0.91310.2020.4840.4840.0000.0000.0000.000
31A982GLY 00.0200.01012.4900.0090.0090.0000.0000.0000.000
32A983GLY 00.0260.01512.6900.0140.0140.0000.0000.0000.000
33A984HIS 0-0.062-0.01412.4930.0400.0400.0000.0000.0000.000
34A985ALA 0-0.031-0.0268.6190.0170.0170.0000.0000.0000.000
35A986GLY 00.030-0.0079.5840.0400.0400.0000.0000.0000.000
36A987GLY 00.0260.01510.3860.0980.0980.0000.0000.0000.000
37A988ILE 0-0.0020.00513.3850.0720.0720.0000.0000.0000.000
38A989PHE 0-0.031-0.01610.1380.0280.0280.0000.0000.0000.000
39A990ASN 00.0640.03414.9590.0490.0490.0000.0000.0000.000
40A991ARG 10.9130.95615.780-0.521-0.5210.0000.0000.0000.000
41A992TYR 0-0.063-0.0679.8520.0880.0880.0000.0000.0000.000
42A993ASN 00.0160.01316.242-0.089-0.0890.0000.0000.0000.000
43A994ILE 00.0120.00114.7100.0800.0800.0000.0000.0000.000
44A995LEU 0-0.048-0.01717.248-0.094-0.0940.0000.0000.0000.000
45A996LYS 10.9280.95717.515-0.426-0.4260.0000.0000.0000.000
46A997ILE 00.0280.03615.6230.1250.1250.0000.0000.0000.000
47A998GLN 0-0.046-0.02316.268-0.068-0.0680.0000.0000.0000.000
48A999LYS 10.9070.94916.273-0.271-0.2710.0000.0000.0000.000
49A1000VAL 00.0110.00714.189-0.095-0.0950.0000.0000.0000.000
50A1001CYS 0-0.0200.01917.442-0.012-0.0120.0000.0000.0000.000
51A1002ASN 00.017-0.03418.407-0.045-0.0450.0000.0000.0000.000
52A1003LYS 10.9380.94820.3760.1360.1360.0000.0000.0000.000
53A1004LYS 10.9700.99019.7040.4640.4640.0000.0000.0000.000
54A1005LEU 0-0.036-0.02215.146-0.030-0.0300.0000.0000.0000.000
55A1006TRP 00.0650.03817.544-0.037-0.0370.0000.0000.0000.000
56A1007GLU -1-0.843-0.90519.952-0.197-0.1970.0000.0000.0000.000
57A1008ARG 10.9400.97115.5790.8340.8340.0000.0000.0000.000
58A1009TYR 0-0.041-0.01914.992-0.020-0.0200.0000.0000.0000.000
59A1010THR 0-0.070-0.04218.3230.0180.0180.0000.0000.0000.000
60A1011HIS 0-0.0080.00721.6980.0420.0420.0000.0000.0000.000
61A1012ARG 10.8900.94717.4660.6070.6070.0000.0000.0000.000
62A1013ARG 10.8850.93918.9340.0480.0480.0000.0000.0000.000
63A1014LYS 10.8820.93320.4050.2210.2210.0000.0000.0000.000
64A1015GLU -1-0.840-0.91722.564-0.462-0.4620.0000.0000.0000.000
65A1016VAL 0-0.0070.00117.7260.0100.0100.0000.0000.0000.000
66A1017SER 0-0.029-0.02820.9950.0270.0270.0000.0000.0000.000
67A1018GLU -1-0.890-0.93822.791-0.192-0.1920.0000.0000.0000.000
68A1019GLU -1-0.896-0.90522.392-0.430-0.4300.0000.0000.0000.000
69A1020ASN 0-0.087-0.05819.747-0.016-0.0160.0000.0000.0000.000
70A1021HIS 10.8720.93322.4530.1740.1740.0000.0000.0000.000
71A1022ASN 00.0080.01025.6860.0120.0120.0000.0000.0000.000
72A1023HIS 00.0600.03919.1340.0230.0230.0000.0000.0000.000
73A1024ALA 00.0520.02318.931-0.033-0.0330.0000.0000.0000.000
74A1025ASN 0-0.060-0.02315.3060.0460.0460.0000.0000.0000.000
75A1026GLU -1-0.725-0.84415.0660.0980.0980.0000.0000.0000.000
76A1027ARG 10.8680.93711.171-0.197-0.1970.0000.0000.0000.000
77A1028MET 00.0180.02511.653-0.149-0.1490.0000.0000.0000.000
78A1029LEU 0-0.0040.0016.2650.0130.0130.0000.0000.0000.000
79A1030PHE 00.0260.0185.217-0.120-0.1200.0000.0000.0000.000
80A1031HIS 0-0.026-0.0272.606-6.972-2.8492.000-1.965-4.1580.004
81A1032GLY 00.0400.0151.828-11.888-15.64110.896-3.739-3.4030.042
82A1033SER 00.002-0.0071.946-24.452-21.3397.856-4.799-6.170-0.060
83A1034PRO 00.0460.0332.3130.2171.6632.462-0.756-3.1520.003
84A1035PHE 0-0.019-0.0162.811-3.658-0.0342.549-1.401-4.7720.012
85A1036VAL 00.0680.0436.183-0.090-0.0900.0000.0000.0000.000
86A1037ASN 00.0470.0138.0010.2700.2700.0000.0000.0000.000
87A1038ALA 0-0.013-0.0098.9160.1320.1320.0000.0000.0000.000
88A1039ILE 00.0270.0255.1650.1960.1960.0000.0000.0000.000
89A1040ILE 00.0430.0349.6920.2220.2220.0000.0000.0000.000
90A1041HIS 0-0.077-0.00112.8550.1970.1970.0000.0000.0000.000
91A1042LYS 10.8120.89012.7860.8320.8320.0000.0000.0000.000
92A1043GLY 00.0140.01912.5930.0400.0400.0000.0000.0000.000
93A1044PHE 00.009-0.0065.814-0.128-0.1280.0000.0000.0000.000
94A1045ASP -1-0.871-0.9468.103-2.289-2.2890.0000.0000.0000.000
95A1046GLU -1-0.869-0.9307.196-3.189-3.1890.0000.0000.0000.000
96A1047ARG 10.9130.9645.7231.0581.0580.0000.0000.0000.000
97A1048HIS 0-0.031-0.0203.415-1.656-1.0840.013-0.079-0.5060.000
98A1049ALA 00.0030.0082.856-5.955-3.6360.502-1.164-1.657-0.012
99A1050TYR 0-0.040-0.0152.102-14.956-7.3527.067-4.181-10.490-0.018
100A1051ILE 00.011-0.0113.0011.8751.7010.1260.965-0.9160.000
101A1052GLY 00.002-0.0035.5700.3470.3470.0000.0000.0000.000
102A1053GLY 0-0.0140.0065.5110.2100.2100.0000.0000.0000.000
103A1054MET 0-0.005-0.0215.7540.2550.2550.0000.0000.0000.000
104A1055PHE 00.0080.0125.3570.2910.2910.0000.0000.0000.000
105A1056GLY 00.0340.0428.6460.0700.0700.0000.0000.0000.000
106A1057ALA 00.0130.0077.092-0.269-0.2690.0000.0000.0000.000
107A1058GLY 00.0730.0306.6870.3310.3310.0000.0000.0000.000
108A1059ILE 0-0.002-0.0044.898-1.626-1.6260.0000.0000.0000.000
109A1060TYR 0-0.016-0.0072.247-2.2840.4615.330-1.963-6.1120.004
110A1061PHE 00.0060.0003.135-0.5811.5680.167-0.648-1.668-0.003
111A1062ALA 00.008-0.0032.218-4.933-3.5442.648-1.134-2.902-0.009
112A1063GLU -1-0.747-0.8523.7341.2051.2850.018-0.004-0.0930.000
113A1064ASN 00.0150.0065.851-0.301-0.3010.0000.0000.0000.000
114A1065SER 00.1030.0605.4591.3811.3810.0000.0000.0000.000
115A1066SER 00.0490.0326.4481.1221.1220.0000.0000.0000.000
116A1067LYS 10.8020.8922.342-1.749-0.6442.056-0.520-2.6410.002
117A1068SER 00.0360.0051.975-14.029-12.0976.397-3.601-4.7280.032
118A1069ASN 00.0100.0303.450-2.956-3.3510.0180.811-0.4340.002
119A1070GLN 00.0170.0195.019-1.482-1.4820.0000.0000.0000.000
120A1071TYR 0-0.005-0.0092.175-13.399-3.8398.569-3.380-14.749-0.015
121A1072VAL 0-0.0150.0023.769-3.597-2.5980.008-0.300-0.708-0.002
122A1073TYR 0-0.003-0.0075.986-0.370-0.3700.0000.0000.0000.000
123A1074GLY 00.0050.0042.728-0.1440.5250.272-0.276-0.6650.000
124A1075ILE 0-0.012-0.0062.443-4.365-1.3442.241-0.951-4.3110.011
125A1076GLY 00.0070.0144.198-0.0330.2180.003-0.050-0.2040.000
126A1077GLY 00.0650.0366.3500.2010.2010.0000.0000.0000.000
127A1078GLY 0-0.034-0.0126.3230.0570.0570.0000.0000.0000.000
128A1079THR 0-0.023-0.0256.979-0.046-0.0460.0000.0000.0000.000
129A1080GLY 00.0340.0179.180-0.046-0.0460.0000.0000.0000.000
130A1081CYS 0-0.098-0.0039.978-0.013-0.0130.0000.0000.0000.000
131A1082PRO 00.018-0.00810.4710.0060.0060.0000.0000.0000.000
132A1083VAL 0-0.010-0.00612.554-0.008-0.0080.0000.0000.0000.000
133A1084HIS 00.025-0.02715.860-0.020-0.0200.0000.0000.0000.000
134A1085LYS 10.8950.96112.127-0.568-0.5680.0000.0000.0000.000
135A1086ASP -1-0.768-0.89114.3640.4960.4960.0000.0000.0000.000
136A1087ARG 10.8580.92610.638-0.513-0.5130.0000.0000.0000.000
137A1088SER 0-0.004-0.00313.1160.1180.1180.0000.0000.0000.000
138A1089CYS 0-0.0830.03515.403-0.021-0.0210.0000.0000.0000.000
139A1090TYR 00.010-0.02216.7840.0280.0280.0000.0000.0000.000
140A1091ILE 00.002-0.01219.194-0.006-0.0060.0000.0000.0000.000
141A1092CYS 0-0.033-0.03315.523-0.019-0.0190.0000.0000.0000.000
142A1093HIS 00.0420.02716.4170.0910.0910.0000.0000.0000.000
143A1094ARG 10.7950.90510.916-1.190-1.1900.0000.0000.0000.000
144A1095GLN 0-0.012-0.02610.616-0.155-0.1550.0000.0000.0000.000
145A1096LEU 0-0.0310.0025.1420.1610.259-0.001-0.002-0.0960.000
146A1097LEU 0-0.029-0.0166.607-1.093-1.0930.0000.0000.0000.000
147A1098PHE 00.0430.0267.1581.4601.4600.0000.0000.0000.000
148A1099CYS 0-0.069-0.0387.738-0.845-0.8450.0000.0000.0000.000
149A1100ARG 10.8240.89510.356-0.220-0.2200.0000.0000.0000.000
150A1101VAL 0-0.011-0.0048.483-0.229-0.2290.0000.0000.0000.000
151A1102THR 0-0.006-0.01211.9350.0440.0440.0000.0000.0000.000
152A1103LEU 0-0.0070.0009.703-0.150-0.1500.0000.0000.0000.000
153A1104GLY 00.0520.04413.513-0.097-0.0970.0000.0000.0000.000
154A1105LYS 10.9080.97216.5980.3400.3400.0000.0000.0000.000
155A1106SER 0-0.0060.00712.048-0.072-0.0720.0000.0000.0000.000
156A1107PHE 0-0.023-0.01113.9070.0610.0610.0000.0000.0000.000
157A1108LEU 0-0.017-0.00212.875-0.062-0.0620.0000.0000.0000.000
158A1109GLN 00.0160.01011.027-0.005-0.0050.0000.0000.0000.000
159A1110PHE 00.006-0.00111.324-0.042-0.0420.0000.0000.0000.000
160A1111SER 00.0180.0188.801-0.074-0.0740.0000.0000.0000.000
161A1112ALA 00.0330.02711.0920.0430.0430.0000.0000.0000.000
162A1113MET 0-0.023-0.0147.1170.0340.0340.0000.0000.0000.000
163A1114NME 00.0630.0508.4640.1090.1090.0000.0000.0000.000
164A1114ACE 00.019-0.0189.9910.1010.1010.0000.0000.0000.000
165A1115MET 0-0.070-0.0308.346-0.840-0.8400.0000.0000.0000.000
166A1116ALA 0-0.0270.00610.4320.3570.3570.0000.0000.0000.000
167A1117HIS 00.017-0.00212.788-0.035-0.0350.0000.0000.0000.000
168A1118SER 0-0.017-0.00514.241-0.016-0.0160.0000.0000.0000.000
169A1119PRO 00.0180.00814.0540.0500.0500.0000.0000.0000.000
170A1120PRO 00.0750.02417.2960.0210.0210.0000.0000.0000.000
171A1121GLY 0-0.0010.01720.9010.0280.0280.0000.0000.0000.000
172A1122HIS 0-0.091-0.05516.2180.0800.0800.0000.0000.0000.000
173A1123HIS 00.005-0.02715.983-0.038-0.0380.0000.0000.0000.000
174A1124SER 0-0.031-0.03210.747-0.064-0.0640.0000.0000.0000.000
175A1125VAL 00.0030.0119.4580.0930.0930.0000.0000.0000.000
176A1126THR 0-0.012-0.0278.771-0.001-0.0010.0000.0000.0000.000
177A1127GLY 00.0310.0127.2610.0200.0200.0000.0000.0000.000
178A1128ARG 10.9830.9707.6560.0990.0990.0000.0000.0000.000
179A1129PRO 0-0.036-0.0257.713-0.018-0.0180.0000.0000.0000.000
180A1130SER 00.005-0.00110.3380.0840.0840.0000.0000.0000.000
181A1131VAL 0-0.0230.00412.9830.0340.0340.0000.0000.0000.000
182A1132ASN 0-0.015-0.02011.3390.0620.0620.0000.0000.0000.000
183A1133GLY 00.0410.02012.836-0.008-0.0080.0000.0000.0000.000
184A1134LEU 00.0210.00513.6500.0180.0180.0000.0000.0000.000
185A1135ALA 0-0.115-0.0488.4150.1200.1200.0000.0000.0000.000
186A1136LEU 00.0160.0158.056-0.122-0.1220.0000.0000.0000.000
187A1137ALA 0-0.058-0.0236.909-0.223-0.2230.0000.0000.0000.000
188A1138GLU -1-0.900-0.9572.339-6.858-3.8811.614-1.667-2.924-0.023
189A1139TYR 0-0.090-0.0844.124-0.197-0.0430.000-0.014-0.1400.000
190A1140VAL 0-0.0180.0034.775-0.359-0.229-0.001-0.007-0.1220.000
191A1141ILE 00.0120.0097.1160.3350.3350.0000.0000.0000.000
192A1142TYR 00.001-0.0309.660-0.439-0.4390.0000.0000.0000.000
193A1143ARG 10.9690.98811.6250.8500.8500.0000.0000.0000.000
194A1144GLY 00.0610.03610.6610.0130.0130.0000.0000.0000.000
195A1145GLU -1-0.930-0.98611.653-0.936-0.9360.0000.0000.0000.000
196A1146GLN 0-0.050-0.03413.5050.1550.1550.0000.0000.0000.000
197A1147ALA 00.0170.01110.5070.1870.1870.0000.0000.0000.000
198A1148TYR 0-0.036-0.04212.589-0.279-0.2790.0000.0000.0000.000
199A1149PRO 0-0.022-0.01510.4460.2710.2710.0000.0000.0000.000
200A1150GLU -1-0.804-0.88811.9450.3100.3100.0000.0000.0000.000
201A1151TYR 0-0.034-0.05712.636-0.111-0.1110.0000.0000.0000.000
202A1152LEU 0-0.032-0.01611.6200.2290.2290.0000.0000.0000.000
203A1153ILE 00.0270.01210.643-0.128-0.1280.0000.0000.0000.000
204A1154THR 0-0.020-0.01512.0660.0720.0720.0000.0000.0000.000
205A1155TYR 0-0.011-0.0309.2020.1320.1320.0000.0000.0000.000
206A1156GLN 00.0270.01914.807-0.032-0.0320.0000.0000.0000.000
207A1157ILE 0-0.0160.00512.8780.0810.0810.0000.0000.0000.000
208A1158MET 00.003-0.00415.610-0.101-0.1010.0000.0000.0000.000
209A1159ARG 10.9270.95718.572-0.396-0.3960.0000.0000.0000.000
210A1160PRO 0-0.059-0.02819.155-0.009-0.0090.0000.0000.0000.000
211A1161GLU -2-1.794-1.87321.7250.8100.8100.0000.0000.0000.000