FMODB ID: KVJQ3
Calculation Name: 3RYK-A-Xray547
Preferred Name:
Target Type:
Ligand Name: thymidine-5'-diphosphate | pyrophosphate 2-
Ligand 3-letter code: TYD | POP
Ligand of Interest (LOI):
Structure Source: PDB
PDB ID: 3RYK
Chain ID: A
UniProt ID: A0A1S0
Base Structure: X-ray
Registration Date: 2025-10-05
Reference: Sci Data 11, 1164 (2024).
DOI: https://doi.org/10.1038/s41597-024-03999-2
Apendix: None
Modeling method
| Optimization | MOE:Amber10:EHT |
|---|---|
| Restraint | OptAll |
| Protonation | MOE:Protonate 3D |
| Complement | MOE:Homology Modeling |
| Water | No |
| Procedure | Manual calculation |
| Remarks |
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE. |
FMO calculation
| FMO method | FMO2-MP2/6-31G(d) |
|---|---|
| Fragmentation | Auto |
| Number of fragment | 175 |
| LigandResidueName | |
| LigandFragmentNumber | 0 |
| LigandCharge | |
| Software | ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922 |
Total energy (hartree)
| FMO2-HF: Electronic energy | -1880511.245023 |
|---|---|
| FMO2-HF: Nuclear repulsion | 1811422.075961 |
| FMO2-HF: Total energy | -69089.169061 |
| FMO2-MP2: Total energy | -69293.287273 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
| IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
|---|---|---|---|---|---|
| IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
| N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(A:0:ALA)
Summations of interaction energy for
fragment #1(A:0:ALA)
| IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
|---|---|---|---|---|---|
| IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
| 21.341 | 23.541 | 3.14 | -1.952 | -3.387 | -0.016 |
Interaction energy analysis for fragmet #1(A:0:ALA)
| frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3 | A | 2 | LYS | 1 | 0.938 | 0.971 | 3.312 | 38.675 | 40.249 | 0.047 | -0.873 | -0.748 | -0.003 |
| 18 | A | 17 | ARG | 1 | 0.867 | 0.922 | 2.809 | 44.879 | 45.813 | 0.112 | -0.333 | -0.713 | -0.004 |
| 19 | A | 18 | LEU | 0 | 0.044 | 0.043 | 4.923 | 2.036 | 2.164 | -0.001 | -0.010 | -0.117 | 0.000 |
| 32 | A | 31 | ASN | 0 | -0.035 | -0.033 | 4.742 | 2.995 | 3.067 | -0.001 | -0.004 | -0.067 | 0.000 |
| 35 | A | 34 | VAL | 0 | -0.036 | -0.010 | 2.245 | -2.838 | -3.351 | 2.984 | -0.725 | -1.746 | -0.009 |
| 36 | A | 35 | LEU | 0 | 0.025 | 0.020 | 4.755 | 0.458 | 0.463 | -0.001 | -0.007 | 0.004 | 0.000 |
| 4 | A | 3 | VAL | 0 | 0.042 | 0.023 | 6.047 | 2.860 | 2.860 | 0.000 | 0.000 | 0.000 | 0.000 |
| 5 | A | 4 | ILE | 0 | -0.070 | -0.020 | 9.551 | -0.360 | -0.360 | 0.000 | 0.000 | 0.000 | 0.000 |
| 6 | A | 5 | GLU | -1 | -0.788 | -0.880 | 12.563 | -15.557 | -15.557 | 0.000 | 0.000 | 0.000 | 0.000 |
| 7 | A | 6 | THR | 0 | -0.036 | -0.033 | 14.126 | -1.230 | -1.230 | 0.000 | 0.000 | 0.000 | 0.000 |
| 8 | A | 7 | ASN | 0 | -0.002 | 0.003 | 16.351 | 0.161 | 0.161 | 0.000 | 0.000 | 0.000 | 0.000 |
| 9 | A | 8 | PHE | 0 | 0.038 | 0.008 | 19.940 | -0.341 | -0.341 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10 | A | 9 | THR | 0 | 0.002 | 0.021 | 20.351 | 0.228 | 0.228 | 0.000 | 0.000 | 0.000 | 0.000 |
| 11 | A | 10 | ASP | -1 | -0.842 | -0.924 | 17.840 | -15.398 | -15.398 | 0.000 | 0.000 | 0.000 | 0.000 |
| 12 | A | 11 | ALA | 0 | -0.016 | 0.003 | 16.776 | -0.893 | -0.893 | 0.000 | 0.000 | 0.000 | 0.000 |
| 13 | A | 12 | LYS | 1 | 0.897 | 0.954 | 11.928 | 20.737 | 20.737 | 0.000 | 0.000 | 0.000 | 0.000 |
| 14 | A | 13 | LEU | 0 | 0.016 | 0.034 | 14.247 | -0.158 | -0.158 | 0.000 | 0.000 | 0.000 | 0.000 |
| 15 | A | 14 | LEU | 0 | -0.009 | -0.018 | 9.024 | -1.673 | -1.673 | 0.000 | 0.000 | 0.000 | 0.000 |
| 16 | A | 15 | GLU | -1 | -0.858 | -0.940 | 8.409 | -26.397 | -26.397 | 0.000 | 0.000 | 0.000 | 0.000 |
| 17 | A | 16 | PRO | 0 | 0.001 | 0.013 | 5.836 | -8.209 | -8.209 | 0.000 | 0.000 | 0.000 | 0.000 |
| 20 | A | 19 | PHE | 0 | -0.058 | -0.031 | 5.024 | -4.341 | -4.341 | 0.000 | 0.000 | 0.000 | 0.000 |
| 21 | A | 20 | GLY | 0 | 0.023 | 0.012 | 9.625 | 1.611 | 1.611 | 0.000 | 0.000 | 0.000 | 0.000 |
| 22 | A | 21 | ASP | -1 | -0.830 | -0.904 | 13.099 | -18.892 | -18.892 | 0.000 | 0.000 | 0.000 | 0.000 |
| 23 | A | 22 | ASP | -1 | -0.904 | -0.946 | 16.315 | -14.651 | -14.651 | 0.000 | 0.000 | 0.000 | 0.000 |
| 24 | A | 23 | ARG | 1 | 0.833 | 0.899 | 18.575 | 16.414 | 16.414 | 0.000 | 0.000 | 0.000 | 0.000 |
| 25 | A | 24 | GLY | 0 | 0.016 | 0.017 | 17.884 | 0.429 | 0.429 | 0.000 | 0.000 | 0.000 | 0.000 |
| 26 | A | 25 | PHE | 0 | -0.037 | -0.030 | 11.878 | -0.859 | -0.859 | 0.000 | 0.000 | 0.000 | 0.000 |
| 27 | A | 26 | PHE | 0 | 0.052 | 0.039 | 8.006 | 0.761 | 0.761 | 0.000 | 0.000 | 0.000 | 0.000 |
| 28 | A | 27 | THR | 0 | -0.047 | -0.069 | 6.907 | -2.186 | -2.186 | 0.000 | 0.000 | 0.000 | 0.000 |
| 29 | A | 28 | GLU | -1 | -0.876 | -0.909 | 4.929 | -42.774 | -42.774 | 0.000 | 0.000 | 0.000 | 0.000 |
| 30 | A | 29 | SER | 0 | -0.009 | -0.006 | 6.500 | -3.302 | -3.302 | 0.000 | 0.000 | 0.000 | 0.000 |
| 31 | A | 30 | TYR | 0 | 0.055 | 0.018 | 8.546 | 1.180 | 1.180 | 0.000 | 0.000 | 0.000 | 0.000 |
| 33 | A | 32 | LYS | 1 | 0.944 | 0.979 | 6.502 | 16.669 | 16.669 | 0.000 | 0.000 | 0.000 | 0.000 |
| 34 | A | 33 | LYS | 1 | 1.030 | 1.016 | 6.299 | 34.371 | 34.371 | 0.000 | 0.000 | 0.000 | 0.000 |
| 37 | A | 36 | GLU | -1 | -0.896 | -0.943 | 7.641 | -20.116 | -20.116 | 0.000 | 0.000 | 0.000 | 0.000 |
| 38 | A | 37 | THR | 0 | -0.088 | -0.057 | 5.854 | -0.546 | -0.546 | 0.000 | 0.000 | 0.000 | 0.000 |
| 39 | A | 38 | LEU | 0 | -0.064 | -0.025 | 5.159 | 0.243 | 0.243 | 0.000 | 0.000 | 0.000 | 0.000 |
| 40 | A | 39 | GLY | 0 | 0.021 | 0.008 | 8.524 | 1.776 | 1.776 | 0.000 | 0.000 | 0.000 | 0.000 |
| 41 | A | 40 | VAL | 0 | -0.071 | -0.032 | 10.416 | 1.582 | 1.582 | 0.000 | 0.000 | 0.000 | 0.000 |
| 42 | A | 41 | THR | 0 | 0.024 | 0.005 | 11.682 | -0.965 | -0.965 | 0.000 | 0.000 | 0.000 | 0.000 |
| 43 | A | 42 | HIS | 0 | 0.032 | 0.017 | 13.378 | 0.437 | 0.437 | 0.000 | 0.000 | 0.000 | 0.000 |
| 44 | A | 43 | SER | 0 | -0.037 | -0.025 | 14.146 | -1.224 | -1.224 | 0.000 | 0.000 | 0.000 | 0.000 |
| 45 | A | 44 | PHE | 0 | 0.002 | -0.012 | 12.886 | 0.550 | 0.550 | 0.000 | 0.000 | 0.000 | 0.000 |
| 46 | A | 45 | VAL | 0 | -0.007 | 0.006 | 17.422 | -0.119 | -0.119 | 0.000 | 0.000 | 0.000 | 0.000 |
| 47 | A | 46 | GLN | 0 | 0.019 | 0.000 | 20.503 | 0.698 | 0.698 | 0.000 | 0.000 | 0.000 | 0.000 |
| 48 | A | 47 | ASP | -1 | -0.845 | -0.904 | 17.489 | -17.581 | -17.581 | 0.000 | 0.000 | 0.000 | 0.000 |
| 49 | A | 48 | ASN | 0 | -0.013 | 0.009 | 20.357 | 1.152 | 1.152 | 0.000 | 0.000 | 0.000 | 0.000 |
| 50 | A | 49 | VAL | 0 | 0.004 | -0.013 | 21.257 | -0.737 | -0.737 | 0.000 | 0.000 | 0.000 | 0.000 |
| 51 | A | 50 | SER | 0 | -0.025 | -0.006 | 23.465 | 0.705 | 0.705 | 0.000 | 0.000 | 0.000 | 0.000 |
| 52 | A | 51 | TYR | 0 | 0.028 | -0.003 | 25.455 | -0.277 | -0.277 | 0.000 | 0.000 | 0.000 | 0.000 |
| 53 | A | 52 | SER | 0 | -0.017 | -0.019 | 27.663 | 0.437 | 0.437 | 0.000 | 0.000 | 0.000 | 0.000 |
| 54 | A | 53 | ALA | 0 | 0.036 | 0.032 | 29.660 | -0.216 | -0.216 | 0.000 | 0.000 | 0.000 | 0.000 |
| 55 | A | 54 | GLU | -1 | -0.874 | -0.926 | 32.227 | -8.648 | -8.648 | 0.000 | 0.000 | 0.000 | 0.000 |
| 56 | A | 55 | ALA | 0 | -0.015 | 0.007 | 31.085 | -0.295 | -0.295 | 0.000 | 0.000 | 0.000 | 0.000 |
| 57 | A | 56 | GLY | 0 | 0.053 | 0.010 | 31.489 | 0.333 | 0.333 | 0.000 | 0.000 | 0.000 | 0.000 |
| 58 | A | 57 | THR | 0 | -0.043 | -0.022 | 30.902 | 0.339 | 0.339 | 0.000 | 0.000 | 0.000 | 0.000 |
| 59 | A | 58 | ILE | 0 | -0.023 | -0.015 | 30.583 | -0.413 | -0.413 | 0.000 | 0.000 | 0.000 | 0.000 |
| 60 | A | 59 | ARG | 1 | 0.846 | 0.929 | 27.942 | 10.523 | 10.523 | 0.000 | 0.000 | 0.000 | 0.000 |
| 61 | A | 60 | GLY | 0 | 0.005 | 0.010 | 28.810 | -0.442 | -0.442 | 0.000 | 0.000 | 0.000 | 0.000 |
| 62 | A | 61 | LEU | 0 | -0.011 | -0.003 | 28.239 | 0.180 | 0.180 | 0.000 | 0.000 | 0.000 | 0.000 |
| 63 | A | 62 | HIS | 0 | 0.030 | 0.030 | 27.171 | -0.080 | -0.080 | 0.000 | 0.000 | 0.000 | 0.000 |
| 64 | A | 63 | PHE | 0 | 0.027 | -0.014 | 27.662 | -0.318 | -0.318 | 0.000 | 0.000 | 0.000 | 0.000 |
| 65 | A | 64 | GLN | 0 | -0.064 | -0.022 | 27.655 | 0.442 | 0.442 | 0.000 | 0.000 | 0.000 | 0.000 |
| 66 | A | 65 | LYS | 1 | 0.875 | 0.927 | 28.939 | 8.672 | 8.672 | 0.000 | 0.000 | 0.000 | 0.000 |
| 67 | A | 66 | ASN | 0 | 0.039 | 0.006 | 28.514 | -0.213 | -0.213 | 0.000 | 0.000 | 0.000 | 0.000 |
| 68 | A | 67 | PRO | 0 | -0.037 | -0.024 | 31.332 | 0.282 | 0.282 | 0.000 | 0.000 | 0.000 | 0.000 |
| 69 | A | 68 | LYS | 1 | 0.931 | 0.983 | 28.678 | 8.998 | 8.998 | 0.000 | 0.000 | 0.000 | 0.000 |
| 70 | A | 69 | ALA | 0 | 0.033 | 0.032 | 26.572 | -0.171 | -0.171 | 0.000 | 0.000 | 0.000 | 0.000 |
| 71 | A | 70 | GLN | 0 | -0.051 | -0.036 | 22.845 | -0.274 | -0.274 | 0.000 | 0.000 | 0.000 | 0.000 |
| 72 | A | 71 | THR | 0 | -0.059 | -0.036 | 17.222 | 0.129 | 0.129 | 0.000 | 0.000 | 0.000 | 0.000 |
| 73 | A | 72 | LYS | 1 | 0.828 | 0.898 | 18.888 | 12.732 | 12.732 | 0.000 | 0.000 | 0.000 | 0.000 |
| 74 | A | 73 | LEU | 0 | -0.013 | -0.001 | 11.144 | -0.612 | -0.612 | 0.000 | 0.000 | 0.000 | 0.000 |
| 75 | A | 74 | ILE | 0 | -0.006 | 0.003 | 15.699 | 0.232 | 0.232 | 0.000 | 0.000 | 0.000 | 0.000 |
| 76 | A | 75 | GLN | 0 | 0.038 | 0.004 | 13.188 | -2.558 | -2.558 | 0.000 | 0.000 | 0.000 | 0.000 |
| 77 | A | 76 | VAL | 0 | -0.017 | -0.003 | 16.374 | 1.140 | 1.140 | 0.000 | 0.000 | 0.000 | 0.000 |
| 78 | A | 77 | MET | 0 | -0.037 | -0.013 | 15.500 | -1.131 | -1.131 | 0.000 | 0.000 | 0.000 | 0.000 |
| 79 | A | 78 | GLN | 0 | -0.008 | -0.018 | 18.831 | -0.114 | -0.114 | 0.000 | 0.000 | 0.000 | 0.000 |
| 80 | A | 79 | GLY | 0 | 0.056 | 0.038 | 21.951 | 0.267 | 0.267 | 0.000 | 0.000 | 0.000 | 0.000 |
| 81 | A | 80 | ALA | 0 | 0.002 | -0.019 | 21.765 | -0.845 | -0.845 | 0.000 | 0.000 | 0.000 | 0.000 |
| 82 | A | 81 | ILE | 0 | -0.022 | -0.003 | 21.111 | 0.732 | 0.732 | 0.000 | 0.000 | 0.000 | 0.000 |
| 83 | A | 82 | TYR | 0 | 0.033 | 0.017 | 22.967 | -0.724 | -0.724 | 0.000 | 0.000 | 0.000 | 0.000 |
| 84 | A | 83 | ASP | -1 | -0.812 | -0.916 | 21.417 | -13.889 | -13.889 | 0.000 | 0.000 | 0.000 | 0.000 |
| 85 | A | 84 | VAL | 0 | 0.030 | 0.012 | 23.550 | -0.212 | -0.212 | 0.000 | 0.000 | 0.000 | 0.000 |
| 86 | A | 85 | ILE | 0 | -0.026 | -0.012 | 20.627 | 0.009 | 0.009 | 0.000 | 0.000 | 0.000 | 0.000 |
| 87 | A | 86 | VAL | 0 | 0.033 | 0.006 | 24.675 | 0.077 | 0.077 | 0.000 | 0.000 | 0.000 | 0.000 |
| 88 | A | 87 | ASP | -1 | -0.723 | -0.807 | 26.003 | -11.818 | -11.818 | 0.000 | 0.000 | 0.000 | 0.000 |
| 89 | A | 88 | LEU | 0 | 0.004 | -0.007 | 27.328 | 0.444 | 0.444 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90 | A | 89 | ARG | 1 | 0.757 | 0.840 | 22.997 | 12.914 | 12.914 | 0.000 | 0.000 | 0.000 | 0.000 |
| 91 | A | 90 | LYS | 1 | 0.981 | 0.982 | 29.935 | 8.109 | 8.109 | 0.000 | 0.000 | 0.000 | 0.000 |
| 92 | A | 91 | ASP | -1 | -0.923 | -0.960 | 31.218 | -9.258 | -9.258 | 0.000 | 0.000 | 0.000 | 0.000 |
| 93 | A | 92 | SER | 0 | -0.072 | -0.039 | 27.159 | -0.112 | -0.112 | 0.000 | 0.000 | 0.000 | 0.000 |
| 94 | A | 93 | PRO | 0 | -0.004 | -0.005 | 27.602 | 0.267 | 0.267 | 0.000 | 0.000 | 0.000 | 0.000 |
| 95 | A | 94 | THR | 0 | -0.053 | -0.040 | 25.780 | -0.050 | -0.050 | 0.000 | 0.000 | 0.000 | 0.000 |
| 96 | A | 95 | PHE | 0 | 0.017 | 0.012 | 28.622 | 0.008 | 0.008 | 0.000 | 0.000 | 0.000 | 0.000 |
| 97 | A | 96 | LYS | 1 | 0.888 | 0.956 | 30.883 | 8.825 | 8.825 | 0.000 | 0.000 | 0.000 | 0.000 |
| 98 | A | 97 | GLN | 0 | -0.018 | 0.007 | 28.054 | -0.330 | -0.330 | 0.000 | 0.000 | 0.000 | 0.000 |
| 99 | A | 98 | TRP | 0 | 0.011 | -0.004 | 26.861 | -0.473 | -0.473 | 0.000 | 0.000 | 0.000 | 0.000 |
| 100 | A | 99 | ARG | 1 | 0.796 | 0.873 | 20.388 | 14.946 | 14.946 | 0.000 | 0.000 | 0.000 | 0.000 |
| 101 | A | 100 | GLY | 0 | 0.043 | 0.029 | 24.324 | -0.031 | -0.031 | 0.000 | 0.000 | 0.000 | 0.000 |
| 102 | A | 101 | TYR | 0 | -0.021 | -0.023 | 19.129 | -0.505 | -0.505 | 0.000 | 0.000 | 0.000 | 0.000 |
| 103 | A | 102 | ILE | 0 | 0.013 | 0.007 | 20.778 | 0.381 | 0.381 | 0.000 | 0.000 | 0.000 | 0.000 |
| 104 | A | 103 | LEU | 0 | -0.023 | 0.004 | 16.442 | -1.069 | -1.069 | 0.000 | 0.000 | 0.000 | 0.000 |
| 105 | A | 104 | SER | 0 | 0.010 | -0.018 | 17.672 | 1.076 | 1.076 | 0.000 | 0.000 | 0.000 | 0.000 |
| 106 | A | 105 | ALA | 0 | 0.043 | 0.030 | 17.013 | -1.142 | -1.142 | 0.000 | 0.000 | 0.000 | 0.000 |
| 107 | A | 106 | ASP | -1 | -0.916 | -0.958 | 16.514 | -16.814 | -16.814 | 0.000 | 0.000 | 0.000 | 0.000 |
| 108 | A | 107 | ASN | 0 | -0.037 | -0.032 | 14.921 | -1.465 | -1.465 | 0.000 | 0.000 | 0.000 | 0.000 |
| 109 | A | 108 | HIS | 1 | 0.877 | 0.944 | 11.559 | 20.137 | 20.137 | 0.000 | 0.000 | 0.000 | 0.000 |
| 110 | A | 109 | ARG | 1 | 0.900 | 0.971 | 12.090 | 20.948 | 20.948 | 0.000 | 0.000 | 0.000 | 0.000 |
| 111 | A | 110 | GLN | 0 | -0.037 | -0.046 | 10.696 | 0.768 | 0.768 | 0.000 | 0.000 | 0.000 | 0.000 |
| 112 | A | 111 | LEU | 0 | -0.018 | 0.004 | 13.636 | -0.619 | -0.619 | 0.000 | 0.000 | 0.000 | 0.000 |
| 113 | A | 112 | LEU | 0 | -0.032 | -0.005 | 13.245 | 0.366 | 0.366 | 0.000 | 0.000 | 0.000 | 0.000 |
| 114 | A | 113 | VAL | 0 | 0.020 | -0.002 | 15.302 | 0.415 | 0.415 | 0.000 | 0.000 | 0.000 | 0.000 |
| 115 | A | 114 | PRO | 0 | 0.020 | 0.010 | 19.010 | 0.026 | 0.026 | 0.000 | 0.000 | 0.000 | 0.000 |
| 116 | A | 115 | LYS | 1 | 0.900 | 0.946 | 20.407 | 13.417 | 13.417 | 0.000 | 0.000 | 0.000 | 0.000 |
| 117 | A | 116 | GLY | 0 | -0.005 | -0.010 | 23.572 | 0.022 | 0.022 | 0.000 | 0.000 | 0.000 | 0.000 |
| 118 | A | 117 | PHE | 0 | -0.009 | -0.005 | 23.121 | 0.110 | 0.110 | 0.000 | 0.000 | 0.000 | 0.000 |
| 119 | A | 118 | ALA | 0 | -0.011 | 0.012 | 25.877 | 0.137 | 0.137 | 0.000 | 0.000 | 0.000 | 0.000 |
| 120 | A | 119 | HIS | 0 | -0.058 | -0.057 | 22.267 | -0.070 | -0.070 | 0.000 | 0.000 | 0.000 | 0.000 |
| 121 | A | 120 | GLY | 0 | 0.054 | 0.026 | 25.395 | 0.412 | 0.412 | 0.000 | 0.000 | 0.000 | 0.000 |
| 122 | A | 121 | PHE | 0 | -0.033 | -0.006 | 24.204 | -0.309 | -0.309 | 0.000 | 0.000 | 0.000 | 0.000 |
| 123 | A | 122 | CYS | 0 | 0.019 | 0.019 | 26.537 | 0.602 | 0.602 | 0.000 | 0.000 | 0.000 | 0.000 |
| 124 | A | 123 | THR | 0 | -0.037 | -0.025 | 27.008 | -0.439 | -0.439 | 0.000 | 0.000 | 0.000 | 0.000 |
| 125 | A | 124 | LEU | 0 | -0.008 | -0.002 | 24.792 | 0.395 | 0.395 | 0.000 | 0.000 | 0.000 | 0.000 |
| 126 | A | 125 | VAL | 0 | -0.010 | 0.001 | 26.204 | 0.267 | 0.267 | 0.000 | 0.000 | 0.000 | 0.000 |
| 127 | A | 126 | PRO | 0 | 0.019 | 0.005 | 28.807 | -0.155 | -0.155 | 0.000 | 0.000 | 0.000 | 0.000 |
| 128 | A | 127 | HIS | 0 | -0.009 | 0.016 | 28.750 | -0.476 | -0.476 | 0.000 | 0.000 | 0.000 | 0.000 |
| 129 | A | 128 | THR | 0 | 0.026 | 0.015 | 23.902 | -0.574 | -0.574 | 0.000 | 0.000 | 0.000 | 0.000 |
| 130 | A | 129 | ILE | 0 | -0.047 | -0.026 | 22.252 | 0.395 | 0.395 | 0.000 | 0.000 | 0.000 | 0.000 |
| 131 | A | 130 | VAL | 0 | 0.038 | 0.024 | 20.839 | -0.791 | -0.791 | 0.000 | 0.000 | 0.000 | 0.000 |
| 132 | A | 131 | MET | 0 | -0.006 | 0.001 | 17.205 | 0.053 | 0.053 | 0.000 | 0.000 | 0.000 | 0.000 |
| 133 | A | 132 | TYR | 0 | 0.003 | -0.010 | 17.776 | -0.560 | -0.560 | 0.000 | 0.000 | 0.000 | 0.000 |
| 134 | A | 133 | LYS | 1 | 0.860 | 0.937 | 13.210 | 19.480 | 19.480 | 0.000 | 0.000 | 0.000 | 0.000 |
| 135 | A | 134 | VAL | 0 | 0.003 | -0.005 | 17.885 | -0.107 | -0.107 | 0.000 | 0.000 | 0.000 | 0.000 |
| 136 | A | 135 | ASP | -1 | -0.799 | -0.895 | 18.520 | -14.281 | -14.281 | 0.000 | 0.000 | 0.000 | 0.000 |
| 137 | A | 136 | GLU | -1 | -0.853 | -0.917 | 20.192 | -10.831 | -10.831 | 0.000 | 0.000 | 0.000 | 0.000 |
| 138 | A | 137 | TYR | 0 | 0.012 | 0.006 | 24.016 | -0.144 | -0.144 | 0.000 | 0.000 | 0.000 | 0.000 |
| 139 | A | 138 | TYR | 0 | -0.103 | -0.065 | 26.214 | 0.243 | 0.243 | 0.000 | 0.000 | 0.000 | 0.000 |
| 140 | A | 139 | SER | 0 | -0.002 | -0.010 | 28.366 | 0.331 | 0.331 | 0.000 | 0.000 | 0.000 | 0.000 |
| 141 | A | 140 | ALA | 0 | 0.016 | -0.004 | 31.843 | 0.026 | 0.026 | 0.000 | 0.000 | 0.000 | 0.000 |
| 142 | A | 141 | ASP | -1 | -0.926 | -0.952 | 34.543 | -8.122 | -8.122 | 0.000 | 0.000 | 0.000 | 0.000 |
| 143 | A | 142 | HIS | 0 | 0.011 | 0.009 | 32.205 | -0.085 | -0.085 | 0.000 | 0.000 | 0.000 | 0.000 |
| 144 | A | 143 | ASP | -1 | -0.815 | -0.884 | 31.648 | -10.000 | -10.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 145 | A | 144 | SER | 0 | -0.002 | -0.010 | 32.045 | 0.414 | 0.414 | 0.000 | 0.000 | 0.000 | 0.000 |
| 146 | A | 145 | GLY | 0 | 0.031 | 0.000 | 31.809 | -0.366 | -0.366 | 0.000 | 0.000 | 0.000 | 0.000 |
| 147 | A | 146 | VAL | 0 | -0.016 | 0.003 | 32.630 | 0.180 | 0.180 | 0.000 | 0.000 | 0.000 | 0.000 |
| 148 | A | 147 | LEU | 0 | -0.020 | 0.003 | 33.639 | -0.244 | -0.244 | 0.000 | 0.000 | 0.000 | 0.000 |
| 149 | A | 148 | TRP | 0 | 0.048 | 0.014 | 33.463 | -0.136 | -0.136 | 0.000 | 0.000 | 0.000 | 0.000 |
| 150 | A | 149 | ASN | 0 | -0.024 | -0.007 | 34.489 | -0.210 | -0.210 | 0.000 | 0.000 | 0.000 | 0.000 |
| 151 | A | 150 | ASP | -1 | -0.738 | -0.874 | 35.764 | -8.271 | -8.271 | 0.000 | 0.000 | 0.000 | 0.000 |
| 152 | A | 151 | LYS | 1 | 0.923 | 0.941 | 37.195 | 7.161 | 7.161 | 0.000 | 0.000 | 0.000 | 0.000 |
| 153 | A | 152 | GLU | -1 | -0.912 | -0.949 | 37.344 | -8.075 | -8.075 | 0.000 | 0.000 | 0.000 | 0.000 |
| 154 | A | 153 | LEU | 0 | -0.046 | -0.020 | 31.830 | -0.200 | -0.200 | 0.000 | 0.000 | 0.000 | 0.000 |
| 155 | A | 154 | ALA | 0 | -0.036 | -0.017 | 34.044 | -0.169 | -0.169 | 0.000 | 0.000 | 0.000 | 0.000 |
| 156 | A | 155 | ILE | 0 | -0.001 | 0.013 | 30.394 | -0.134 | -0.134 | 0.000 | 0.000 | 0.000 | 0.000 |
| 157 | A | 156 | PRO | 0 | -0.025 | -0.003 | 31.044 | 0.211 | 0.211 | 0.000 | 0.000 | 0.000 | 0.000 |
| 158 | A | 157 | TRP | 0 | -0.024 | -0.031 | 28.218 | -0.491 | -0.491 | 0.000 | 0.000 | 0.000 | 0.000 |
| 159 | A | 158 | PRO | 0 | -0.031 | -0.015 | 29.458 | 0.276 | 0.276 | 0.000 | 0.000 | 0.000 | 0.000 |
| 160 | A | 159 | VAL | 0 | -0.009 | -0.018 | 32.645 | 0.093 | 0.093 | 0.000 | 0.000 | 0.000 | 0.000 |
| 161 | A | 160 | THR | 0 | 0.003 | 0.011 | 35.608 | -0.009 | -0.009 | 0.000 | 0.000 | 0.000 | 0.000 |
| 162 | A | 161 | SER | 0 | -0.040 | -0.033 | 38.974 | 0.211 | 0.211 | 0.000 | 0.000 | 0.000 | 0.000 |
| 163 | A | 162 | PRO | 0 | 0.017 | 0.028 | 35.288 | 0.033 | 0.033 | 0.000 | 0.000 | 0.000 | 0.000 |
| 164 | A | 163 | ILE | 0 | 0.014 | 0.014 | 35.326 | 0.251 | 0.251 | 0.000 | 0.000 | 0.000 | 0.000 |
| 165 | A | 164 | LEU | 0 | 0.007 | 0.002 | 34.267 | -0.292 | -0.292 | 0.000 | 0.000 | 0.000 | 0.000 |
| 166 | A | 165 | SER | 0 | -0.060 | -0.064 | 35.583 | 0.314 | 0.314 | 0.000 | 0.000 | 0.000 | 0.000 |
| 167 | A | 166 | ASP | -1 | -0.834 | -0.939 | 37.423 | -7.572 | -7.572 | 0.000 | 0.000 | 0.000 | 0.000 |
| 168 | A | 167 | LYS | 1 | 0.917 | 0.958 | 34.587 | 8.958 | 8.958 | 0.000 | 0.000 | 0.000 | 0.000 |
| 169 | A | 168 | ASP | -1 | -0.808 | -0.887 | 32.895 | -9.471 | -9.471 | 0.000 | 0.000 | 0.000 | 0.000 |
| 170 | A | 169 | ARG | 1 | 0.849 | 0.928 | 36.130 | 7.999 | 7.999 | 0.000 | 0.000 | 0.000 | 0.000 |
| 171 | A | 170 | ILE | 0 | -0.010 | 0.001 | 39.350 | 0.181 | 0.181 | 0.000 | 0.000 | 0.000 | 0.000 |
| 172 | A | 171 | LEU | 0 | -0.058 | 0.004 | 33.616 | 0.030 | 0.030 | 0.000 | 0.000 | 0.000 | 0.000 |
| 173 | A | 172 | PRO | 0 | -0.016 | -0.001 | 36.701 | 0.153 | 0.153 | 0.000 | 0.000 | 0.000 | 0.000 |
| 174 | A | 173 | LEU | 0 | -0.023 | -0.022 | 37.556 | -0.181 | -0.181 | 0.000 | 0.000 | 0.000 | 0.000 |
| 175 | A | 174 | LEU | -1 | -0.959 | -0.967 | 33.515 | -8.545 | -8.545 | 0.000 | 0.000 | 0.000 | 0.000 |