FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: L76N9

Calculation Name: 1TS9-A-Xray540

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 1TS9

Chain ID: A

ChEMBL ID:

UniProt ID: O28362

Base Structure: X-ray

Registration Date: 2025-07-08

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 184
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -751760.396036
FMO2-HF: Nuclear repulsion 712040.244874
FMO2-HF: Total energy -39720.151162
FMO2-MP2: Total energy -39834.606184


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:5:LEU)


Summations of interaction energy for fragment #1(A:5:LEU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-4.721-1.4250.078-1.542-1.8340.005
Interaction energy analysis for fragmet #1(A:5:LEU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.177 / q_NPA : 0.043
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4A6GLN0-0.0580.1104.276-0.0490.316-0.001-0.115-0.2500.000
5A7GLY00.001-0.0983.189-2.865-0.8650.010-1.089-0.9210.005
6A8VAL00.113-0.0103.586-0.438-0.0410.004-0.143-0.2590.000
7A8VAL0-0.0980.1133.180-0.3530.0790.068-0.168-0.3310.000
8A9GLU00.127-0.0845.0600.1930.1930.0000.0000.0000.000
9A9GLU-1-0.856-0.7456.092-1.180-1.1800.0000.0000.0000.000
10A10LEU0-0.001-0.1137.061-0.006-0.0060.0000.0000.0000.000
11A10LEU0-0.0310.1098.0490.0620.0620.0000.0000.0000.000
12A11ILE00.095-0.0788.5040.0700.0700.0000.0000.0000.000
13A11ILE0-0.0950.0837.8460.0050.0050.0000.0000.0000.000
14A12ALA00.122-0.0839.7600.0620.0620.0000.0000.0000.000
15A12ALA0-0.1100.08810.165-0.028-0.0280.0000.0000.0000.000
16A13ARG00.071-0.08511.1010.0060.0060.0000.0000.0000.000
17A13ARG10.7340.98211.6220.0510.0510.0000.0000.0000.000
18A14ASP00.058-0.08613.0700.0580.0580.0000.0000.0000.000
19A14ASP-1-0.846-0.81117.055-0.049-0.0490.0000.0000.0000.000
20A15TRP0-0.025-0.10814.674-0.019-0.0190.0000.0000.0000.000
21A15TRP0-0.1340.03611.8400.0460.0460.0000.0000.0000.000
22A16ILE00.148-0.11016.2610.0380.0380.0000.0000.0000.000
23A16ILE0-0.0850.13320.044-0.001-0.0010.0000.0000.0000.000
24A17GLY00.009-0.09318.374-0.027-0.0270.0000.0000.0000.000
25A18LEU00.003-0.02416.008-0.015-0.0150.0000.0000.0000.000
26A18LEU0-0.0700.09713.2900.0130.0130.0000.0000.0000.000
27A19MET00.151-0.07317.295-0.013-0.0130.0000.0000.0000.000
28A19MET0-0.1190.10517.648-0.002-0.0020.0000.0000.0000.000
29A20VAL0-0.014-0.13216.0890.0710.0710.0000.0000.0000.000
30A20VAL0-0.0400.10915.5560.0040.0040.0000.0000.0000.000
31A21GLU00.237-0.07117.289-0.048-0.0480.0000.0000.0000.000
32A21GLU-1-0.891-0.77918.0090.4000.4000.0000.0000.0000.000
33A22VAL0-0.007-0.12517.9060.0650.0650.0000.0000.0000.000
34A22VAL0-0.0740.12220.805-0.004-0.0040.0000.0000.0000.000
35A23VAL00.034-0.09718.328-0.032-0.0320.0000.0000.0000.000
36A23VAL0-0.1320.07716.2000.0120.0120.0000.0000.0000.000
37A24GLU00.104-0.12119.533-0.007-0.0070.0000.0000.0000.000
38A24GLU-1-0.807-0.73716.9450.4620.4620.0000.0000.0000.000
39A25SER00.048-0.09020.6130.0130.0130.0000.0000.0000.000
40A25SER0-0.0020.06323.034-0.006-0.0060.0000.0000.0000.000
41A26PRO0-0.087-0.09423.200-0.004-0.0040.0000.0000.0000.000
42A27ASN00.1480.05526.198-0.012-0.0120.0000.0000.0000.000
43A27ASN0-0.1350.06627.313-0.004-0.0040.0000.0000.0000.000
44A28HIS00.117-0.10127.0850.0110.0110.0000.0000.0000.000
45A28HIS0-0.0290.11727.619-0.006-0.0060.0000.0000.0000.000
46A29SER00.042-0.09027.9120.0120.0120.0000.0000.0000.000
47A29SER0-0.0570.06430.450-0.004-0.0040.0000.0000.0000.000
48A30GLU00.023-0.12225.537-0.008-0.0080.0000.0000.0000.000
49A30GLU-1-0.805-0.71524.6340.1740.1740.0000.0000.0000.000
50A31VAL00.085-0.10423.6190.0120.0120.0000.0000.0000.000
51A31VAL0-0.0680.12722.8560.0020.0020.0000.0000.0000.000
52A32GLY0-0.027-0.12023.043-0.014-0.0140.0000.0000.0000.000
53A33ILE00.0780.01124.312-0.008-0.0080.0000.0000.0000.000
54A33ILE0-0.1020.09323.604-0.004-0.0040.0000.0000.0000.000
55A34LYS00.090-0.11821.8130.0250.0250.0000.0000.0000.000
56A34LYS10.7641.03120.009-0.312-0.3120.0000.0000.0000.000
57A35GLY00.006-0.11721.474-0.024-0.0240.0000.0000.0000.000
58A36GLU00.160-0.00720.8130.0380.0380.0000.0000.0000.000
59A36GLU-1-0.955-0.81121.2930.0780.0780.0000.0000.0000.000
60A37VAL00.020-0.12619.913-0.012-0.0120.0000.0000.0000.000
61A37VAL0-0.1170.09318.2230.0050.0050.0000.0000.0000.000
62A38VAL00.084-0.10321.215-0.013-0.0130.0000.0000.0000.000
63A38VAL0-0.0700.12925.056-0.001-0.0010.0000.0000.0000.000
64A39ASP00.116-0.09023.629-0.017-0.0170.0000.0000.0000.000
65A39ASP-1-0.898-0.80925.4830.0430.0430.0000.0000.0000.000
66A40GLU00.063-0.13720.7420.0220.0220.0000.0000.0000.000
67A40GLU-1-0.831-0.74417.6240.1040.1040.0000.0000.0000.000
68A41THR0-0.046-0.07922.203-0.019-0.0190.0000.0000.0000.000
69A41THR0-0.0340.05524.7000.0010.0010.0000.0000.0000.000
70A42GLN00.247-0.04721.4420.0140.0140.0000.0000.0000.000
71A42GLN0-0.1080.10622.054-0.011-0.0110.0000.0000.0000.000
72A43ASN00.000-0.08121.7170.0110.0110.0000.0000.0000.000
73A43ASN0-0.0590.07424.5280.0080.0080.0000.0000.0000.000
74A44THR0-0.014-0.06823.1390.0150.0150.0000.0000.0000.000
75A44THR00.0270.06324.876-0.005-0.0050.0000.0000.0000.000
76A45LEU00.113-0.07220.910-0.016-0.0160.0000.0000.0000.000
77A45LEU0-0.0470.11817.6680.0040.0040.0000.0000.0000.000
78A46LYS00.092-0.08422.1220.0090.0090.0000.0000.0000.000
79A46LYS10.7791.00025.568-0.059-0.0590.0000.0000.0000.000
80A47ILE00.094-0.09123.789-0.008-0.0080.0000.0000.0000.000
81A47ILE0-0.1030.09221.4260.0040.0040.0000.0000.0000.000
82A48MET00.154-0.07924.498-0.003-0.0030.0000.0000.0000.000
83A48MET0-0.0800.11325.814-0.005-0.0050.0000.0000.0000.000
84A49THR0-0.039-0.09625.4880.0120.0120.0000.0000.0000.000
85A49THR0-0.0650.01025.5930.0010.0010.0000.0000.0000.000
86A50GLU00.127-0.10027.103-0.012-0.0120.0000.0000.0000.000
87A50GLU-1-0.949-0.81627.0770.1530.1530.0000.0000.0000.000
88A51LYS0-0.020-0.08629.263-0.008-0.0080.0000.0000.0000.000
89A51LYS10.8031.01730.619-0.123-0.1230.0000.0000.0000.000
90A52GLY00.079-0.08230.878-0.007-0.0070.0000.0000.0000.000
91A53LEU00.0840.01529.2160.0100.0100.0000.0000.0000.000
92A53LEU0-0.0410.12529.158-0.001-0.0010.0000.0000.0000.000
93A54LYS00.008-0.12127.438-0.005-0.0050.0000.0000.0000.000
94A54LYS10.9151.09026.656-0.122-0.1220.0000.0000.0000.000
95A55VAL00.104-0.07526.144-0.001-0.0010.0000.0000.0000.000
96A55VAL0-0.0810.09726.382-0.002-0.0020.0000.0000.0000.000
97A56VAL00.017-0.13223.539-0.006-0.0060.0000.0000.0000.000
98A56VAL0-0.0590.12622.3800.0030.0030.0000.0000.0000.000
99A57ALA00.175-0.08723.394-0.003-0.0030.0000.0000.0000.000
100A57ALA0-0.0780.11224.849-0.002-0.0020.0000.0000.0000.000
101A58LYS00.045-0.11819.9640.0200.0200.0000.0000.0000.000
102A58LYS10.6400.96918.129-0.123-0.1230.0000.0000.0000.000
103A59ARG00.145-0.08119.6790.0310.0310.0000.0000.0000.000
104A59ARG10.8061.04421.247-0.113-0.1130.0000.0000.0000.000
105A60GLY0-0.014-0.12120.539-0.015-0.0150.0000.0000.0000.000
106A61ARG0-0.007-0.02319.6850.0050.0050.0000.0000.0000.000
107A61ARG10.7570.97719.604-0.180-0.1800.0000.0000.0000.000
108A62THR00.017-0.08215.8840.0070.0070.0000.0000.0000.000
109A62THR0-0.1000.01314.1380.0010.0010.0000.0000.0000.000
110A63PHE00.073-0.08614.933-0.033-0.0330.0000.0000.0000.000
111A63PHE0-0.0480.11314.943-0.016-0.0160.0000.0000.0000.000
112A64ARG00.113-0.05813.3580.1070.1070.0000.0000.0000.000
113A64ARG10.7860.97713.743-0.512-0.5120.0000.0000.0000.000
114A65VAL00.051-0.10912.274-0.128-0.1280.0000.0000.0000.000
115A65VAL0-0.0510.11511.2160.0040.0040.0000.0000.0000.000
116A66TRP00.095-0.09711.9460.2110.2110.0000.0000.0000.000
117A66TRP0-0.1150.10114.9220.0070.0070.0000.0000.0000.000
118A67TYR00.119-0.09210.326-0.143-0.1430.0000.0000.0000.000
119A67TYR0-0.1030.0537.9690.0360.0360.0000.0000.0000.000
120A68LYS00.022-0.0919.6500.2870.2870.0000.0000.0000.000
121A68LYS10.7550.9958.2920.7830.7830.0000.0000.0000.000
122A69GLY00.084-0.0899.9190.0390.0390.0000.0000.0000.000
123A70LYS00.0600.0378.875-0.102-0.1020.0000.0000.0000.000
124A70LYS10.8351.0146.075-1.333-1.3330.0000.0000.0000.000
125A71ILE00.099-0.09610.364-0.117-0.1170.0000.0000.0000.000
126A71ILE0-0.0750.10312.644-0.017-0.0170.0000.0000.0000.000
127A72MET00.030-0.0988.0330.1390.1390.0000.0000.0000.000
128A72MET0-0.1130.0956.5330.0260.0260.0000.0000.0000.000
129A73ARG00.103-0.0939.430-0.212-0.2120.0000.0000.0000.000
130A73ARG10.8291.01211.431-0.599-0.5990.0000.0000.0000.000
131A74ILE00.028-0.1039.7240.2080.2080.0000.0000.0000.000
132A74ILE0-0.0560.1127.9960.0080.0080.0000.0000.0000.000
133A75LYS00.111-0.09711.209-0.069-0.0690.0000.0000.0000.000
134A75LYS10.8141.05213.660-0.391-0.3910.0000.0000.0000.000
135A76GLY00.003-0.11113.942-0.009-0.0090.0000.0000.0000.000
136A77ASP00.0880.01016.527-0.039-0.0390.0000.0000.0000.000
137A77ASP-1-0.892-0.81716.4140.2590.2590.0000.0000.0000.000
138A78LEU00.012-0.12012.696-0.044-0.0440.0000.0000.0000.000
139A78LEU0-0.0540.10310.2810.0130.0130.0000.0000.0000.000
140A79ILE00.018-0.12314.070-0.042-0.0420.0000.0000.0000.000
141A79ILE0-0.0650.12112.8090.0020.0020.0000.0000.0000.000
142A80ASN00.151-0.03115.533-0.025-0.0250.0000.0000.0000.000
143A80ASN0-0.1440.04519.4100.0200.0200.0000.0000.0000.000
144A81PHE00.039-0.14218.566-0.008-0.0080.0000.0000.0000.000
145A81PHE0-0.0950.09216.545-0.008-0.0080.0000.0000.0000.000
146A82ARG00.101-0.11219.3630.0060.0060.0000.0000.0000.000
147A82ARG10.8171.05921.3800.0160.0160.0000.0000.0000.000
148A83PRO00.072-0.07817.7690.0000.0000.0000.0000.0000.000
149A84GLU00.1050.02117.238-0.025-0.0250.0000.0000.0000.000
150A84GLU-1-0.866-0.80020.955-0.043-0.0430.0000.0000.0000.000
151A85ASP00.087-0.08818.134-0.026-0.0260.0000.0000.0000.000
152A85ASP-1-0.939-0.80218.2370.0100.0100.0000.0000.0000.000
153A86ARG00.100-0.11814.657-0.001-0.0010.0000.0000.0000.000
154A86ARG10.7651.02113.198-0.075-0.0750.0000.0000.0000.000
155A87ILE00.094-0.09412.843-0.002-0.0020.0000.0000.0000.000
156A87ILE0-0.0570.13613.553-0.007-0.0070.0000.0000.0000.000
157A88LYS00.115-0.08412.434-0.059-0.0590.0000.0000.0000.000
158A88LYS10.8911.08316.0450.0850.0850.0000.0000.0000.000
159A89ARG00.004-0.15112.943-0.025-0.0250.0000.0000.0000.000
160A89ARG10.7771.01313.091-0.045-0.0450.0000.0000.0000.000
161A90GLY00.045-0.0848.9630.0620.0620.0000.0000.0000.000
162A91LEU00.1350.0218.216-0.039-0.0390.0000.0000.0000.000
163A91LEU0-0.0830.10910.1990.0000.0000.0000.0000.0000.000
164A92MET00.101-0.1029.942-0.037-0.0370.0000.0000.0000.000
165A92MET0-0.1220.07812.2480.0120.0120.0000.0000.0000.000
166A93MET00.078-0.1118.133-0.008-0.0080.0000.0000.0000.000
167A93MET0-0.0820.1047.317-0.006-0.0060.0000.0000.0000.000
168A94LEU00.106-0.0865.3150.2670.2670.0000.0000.0000.000
169A94LEU0-0.1060.0935.222-0.060-0.0600.0000.0000.0000.000
170A95LYS00.062-0.1176.380-0.064-0.0640.0000.0000.0000.000
171A95LYS10.7901.03110.8690.2050.2050.0000.0000.0000.000
172A96ARG00.102-0.0569.313-0.057-0.0570.0000.0000.0000.000
173A96ARG10.8311.0359.230-0.187-0.1870.0000.0000.0000.000
174A97ALA00.081-0.0794.914-0.144-0.115-0.002-0.004-0.0240.000
175A97ALA0-0.0720.0894.2240.0890.162-0.001-0.023-0.0490.000
176A98LYS0-0.047-0.1475.681-0.133-0.1330.0000.0000.0000.000
177A98LYS10.8321.0615.3361.2651.2650.0000.0000.0000.000
178A99GLY00.085-0.0597.732-0.052-0.0520.0000.0000.0000.000
179A100VAL00.057-0.02110.9140.0170.0170.0000.0000.0000.000
180A100VAL0-0.0960.11010.638-0.014-0.0140.0000.0000.0000.000
181A101TRP00.083-0.08712.5710.0090.0090.0000.0000.0000.000
182A101TRP00.0090.13716.8430.0030.0030.0000.0000.0000.000
183A102ILE0-0.107-0.16013.5050.0070.0070.0000.0000.0000.000
184A102ILE00.1130.06416.7720.0010.0010.0000.0000.0000.000