FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-04-23

All entries: 37539

Number of unique PDB entries: 7791

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FMODB ID: LJ849

Calculation Name: 4HWI-B-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4HWI

Chain ID: B

ChEMBL ID:

UniProt ID: Q0WUQ1

Base Structure: X-ray

Registration Date: 2023-06-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 177
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -1575275.50517
FMO2-HF: Nuclear repulsion 1504586.264244
FMO2-HF: Total energy -70689.240926
FMO2-MP2: Total energy -70893.53391


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(B:66:MET)


Summations of interaction energy for fragment #1(B:66:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-7.169-0.4686.889-5.539-8.051-0.028
Interaction energy analysis for fragmet #1(B:66:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.004 / q_NPA : 0.010
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3B68ARG10.8810.9352.812-1.5241.7540.314-1.450-2.1410.002
4B69VAL00.0140.0064.5910.4370.520-0.001-0.010-0.0720.000
5B70ARG10.8200.8818.0300.8880.8880.0000.0000.0000.000
6B71ILE00.0400.01810.5730.1000.1000.0000.0000.0000.000
7B72LYS10.8860.94913.8460.2460.2460.0000.0000.0000.000
8B73TYR00.002-0.00817.2500.0140.0140.0000.0000.0000.000
9B74GLY00.0730.03319.6980.0020.0020.0000.0000.0000.000
10B75ALA0-0.029-0.02222.138-0.001-0.0010.0000.0000.0000.000
11B76VAL00.0350.03117.248-0.011-0.0110.0000.0000.0000.000
12B77TYR0-0.036-0.02814.453-0.002-0.0020.0000.0000.0000.000
13B78HIS00.0520.03412.865-0.043-0.0430.0000.0000.0000.000
14B79GLU-1-0.844-0.9106.537-1.486-1.4860.0000.0000.0000.000
15B80ILE0-0.0020.0027.1070.0260.0260.0000.0000.0000.000
16B81ASN00.004-0.0062.606-2.828-2.1402.431-1.007-2.112-0.010
17B82ILE00.0240.0143.432-0.3250.6460.054-0.275-0.750-0.002
18B83SER00.0450.0222.137-2.625-0.7883.447-3.114-2.171-0.017
19B84PRO00.012-0.0102.530-0.698-0.9250.6450.319-0.737-0.001
20B85GLN00.017-0.0115.3170.1650.236-0.001-0.002-0.0680.000
21B86ALA00.0140.0336.858-0.026-0.0260.0000.0000.0000.000
22B87SER0-0.020-0.0478.602-0.183-0.1830.0000.0000.0000.000
23B88PHE00.002-0.03211.483-0.052-0.0520.0000.0000.0000.000
24B89GLY00.0200.00713.554-0.034-0.0340.0000.0000.0000.000
25B90GLU-1-0.828-0.86410.0340.4160.4160.0000.0000.0000.000
26B91LEU00.009-0.0018.882-0.045-0.0450.0000.0000.0000.000
27B92LYS10.8370.92011.2560.0610.0610.0000.0000.0000.000
28B93LYS10.8740.94613.739-0.038-0.0380.0000.0000.0000.000
29B94MET0-0.034-0.0166.7200.0290.0290.0000.0000.0000.000
30B95LEU00.0370.01111.868-0.060-0.0600.0000.0000.0000.000
31B96THR0-0.035-0.01114.2550.0130.0130.0000.0000.0000.000
32B97GLY0-0.0200.00915.5280.0150.0150.0000.0000.0000.000
33B98PRO0-0.027-0.01213.2500.0140.0140.0000.0000.0000.000
34B99THR0-0.059-0.05816.3820.0130.0130.0000.0000.0000.000
35B100GLY00.0410.03619.1490.0180.0180.0000.0000.0000.000
36B101ILE0-0.0070.01320.3720.0220.0220.0000.0000.0000.000
37B102HIS00.1060.05719.821-0.016-0.0160.0000.0000.0000.000
38B103HIS00.0310.00417.6490.0080.0080.0000.0000.0000.000
39B104GLN0-0.077-0.04819.2160.0050.0050.0000.0000.0000.000
40B105ASP-1-0.815-0.87922.496-0.069-0.0690.0000.0000.0000.000
41B106GLN00.000-0.01916.925-0.037-0.0370.0000.0000.0000.000
42B107LYS10.8820.93320.2810.1160.1160.0000.0000.0000.000
43B108LEU00.0210.00714.536-0.014-0.0140.0000.0000.0000.000
44B109MET0-0.0370.00218.5460.0350.0350.0000.0000.0000.000
45B110TYR0-0.030-0.04314.229-0.056-0.0560.0000.0000.0000.000
46B111LYS10.9530.97117.7530.2610.2610.0000.0000.0000.000
47B112ASP-1-0.850-0.91520.084-0.168-0.1680.0000.0000.0000.000
48B113LYS10.9150.97021.2460.1130.1130.0000.0000.0000.000
49B114GLU-1-0.744-0.87720.614-0.114-0.1140.0000.0000.0000.000
50B115ARG10.7610.89216.6120.1970.1970.0000.0000.0000.000
51B116ASP-1-0.760-0.86918.849-0.015-0.0150.0000.0000.0000.000
52B117SER00.0420.00517.019-0.012-0.0120.0000.0000.0000.000
53B118LYS10.8730.91616.3970.0120.0120.0000.0000.0000.000
54B119ALA0-0.0260.01216.3060.0220.0220.0000.0000.0000.000
55B120PHE00.0600.02511.617-0.024-0.0240.0000.0000.0000.000
56B121LEU0-0.008-0.0017.446-0.093-0.0930.0000.0000.0000.000
57B122ASP-1-0.763-0.8758.6700.0270.0270.0000.0000.0000.000
58B123VAL0-0.017-0.00710.454-0.030-0.0300.0000.0000.0000.000
59B124SER0-0.066-0.02913.419-0.007-0.0070.0000.0000.0000.000
60B125GLY0-0.017-0.01413.708-0.015-0.0150.0000.0000.0000.000
61B126VAL0-0.083-0.0199.110-0.038-0.0380.0000.0000.0000.000
62B127LYS10.9770.9759.0520.3630.3630.0000.0000.0000.000
63B128ASP-1-0.706-0.8185.271-1.605-1.6050.0000.0000.0000.000
64B129LYS10.8020.8837.5001.0721.0720.0000.0000.0000.000
65B130SER0-0.0010.0079.1610.1330.1330.0000.0000.0000.000
66B131LYS10.9570.98511.3160.3280.3280.0000.0000.0000.000
67B132MET0-0.043-0.02213.1100.0220.0220.0000.0000.0000.000
68B133VAL0-0.031-0.00515.503-0.011-0.0110.0000.0000.0000.000
69B134LEU00.0000.00517.3750.0070.0070.0000.0000.0000.000
70B135ILE0-0.039-0.02319.2270.0040.0040.0000.0000.0000.000
71B136GLU-1-0.831-0.91022.766-0.132-0.1320.0000.0000.0000.000
72B137ASP-1-0.849-0.94224.493-0.074-0.0740.0000.0000.0000.000
73B138PRO00.0480.01926.7420.0070.0070.0000.0000.0000.000
74B139LEU00.0130.01029.5070.0080.0080.0000.0000.0000.000
75B140SER0-0.036-0.03126.0420.0090.0090.0000.0000.0000.000
76B141GLN00.0120.00427.8800.0110.0110.0000.0000.0000.000
77B142GLU-1-0.865-0.93030.071-0.021-0.0210.0000.0000.0000.000
78B143LYS10.8270.91625.3550.0810.0810.0000.0000.0000.000
79B144ARG10.9000.94526.4070.0110.0110.0000.0000.0000.000
80B145PHE00.016-0.01628.3760.0080.0080.0000.0000.0000.000
81B146LEU0-0.026-0.00431.6940.0050.0050.0000.0000.0000.000
82B147GLU-1-0.817-0.90126.768-0.025-0.0250.0000.0000.0000.000
83B148MET0-0.031-0.01328.6000.0080.0080.0000.0000.0000.000
84B149ARG10.9751.00130.4780.0180.0180.0000.0000.0000.000
85B150LYS10.8180.89330.0130.0290.0290.0000.0000.0000.000
86B151ILE0-0.008-0.00726.8450.0020.0020.0000.0000.0000.000
87B152ALA00.0170.01231.2250.0040.0040.0000.0000.0000.000
88B153LYS10.8250.89734.2090.0010.0010.0000.0000.0000.000
89B154THR0-0.009-0.01532.3830.0000.0000.0000.0000.0000.000
90B155GLU-1-0.822-0.91631.2480.0420.0420.0000.0000.0000.000
91B156LYS10.9220.97134.321-0.013-0.0130.0000.0000.0000.000
92B157ALA0-0.006-0.00437.7780.0000.0000.0000.0000.0000.000
93B158SER00.0170.01434.0170.0010.0010.0000.0000.0000.000
94B159LYS10.8280.90036.973-0.034-0.0340.0000.0000.0000.000
95B160ALA00.0230.01238.3260.0010.0010.0000.0000.0000.000
96B161ILE0-0.004-0.00639.4440.0000.0000.0000.0000.0000.000
97B162SER0-0.043-0.03438.0830.0010.0010.0000.0000.0000.000
98B163ASP-1-0.832-0.89740.5200.0340.0340.0000.0000.0000.000
99B164ILE0-0.019-0.00643.2800.0000.0000.0000.0000.0000.000
100B165SER0-0.023-0.00742.455-0.001-0.0010.0000.0000.0000.000
101B166LEU00.0240.01741.9530.0000.0000.0000.0000.0000.000
102B167GLU-1-0.774-0.83445.5000.0240.0240.0000.0000.0000.000
103B168VAL0-0.007-0.01647.187-0.001-0.0010.0000.0000.0000.000
104B169ASP-1-0.820-0.87944.7490.0320.0320.0000.0000.0000.000
105B170ARG10.7870.86248.178-0.025-0.0250.0000.0000.0000.000
106B171LEU0-0.038-0.02351.055-0.001-0.0010.0000.0000.0000.000
107B172GLY00.0730.02851.312-0.001-0.0010.0000.0000.0000.000
108B173GLY0-0.0040.01051.8160.0000.0000.0000.0000.0000.000
109B174ARG10.9120.95953.077-0.020-0.0200.0000.0000.0000.000
110B175VAL00.0270.01855.276-0.001-0.0010.0000.0000.0000.000
111B176SER00.014-0.00453.4110.0000.0000.0000.0000.0000.000
112B177ALA0-0.044-0.02255.8420.0000.0000.0000.0000.0000.000
113B178PHE00.007-0.01758.3800.0000.0000.0000.0000.0000.000
114B179GLU-1-0.876-0.92256.7730.0190.0190.0000.0000.0000.000
115B180MET0-0.0410.00358.478-0.001-0.0010.0000.0000.0000.000
116B181VAL00.009-0.01260.4880.0000.0000.0000.0000.0000.000
117B182THR0-0.019-0.02063.724-0.001-0.0010.0000.0000.0000.000
118B183LYS10.9160.95759.183-0.022-0.0220.0000.0000.0000.000
119B184LYS10.8460.91360.970-0.024-0.0240.0000.0000.0000.000
120B185GLY00.0190.02266.1220.0000.0000.0000.0000.0000.000
121B186GLY0-0.0140.00567.7670.0000.0000.0000.0000.0000.000
122B187LYS10.9600.96868.848-0.014-0.0140.0000.0000.0000.000
123B188ILE0-0.0050.00363.7850.0000.0000.0000.0000.0000.000
124B189ALA00.0180.01367.850-0.001-0.0010.0000.0000.0000.000
125B190GLU-1-0.766-0.88267.5960.0110.0110.0000.0000.0000.000
126B191LYS10.9140.95266.925-0.014-0.0140.0000.0000.0000.000
127B192ASP-1-0.848-0.90864.0970.0160.0160.0000.0000.0000.000
128B193LEU0-0.008-0.00162.6810.0010.0010.0000.0000.0000.000
129B194VAL00.0490.02362.0890.0000.0000.0000.0000.0000.000
130B195THR0-0.004-0.01761.1970.0000.0000.0000.0000.0000.000
131B196VAL0-0.055-0.03256.8910.0000.0000.0000.0000.0000.000
132B197ILE00.0390.03157.6980.0000.0000.0000.0000.0000.000
133B198GLU-1-0.897-0.95558.2130.0110.0110.0000.0000.0000.000
134B199LEU0-0.046-0.01656.0400.0000.0000.0000.0000.0000.000
135B200LEU00.009-0.00152.7140.0000.0000.0000.0000.0000.000
136B201MET00.0190.00753.6650.0000.0000.0000.0000.0000.000
137B202ASN0-0.050-0.03154.999-0.001-0.0010.0000.0000.0000.000
138B203GLU-1-0.785-0.88349.9890.0190.0190.0000.0000.0000.000
139B204LEU0-0.011-0.00249.9100.0000.0000.0000.0000.0000.000
140B205ILE00.0170.00950.652-0.001-0.0010.0000.0000.0000.000
141B206LYS10.7760.87248.666-0.019-0.0190.0000.0000.0000.000
142B207LEU0-0.015-0.01844.8270.0000.0000.0000.0000.0000.000
143B208ASP-1-0.839-0.92946.2990.0070.0070.0000.0000.0000.000
144B209ALA0-0.035-0.00648.235-0.002-0.0020.0000.0000.0000.000
145B210ILE0-0.061-0.01941.881-0.001-0.0010.0000.0000.0000.000
146B211VAL0-0.027-0.01041.583-0.001-0.0010.0000.0000.0000.000
147B212ALA00.0220.01139.0910.0010.0010.0000.0000.0000.000
148B213GLU-1-0.857-0.91535.218-0.003-0.0030.0000.0000.0000.000
149B214GLY00.0220.00134.1680.0030.0030.0000.0000.0000.000
150B215ASP-1-0.856-0.93531.6410.0150.0150.0000.0000.0000.000
151B216VAL00.0330.02634.2030.0020.0020.0000.0000.0000.000
152B217LYS10.9380.97536.6290.0020.0020.0000.0000.0000.000
153B218LEU0-0.035-0.02735.537-0.001-0.0010.0000.0000.0000.000
154B219GLN00.0380.01536.187-0.002-0.0020.0000.0000.0000.000
155B220ARG10.8300.91639.107-0.006-0.0060.0000.0000.0000.000
156B221LYS10.9400.96841.624-0.006-0.0060.0000.0000.0000.000
157B222MET0-0.0100.00138.2570.0000.0000.0000.0000.0000.000
158B223GLN00.0680.04541.4990.0000.0000.0000.0000.0000.000
159B224VAL00.0260.01845.2030.0000.0000.0000.0000.0000.000
160B225LYS10.8410.92546.450-0.012-0.0120.0000.0000.0000.000
161B226ARG10.7860.85944.887-0.028-0.0280.0000.0000.0000.000
162B227VAL00.0100.00648.5730.0000.0000.0000.0000.0000.000
163B228GLN00.0230.00951.1750.0000.0000.0000.0000.0000.000
164B229ASN00.0630.03251.026-0.001-0.0010.0000.0000.0000.000
165B230TYR00.0060.01249.2290.0000.0000.0000.0000.0000.000
166B231VAL00.0240.01054.4370.0000.0000.0000.0000.0000.000
167B232GLU-1-0.919-0.95555.3960.0120.0120.0000.0000.0000.000
168B233THR0-0.032-0.02855.8790.0000.0000.0000.0000.0000.000
169B234LEU0-0.051-0.02857.8010.0000.0000.0000.0000.0000.000
170B235ASP-1-0.867-0.93760.6690.0100.0100.0000.0000.0000.000
171B236ALA0-0.033-0.00761.5450.0000.0000.0000.0000.0000.000
172B237LEU0-0.041-0.03060.9850.0000.0000.0000.0000.0000.000
173B238LYS10.8730.91964.411-0.010-0.0100.0000.0000.0000.000
174B239VAL0-0.0150.00566.5000.0000.0000.0000.0000.0000.000
175B240LYS10.8990.96266.147-0.014-0.0140.0000.0000.0000.000
176B241ASN0-0.060-0.02667.4780.0000.0000.0000.0000.0000.000
177B242SER0-0.046-0.02570.4730.0000.0000.0000.0000.0000.000