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FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: LJQ19

Calculation Name: 1HWG-A-Xray372

Preferred Name: Growth hormone receptor

Target Type: SINGLE PROTEIN

Ligand Name:

ligand 3-letter code:

PDB ID: 1HWG

Chain ID: A

ChEMBL ID: CHEMBL1976

UniProt ID: P10912

Base Structure: X-ray

Registration Date: 2023-03-13

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 188
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2174463.75828
FMO2-HF: Nuclear repulsion 2097051.322397
FMO2-HF: Total energy -77412.435883
FMO2-MP2: Total energy -77637.449244


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:PHE)


Summations of interaction energy for fragment #1(A:1:PHE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-3.897-0.1181.434-2.131-3.081-0.006
Interaction energy analysis for fragmet #1(A:1:PHE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.039 / q_NPA : 0.024
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3THR00.0220.0032.479-5.231-1.5561.435-2.121-2.989-0.006
4A4ILE00.0250.0094.7320.4000.504-0.001-0.010-0.0920.000
5A5PRO0-0.021-0.0027.9890.0780.0780.0000.0000.0000.000
6A6LEU00.0580.01211.0340.0410.0410.0000.0000.0000.000
7A7SER00.0580.03213.0670.0230.0230.0000.0000.0000.000
8A8ARG11.0100.9969.9730.8740.8740.0000.0000.0000.000
9A9LEU0-0.0100.01810.1830.0260.0260.0000.0000.0000.000
10A10PHE00.0720.02113.5300.0490.0490.0000.0000.0000.000
11A11ASP-1-0.886-0.93517.058-0.341-0.3410.0000.0000.0000.000
12A12ASN0-0.073-0.05115.3190.0700.0700.0000.0000.0000.000
13A13ALA00.0320.02216.9980.0390.0390.0000.0000.0000.000
14A14MET0-0.022-0.00618.6910.0320.0320.0000.0000.0000.000
15A15LEU00.001-0.00420.8390.0270.0270.0000.0000.0000.000
16A16ARG10.7920.87018.9350.2450.2450.0000.0000.0000.000
17A17ALA00.0190.00322.5910.0210.0210.0000.0000.0000.000
18A18HIS0-0.051-0.02724.5190.0220.0220.0000.0000.0000.000
19A19ARG10.8120.90625.7280.1280.1280.0000.0000.0000.000
20A20LEU00.006-0.00424.4250.0140.0140.0000.0000.0000.000
21A21HIS0-0.025-0.02528.1100.0200.0200.0000.0000.0000.000
22A22GLN00.0190.00030.4530.0040.0040.0000.0000.0000.000
23A23LEU0-0.030-0.01129.5410.0090.0090.0000.0000.0000.000
24A24ALA00.0030.02132.3050.0090.0090.0000.0000.0000.000
25A25PHE0-0.022-0.01834.0910.0060.0060.0000.0000.0000.000
26A26ASP-1-0.833-0.90636.064-0.085-0.0850.0000.0000.0000.000
27A27THR0-0.034-0.04436.0710.0060.0060.0000.0000.0000.000
28A28TYR0-0.074-0.07438.1930.0040.0040.0000.0000.0000.000
29A29GLN0-0.060-0.04240.0200.0000.0000.0000.0000.0000.000
30A30GLU-1-0.752-0.83841.018-0.056-0.0560.0000.0000.0000.000
31A31PHE0-0.009-0.00942.6500.0040.0040.0000.0000.0000.000
32A32GLU-1-0.729-0.80244.233-0.061-0.0610.0000.0000.0000.000
33A33GLU-1-0.903-0.95346.179-0.057-0.0570.0000.0000.0000.000
34A34ALA0-0.0340.00447.6270.0030.0030.0000.0000.0000.000
35A35TYR0-0.053-0.02745.8220.0040.0040.0000.0000.0000.000
36A36ILE0-0.073-0.02946.9280.0010.0010.0000.0000.0000.000
37A37PRO00.0520.04750.017-0.002-0.0020.0000.0000.0000.000
38A38LYS10.9270.94750.7300.0520.0520.0000.0000.0000.000
39A39GLU-1-0.850-0.93053.065-0.042-0.0420.0000.0000.0000.000
40A40GLN00.0340.02251.5140.0000.0000.0000.0000.0000.000
41A41LYS10.8280.90845.0170.0620.0620.0000.0000.0000.000
42A42TYR0-0.006-0.01949.307-0.003-0.0030.0000.0000.0000.000
43A43SER00.017-0.00351.3290.0000.0000.0000.0000.0000.000
44A44PHE00.0260.02343.1860.0000.0000.0000.0000.0000.000
45A45LEU0-0.006-0.00744.941-0.002-0.0020.0000.0000.0000.000
46A46GLN0-0.056-0.01547.869-0.001-0.0010.0000.0000.0000.000
47A47ASN0-0.037-0.01350.0980.0030.0030.0000.0000.0000.000
48A48PRO00.005-0.00649.164-0.002-0.0020.0000.0000.0000.000
49A49GLN00.0050.01443.3280.0020.0020.0000.0000.0000.000
50A50THR0-0.022-0.03044.647-0.002-0.0020.0000.0000.0000.000
51A51SER0-0.0260.00443.920-0.002-0.0020.0000.0000.0000.000
52A52LEU0-0.020-0.00540.647-0.004-0.0040.0000.0000.0000.000
53A53CYS0-0.055-0.01236.457-0.002-0.0020.0000.0000.0000.000
54A54PHE00.0690.03333.079-0.001-0.0010.0000.0000.0000.000
55A55SER0-0.012-0.03932.5620.0010.0010.0000.0000.0000.000
56A56GLU-1-0.799-0.89733.480-0.095-0.0950.0000.0000.0000.000
57A57SER0-0.014-0.00534.9940.0040.0040.0000.0000.0000.000
58A58ILE0-0.067-0.01729.313-0.002-0.0020.0000.0000.0000.000
59A59PRO0-0.026-0.00731.5050.0010.0010.0000.0000.0000.000
60A60THR0-0.008-0.01830.819-0.009-0.0090.0000.0000.0000.000
61A61PRO0-0.058-0.02530.7710.0070.0070.0000.0000.0000.000
62A62SER00.011-0.00333.7940.0000.0000.0000.0000.0000.000
63A63ASN00.0110.00636.126-0.001-0.0010.0000.0000.0000.000
64A64ARG10.9570.97433.5760.1290.1290.0000.0000.0000.000
65A65GLU-1-0.920-0.95234.038-0.112-0.1120.0000.0000.0000.000
66A66GLU-1-0.785-0.88834.517-0.112-0.1120.0000.0000.0000.000
67A67THR0-0.007-0.01429.534-0.006-0.0060.0000.0000.0000.000
68A68GLN0-0.017-0.00929.831-0.006-0.0060.0000.0000.0000.000
69A69GLN00.0030.01430.472-0.013-0.0130.0000.0000.0000.000
70A70LYS10.8380.92527.6860.1480.1480.0000.0000.0000.000
71A71SER00.021-0.00824.127-0.014-0.0140.0000.0000.0000.000
72A72ASN00.046-0.00620.4360.0280.0280.0000.0000.0000.000
73A73LEU00.0200.01318.1570.0010.0010.0000.0000.0000.000
74A74GLU-1-0.806-0.87021.140-0.169-0.1690.0000.0000.0000.000
75A75LEU00.0020.01423.9330.0070.0070.0000.0000.0000.000
76A76LEU00.0020.01717.3040.0050.0050.0000.0000.0000.000
77A77ARG10.9150.95321.2750.1820.1820.0000.0000.0000.000
78A78ILE00.003-0.01022.7670.0120.0120.0000.0000.0000.000
79A79SER00.003-0.00822.5810.0130.0130.0000.0000.0000.000
80A80LEU0-0.027-0.00219.2410.0080.0080.0000.0000.0000.000
81A81LEU0-0.037-0.01722.5290.0140.0140.0000.0000.0000.000
82A82LEU00.0090.02125.8530.0140.0140.0000.0000.0000.000
83A83ILE00.0280.01122.2910.0110.0110.0000.0000.0000.000
84A84GLN0-0.054-0.05021.5580.0140.0140.0000.0000.0000.000
85A85SER0-0.052-0.04225.6530.0140.0140.0000.0000.0000.000
86A86TRP0-0.021-0.04128.2920.0130.0130.0000.0000.0000.000
87A87LEU0-0.036-0.00423.7700.0050.0050.0000.0000.0000.000
88A88GLU-1-0.848-0.90027.993-0.063-0.0630.0000.0000.0000.000
89A89PRO00.0070.00031.4070.0060.0060.0000.0000.0000.000
90A90VAL00.0420.02129.9530.0040.0040.0000.0000.0000.000
91A91GLN0-0.060-0.03732.7980.0080.0080.0000.0000.0000.000
92A92PHE0-0.034-0.02235.0420.0050.0050.0000.0000.0000.000
93A93LEU00.0320.02234.8360.0030.0030.0000.0000.0000.000
94A94ARG10.8630.92434.9280.0420.0420.0000.0000.0000.000
95A95SER0-0.010-0.01337.7660.0020.0020.0000.0000.0000.000
96A96VAL00.0000.01639.6750.0020.0020.0000.0000.0000.000
97A97PHE0-0.012-0.02533.5010.0000.0000.0000.0000.0000.000
98A98ALA0-0.021-0.01138.2520.0000.0000.0000.0000.0000.000
99A99ASN0-0.103-0.05340.1870.0050.0050.0000.0000.0000.000
100A100SER0-0.043-0.03538.930-0.001-0.0010.0000.0000.0000.000
101A101LEU0-0.035-0.02840.6570.0020.0020.0000.0000.0000.000
102A102VAL0-0.018-0.00335.059-0.002-0.0020.0000.0000.0000.000
103A103TYR00.0220.00130.358-0.003-0.0030.0000.0000.0000.000
104A104GLY00.0180.00231.542-0.008-0.0080.0000.0000.0000.000
105A105ALA00.0300.02431.784-0.005-0.0050.0000.0000.0000.000
106A106SER0-0.020-0.01631.9980.0050.0050.0000.0000.0000.000
107A107ASP-1-0.761-0.86231.785-0.057-0.0570.0000.0000.0000.000
108A108SER00.0060.01429.578-0.006-0.0060.0000.0000.0000.000
109A109ASN00.0140.00627.550-0.010-0.0100.0000.0000.0000.000
110A110VAL00.0160.01026.864-0.013-0.0130.0000.0000.0000.000
111A111TYR0-0.011-0.00325.083-0.015-0.0150.0000.0000.0000.000
112A112ASP-1-0.891-0.95323.665-0.090-0.0900.0000.0000.0000.000
113A113LEU0-0.039-0.03022.204-0.021-0.0210.0000.0000.0000.000
114A114LEU0-0.023-0.00222.305-0.022-0.0220.0000.0000.0000.000
115A115LYS10.8550.90719.8520.1240.1240.0000.0000.0000.000
116A116ASP-1-0.814-0.86417.948-0.274-0.2740.0000.0000.0000.000
117A117LEU00.0100.00417.293-0.043-0.0430.0000.0000.0000.000
118A118GLU-1-0.792-0.87718.446-0.191-0.1910.0000.0000.0000.000
119A119GLU-1-0.909-0.94412.895-0.296-0.2960.0000.0000.0000.000
120A120GLY00.0240.02413.910-0.073-0.0730.0000.0000.0000.000
121A121ILE0-0.017-0.01914.495-0.055-0.0550.0000.0000.0000.000
122A122GLN0-0.048-0.03414.855-0.023-0.0230.0000.0000.0000.000
123A123THR0-0.043-0.0309.164-0.064-0.0640.0000.0000.0000.000
124A124LEU0-0.038-0.02311.595-0.075-0.0750.0000.0000.0000.000
125A125MET0-0.041-0.01713.9040.0070.0070.0000.0000.0000.000
126A126GLY0-0.0060.01111.5330.0430.0430.0000.0000.0000.000
127A127ARG10.8060.8957.9271.0231.0230.0000.0000.0000.000
128A128LEU00.0090.01311.799-0.008-0.0080.0000.0000.0000.000
129A129GLU-1-0.848-0.89715.065-0.266-0.2660.0000.0000.0000.000
130A130ASP-1-0.830-0.92116.815-0.365-0.3650.0000.0000.0000.000
131A131GLY0-0.025-0.01719.7450.0260.0260.0000.0000.0000.000
132A132SER0-0.055-0.03921.7870.0270.0270.0000.0000.0000.000
133A133PRO00.0310.03122.551-0.009-0.0090.0000.0000.0000.000
134A134ARG10.8600.91616.1770.3350.3350.0000.0000.0000.000
135A135THR0-0.120-0.07923.6780.0110.0110.0000.0000.0000.000
136A136GLY00.0790.03127.4020.0030.0030.0000.0000.0000.000
137A137GLN0-0.007-0.01129.132-0.003-0.0030.0000.0000.0000.000
138A138ILE00.0460.02926.3380.0000.0000.0000.0000.0000.000
139A139PHE00.0240.00821.922-0.007-0.0070.0000.0000.0000.000
140A140LYS10.8550.93625.8080.1140.1140.0000.0000.0000.000
141A141GLN00.0450.02828.1100.0090.0090.0000.0000.0000.000
142A142THR0-0.046-0.02927.118-0.009-0.0090.0000.0000.0000.000
143A143TYR00.034-0.01126.5720.0000.0000.0000.0000.0000.000
144A144SER0-0.014-0.01128.9810.0060.0060.0000.0000.0000.000
145A145LYS10.8620.94529.8870.0850.0850.0000.0000.0000.000
146A146PHE00.0410.01834.5440.0000.0000.0000.0000.0000.000
147A147ASP-1-0.802-0.89237.324-0.050-0.0500.0000.0000.0000.000
148A148THR0-0.054-0.01637.9600.0010.0010.0000.0000.0000.000
149A149ASN0-0.071-0.04140.9460.0040.0040.0000.0000.0000.000
150A150SER0-0.011-0.01244.6410.0000.0000.0000.0000.0000.000
151A151HIS0-0.018-0.01545.0550.0040.0040.0000.0000.0000.000
152A152ASN0-0.078-0.03548.9840.0020.0020.0000.0000.0000.000
153A153ASP-1-0.835-0.91546.342-0.043-0.0430.0000.0000.0000.000
154A154ASP-1-0.805-0.89849.708-0.038-0.0380.0000.0000.0000.000
155A155ALA00.002-0.00747.038-0.002-0.0020.0000.0000.0000.000
156A156LEU0-0.0160.00346.238-0.003-0.0030.0000.0000.0000.000
157A157LEU00.030-0.00346.517-0.003-0.0030.0000.0000.0000.000
158A158LYS10.8550.93142.3790.0440.0440.0000.0000.0000.000
159A159ASN0-0.029-0.02142.041-0.004-0.0040.0000.0000.0000.000
160A160TYR0-0.029-0.03241.555-0.004-0.0040.0000.0000.0000.000
161A161GLY00.0430.01042.007-0.004-0.0040.0000.0000.0000.000
162A162LEU0-0.033-0.01436.746-0.005-0.0050.0000.0000.0000.000
163A163LEU00.0040.01137.246-0.006-0.0060.0000.0000.0000.000
164A164TYR0-0.056-0.04737.538-0.007-0.0070.0000.0000.0000.000
165A166PHE00.0210.01229.898-0.006-0.0060.0000.0000.0000.000
166A167ARG10.9070.96832.8450.0820.0820.0000.0000.0000.000
167A168LYS10.8320.90633.8550.0790.0790.0000.0000.0000.000
168A169ASP-1-0.747-0.83930.775-0.113-0.1130.0000.0000.0000.000
169A170MET0-0.041-0.01427.927-0.015-0.0150.0000.0000.0000.000
170A171ASP-1-0.887-0.92429.022-0.137-0.1370.0000.0000.0000.000
171A172LYS10.7980.89730.3110.1020.1020.0000.0000.0000.000
172A173VAL0-0.009-0.00124.237-0.012-0.0120.0000.0000.0000.000
173A174GLU-1-0.811-0.89325.598-0.182-0.1820.0000.0000.0000.000
174A175THR0-0.021-0.01126.472-0.012-0.0120.0000.0000.0000.000
175A176PHE0-0.027-0.03626.048-0.008-0.0080.0000.0000.0000.000
176A177LEU00.0110.00320.356-0.018-0.0180.0000.0000.0000.000
177A178ARG10.9100.93622.4940.2180.2180.0000.0000.0000.000
178A179ILE0-0.025-0.01824.709-0.005-0.0050.0000.0000.0000.000
179A180VAL0-0.0180.00319.905-0.004-0.0040.0000.0000.0000.000
180A181GLN00.0150.02619.8970.0080.0080.0000.0000.0000.000
181A182CYS0-0.076-0.05621.329-0.005-0.0050.0000.0000.0000.000
182A183ARG10.8220.92023.0080.2300.2300.0000.0000.0000.000
183A184SER0-0.038-0.02517.940-0.008-0.0080.0000.0000.0000.000
184A185VAL0-0.096-0.04017.209-0.054-0.0540.0000.0000.0000.000
185A186GLU-1-0.841-0.90919.731-0.232-0.2320.0000.0000.0000.000
186A187GLY0-0.0070.00922.295-0.017-0.0170.0000.0000.0000.000
187A188SER0-0.069-0.05321.7300.0200.0200.0000.0000.0000.000
188A190GLY00.0060.02527.1830.0100.0100.0000.0000.0000.000